Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.8G119200 Prunus persica HOM05D006779 ORTHO05D008491 1.2e-122 443.4 254 100.0
MD05G1075500 Malus domestica HOM05D006779 ORTHO05D008491 1.6e-103 379.8 254 87.0
FAN15G3147 Fragaria x ananassa HOM05D006779 ORTHO05D008491 1.4e-97 360.1 256 79.7
FAN20G2937 Fragaria x ananassa HOM05D006779 ORTHO05D008491 3.0e-97 359.0 256 79.3
RcHm_v2.0_Chr6g0258731 Rosa chinensis HOM05D006779 ORTHO05D008491 4.3e-96 355.1 256 78.1
FvH4_2g06680 Fragaria vesca HOM05D006779 ORTHO05D008491 3.7e-95 352.1 256 78.5
FAN24G0787 Fragaria x ananassa HOM05D006779 ORTHO05D008491 4.8e-95 351.7 256 78.5
QL11p037315 Quercus lobata HOM05D006779 ORTHO05D008491 3.5e-85 318.9 252 76.2
Haze_01903 Corylus avellana HOM05D006779 ORTHO05D008491 2.9e-84 315.8 254 73.6
CiPaw.05G054000 Carya illinoinensis HOM05D006779 ORTHO05D008491 4.2e-83 312.0 253 72.7
Sabra09G0080600 Salix brachista HOM05D006779 ORTHO05D008491 1.2e-82 310.5 251 72.5
Sed0011670 Sechium edule HOM05D006779 ORTHO05D008491 1.6e-82 310.1 253 70.8
CsaV3_7G008730 Cucumis sativus L. HOM05D006779 ORTHO05D008491 2.1e-82 309.7 253 71.5
CANSAT25G0176 Cannabis sativa HOM05D006779 ORTHO05D008491 1.0e-81 307.4 251 73.7
Potri.009G105500 Populus trichocarpa HOM05D006779 ORTHO05D008491 1.5e-80 303.5 251 70.5
Manes.15G142500 Manihot esculenta HOM05D006779 ORTHO05D008491 5.7e-80 301.6 251 71.7
GSVIVG01031784001 Vitis vinifera HOM05D006779 ORTHO05D008491 5.3e-78 295.0 254 72.0
PGR142G0644 Punica granatum HOM05D006779 ORTHO05D008491 2.7e-77 292.7 252 69.0
Gorai.005G240600 Gossypium raimondii HOM05D006779 ORTHO05D008491 7.7e-77 291.2 251 73.3
Thecc.02G097400 Theobroma cacao HOM05D006779 ORTHO05D008491 1.7e-76 290.0 250 74.4
Gohir.D02G212600 Gossypium hirsutum HOM05D006779 ORTHO05D008491 2.2e-76 289.7 251 72.9
Atru.chr5.2773 Acer truncatum HOM05D006779 ORTHO05D008491 2.9e-76 289.3 258 71.7
Dinv42131 Davidia involucrata HOM05D006779 ORTHO05D008491 1.2e-74 283.9 262 66.0
Gohir.A03G191700 Gossypium hirsutum HOM05D006779 ORTHO05D008491 1.2e-74 283.9 251 72.1
Dinv23582 Davidia involucrata HOM05D006779 ORTHO05D008491 1.6e-74 283.5 263 66.2
Actinidia00459 Actinidia chinensis HOM05D006779 ORTHO05D008491 8.0e-74 281.2 259 62.2
CSS0011815 Camellia sinensis var. sinensis HOM05D000591 ORTHO05D000579 8.0e-74 281.2 256 62.5
Ciclev10029963m.g Citrus clementina HOM05D006779 ORTHO05D008491 1.2e-72 277.3 258 68.6
Eucgr.I01169 Eucalyptus grandis HOM05D006779 ORTHO05D008491 1.2e-72 277.3 252 65.9
TWI79G0004 Tripterygium wilfordii HOM05D006779 ORTHO05D008491 9.8e-72 274.2 255 69.4
