Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.6G314900 Prunus persica HOM05D005935 ORTHO05D007012 1.4e-89 333.2 204 100.0
MD04G1195100 Malus domestica HOM05D005935 ORTHO05D007012 1.5e-83 313.2 201 95.0
MD12G1207200 Malus domestica HOM05D005935 ORTHO05D007012 1.9e-81 306.2 200 94.0
Eucgr.H03282 Eucalyptus grandis HOM05D005935 ORTHO05D007012 1.7e-79 299.7 204 87.7
GSVIVG01031220001 Vitis vinifera HOM05D005935 ORTHO05D007012 9.6e-78 293.9 205 88.3
Dinv24425 Davidia involucrata HOM05D005935 ORTHO05D007012 1.6e-77 293.1 205 87.8
PGR031G1309 Punica granatum HOM05D005935 ORTHO05D007012 3.6e-77 292.0 204 87.7
Sed0001365 Sechium edule HOM05D005935 ORTHO05D007012 4.7e-77 291.6 204 87.3
RcHm_v2.0_Chr3g0456881 Rosa chinensis HOM05D005935 ORTHO05D007012 6.2e-77 291.2 200 88.5
TAR362G1094 Trochodendron aralioides HOM05D005935 ORTHO05D007012 1.1e-76 290.4 205 85.9
Ah.06g188880 Amaranthus hybridus HOM05D005935 ORTHO05D007012 1.2e-75 287.0 204 84.3
ClCG02G015080 Citrullus lanatus HOM05D005935 ORTHO05D007012 1.5e-75 286.6 204 86.8
MELO3C004198.2 Cucumis melo HOM05D005935 ORTHO05D007012 1.5e-75 286.6 204 86.8
Lsat_1_v5_gn_5_102820 Lactuca sativa HOM05D005935 ORTHO05D007012 1.5e-75 286.6 199 86.9
TAR636G0846 Trochodendron aralioides HOM05D005935 ORTHO05D007012 2.0e-75 286.2 204 88.7
CiPaw.07G028100 Carya illinoinensis HOM05D005935 ORTHO05D007012 4.4e-75 285.0 204 84.8
CsaV3_2G006940 Cucumis sativus L. HOM05D005935 ORTHO05D007012 4.4e-75 285.0 204 86.3
EL10Ac4g09829 Beta vulgaris HOM05D005935 ORTHO05D007012 7.6e-75 284.3 205 85.9
FvH4_6g07240 Fragaria vesca HOM05D005935 ORTHO05D007012 7.6e-75 284.3 197 88.3
SGA_v2.0_scaffold