Glyma.01G146900 Glycine max HOM05D006779 ORTHO05D008491 1.7e-71 273.5 250 65.6
Glyma.10G112900 Glycine max HOM05D006779 ORTHO05D008491 1.7e-71 273.5 250 65.6
Cc02_g18560 Coffea canephora HOM05D006779 ORTHO05D008491 2.2e-71 273.1 260 63.8
TWI31G0027 Tripterygium wilfordii HOM05D006779 ORTHO05D008491 2.2e-71 273.1 255 69.8
arahy.Tifrunner.gnm1.ann1.8ZG09Z Arachis hypogaea HOM05D006779 ORTHO05D008491 4.8e-71 271.9 255 66.3
ClCG02G005780 Citrullus lanatus HOM05D006779 ORTHO05D008491 8.3e-71 271.2 295 59.3
arahy.Tifrunner.gnm1.ann1.T066AP Arachis hypogaea HOM05D006779 ORTHO05D008491 4.1e-70 268.9 252 66.3
Lalb_Chr09g0328181 Lupinus albus HOM05D006779 ORTHO05D008491 7.0e-70 268.1 250 66.8
COL.COLO4_32686 Corchorus olitorius HOM05D006779 ORTHO05D008491 9.1e-70 267.7 250 71.2
Oeu064516.1 Olea europaea HOM05D006779 ORTHO05D008491 9.1e-70 267.7 262 61.5
Phvul.007G247000 Phaseolus vulgaris HOM05D006779 ORTHO05D008491 1.6e-69 266.9 250 61.6
Glyma.02G159500 Glycine max HOM05D006779 ORTHO05D008491 3.8e-68 262.3 250 64.4
Nn5g30192 Nelumbo nucifera HOM05D006779 ORTHO05D008491 5.0e-68 261.9 262 64.9
Ca_18655_v3 Cicer arietinum L. HOM05D006779 ORTHO05D008491 8.5e-68 261.2 250 68.0
Sc18g0004890 Simmondsia chinensis HOM05D006779 ORTHO05D008491 8.5e-68 261.2 251 68.9
MSTRG.16763 Avicennia marina HOM05D006779 ORTHO05D008491 9.4e-67 257.7 251 64.1
CAN.G322.16 Capsicum annuum HOM05D006779 ORTHO05D008491 4.7e-66 255.4 251 65.3
PGSC0003DMG400025811 Solanum tuberosum HOM05D006779 ORTHO05D008491 6.1e-66 255.0 262 59.9
Sopen01g050660 Solanum pennellii HOM05D006779 ORTHO05D008491 1.8e-65 253.4 262 59.2
Solyc01g108430.3 Solanum lycopersicum HOM05D006779 ORTHO05D008491 3.0e-65 252.7 262 59.5
arahy.Tifrunner.gnm1.ann1.QJKD6Y Arachis hypogaea HOM05D006779 ORTHO05D008491 4.0e-65 252.3 252 64.7
Nitab4.5_0004334g0110 Nicotiana tabacum HOM05D006779 ORTHO05D008491 4.0e-65 252.3 262 60.3
MBI02_g21199_MAGBIO Magnolia biondii HOM05D006779 ORTHO05D008491 5.2e-65 251.9 273 60.8
Migut.B00314 Erythranthe guttata HOM05D006779 ORTHO05D008491 8.8e-65 251.1 264 61.4
Aa31LG10G4420 Aethionema arabicum HOM05D006779 ORTHO05D008491 1.2e-64 250.8 250 62.0
Aqoxy6G01411 Aquilegia oxysepala HOM05D006779 ORTHO05D008491 2.6e-64 249.6 262 61.5
vmacro02181 Vaccinium macrocarpon HOM05D006779 ORTHO05D008491 3.4e-64 249.2 293 51.2
Rhsim11G0168500 Rhododendron simsii HOM05D006779 ORTHO05D008491 4.4e-64 248.8 289 51.6
Nitab4.5_0005583g0020 Nicotiana tabacum HOM05D006779 ORTHO05D008491 9.8e-64 247.7 262 60.7
SalBow6G0615 Salvia bowleyana HOM05D006779 ORTHO05D008491 9.8e-64 247.7 265 60.4
EL10Ac3g06870 Beta vulgaris HOM05D006779 ORTHO05D008491 2.8e-63 246.1 251 64.5
Lj5C207T4 Lonicera japonica HOM05D006779 ORTHO05D008491 1.1e-62 244.2 263 61.2
Psat7g121840 Pisum sativum HOM05D006779 ORTHO05D008491 1.1e-62 244.2 253 61.3
SGA_v2.0_scaffold90G27693 Striga asiatica HOM05D006779 ORTHO05D008491 1.6e-61 240.4 262 55.3
unitig_60.g25783 Utricularia gibba HOM05D006779 ORTHO05D008491 1.6e-61 240.4 256 62.1
AT1G49590 Arabidopsis thaliana HOM05D006779 ORTHO05D008491 2.0e-61 240.0 252 61.1
Lj4g0006122 Lotus japonicus HOM05D006779 ORTHO05D008491 2.0e-61 240.0 250 64.0
AUR62034187 Chenopodium quinoa HOM05D006779 ORTHO05D008491 2.7e-61 239.6 254 63.8
Sp1g36470 Schrenkiella parvula HOM05D006779 ORTHO05D008491 7.7e-61 238.0 252 58.7
Thhalv10011741m.g Eutrema salsugineum HOM05D006779 ORTHO05D008491 1.0e-60 237.7 252 59.5
SGA_v2.0_scaffold90G27688 Striga asiatica HOM05D006779 ORTHO05D008491 1.3e-60 237.3 262 55.0
HPP92_004257 Vanilla planifolia HOM05D006779 ORTHO05D008491 2.3e-60 236.5 262 61.1
Peaxi162Scf00016g01637 Petunia axillaris HOM05D006779 ORTHO05D008491 2.9e-60 236.1 249 61.0
DCAR_029018 Daucus carota HOM05D000144 ORTHO05D003364 5.6e-59 231.9 263 59.7
Hund00325 Selenicereus undatus HOM05D006779 ORTHO05D008491 3.6e-58 229.2 250 60.4
AUR62022456 Chenopodium quinoa HOM05D006779 ORTHO05D008491 2.3e-57 226.5 294 56.1
Carub.0001s3879 Capsella rubella HOM05D006779 ORTHO05D008491 6.8e-57 224.9 252 61.1
Ah.04g152710 Amaranthus hybridus HOM05D006779 ORTHO05D008491 1.2e-56 224.2 248 57.3
Medtr4g086640 Medicago truncatula HOM05D006779 ORTHO05D008491 2.9e-55 219.5 251 60.6
A06p03540 Brassica napus HOM05D006779 ORTHO05D008491 2.4e-54 216.5 253 55.3
MELO3C018438.2 Cucumis melo HOM05D006779 ORTHO05D008491 9.2e-54 214.5 207 67.1
ECA234G4762 Erigeron canadensis HOM05D006779 ORTHO05D008491 2.0e-53 213.4 253 53.8
BraA06t23562Z Brassica rapa HOM05D006779 ORTHO05D008491 2.7e-53 213.0 251 55.0
BolC6t35591H Brassica oleracea HOM05D006779 ORTHO05D008491 5.9e-53 211.8 250 54.4
AL1G56960 Arabidopsis lyrata HOM05D006779 ORTHO05D008491 3.9e-52 209.1 268 55.6
PSO541G4058 Papaver somniferum HOM05D006779 ORTHO05D008491 3.9e-52 209.1 264 57.6
SHI05379 Sapria himalayana HOM05D006779 ORTHO05D008491 2.3e-49 199.9 254 56.3
HanXRQChr10g0303251 Helianthus annuus HOM05D006779 ORTHO05D008491 5.2e-49 198.7 251 53.4
PSO675G5018 Papaver somniferum HOM05D006779 ORTHO05D008491 5.2e-49 198.7 264 56.1
FAN20G1913 Fragaria x ananassa HOM05D006779 ORTHO05D008491 2.0e-48 196.8 159 74.2
Lsat_1_v5_gn_5_113321 Lactuca sativa HOM05D006779 ORTHO05D008491 6.4e-47 191.8 258 46.9
CDE06G1966 Ceratophyllum demersum HOM05D006779 ORTHO05D008491 1.1e-46 191.0 251 49.4
BcaNung06359 Brassica carinata HOM05D006779 ORTHO05D008491 7.0e-46 188.3 253 50.6
ATR0097G032 Amborella trichopoda HOM05D006779 ORTHO05D008491 3.4e-40 169.5 243 46.9
Zm00001eb373090 Zea mays HOM05D006779 ORTHO05D008491 1.7e-39 167.2 253 51.8
Mapoly0157s0003 Marchantia polymorpha HOM05D006779 ORTHO05D008491 5.4e-38 162.2 300 46.0
TAR628G0388 Trochodendron aralioides HOM05D006779 ORTHO05D008491 3.6e-34 149.4 111 70.3
C06p04620 Brassica napus HOM05D006779 ORTHO05D008491 1.8e-33 147.1 207 52.2
Cpa.g.sc62.36 Carica papaya HOM05D006779 ORTHO05D008491 8.9e-33 144.8 101 74.3
AagrBONN_evm.TU.Sc2ySwM_344.4302 Anthoceros agrestis HOM05D006779 ORTHO05D008491 1.2e-32 144.4 289 42.9
HPP92_004235 Vanilla planifolia HOM05D006779 ORTHO05D008491 2.9e-31 139.8 216 54.2
Pp3c14_26080 Physcomitrium patens HOM05D006779 ORTHO05D008491 2.1e-29 133.7 292 41.8
CSS0024784 Camellia sinensis var. sinensis HOM05D006779 ORTHO05D008491 1.1e-27 127.9 189 47.6
CSS0021002 Camellia sinensis var. sinensis HOM05D006779 ORTHO05D008491 2.1e-26 123.6 189 46.0
CBR_g17671 Chara braunii HOM05D006779 ORTHO05D008491 2.6e-24 116.7 338 37.3
SMO367G0139 Selaginella moellendorffii HOM05D006779 ORTHO05D008491 4.4e-24 115.9 283 36.4
CARHR039640 Cardamine hirsuta HOM05D006779 ORTHO05D008491 9.9e-24 114.8 151 57.6
TPR.G23531 Trifolium pratense HOM05D006779 ORTHO05D008491 9.9e-24 114.8 153 55.6
TPR.G23511 Trifolium pratense HOM05D006779 ORTHO05D008491 2.2e-23 113.6 70 80.0
Os06g0215200 Oryza sativa ssp. japonica HOM05D006779 ORTHO05D008491 4.9e-23 112.5 70 77.1
AUR62042088 Chenopodium quinoa HOM05D006779 ORTHO05D008491 2.3e-20 103.6 206 50.0
CDE03G0027 Ceratophyllum demersum HOM05D006779 ORTHO05D008491 1.3e-18 97.8 251 35.1
TAR628G1516 Trochodendron aralioides HOM05D006779 ORTHO05D008491 2.0e-16 90.5 120 50.8
MD10G1090400 Malus domestica HOM05D006779 ORTHO05D008491 6.4e-15 85.5 114 57.0
CSS0005405 Camellia sinensis var. sinensis HOM05D006779 ORTHO05D008491 2.4e-14 83.6 82 63.4
CSS0011003 Camellia sinensis var. sinensis HOM05D006779 ORTHO05D008491 2.4e-14 83.6 82 63.4
CSS0022737 Camellia sinensis var. sinensis HOM05D006779 ORTHO05D008491 1.2e-13 81.3 186 36.6
CSS0034996 Camellia sinensis var. sinensis HOM05D006779 ORTHO05D008491 5.1e-12 75.9 189 37.6
EL10Ac9g20940 Beta vulgaris HOM05D002686 ORTHO05D003222 2.0e-08 63.9 59 66.1
Ah.08g219340 Amaranthus hybridus HOM05D006779 ORTHO05D008491 1.4e-06 57.8 95 44.2


User provided reference genes

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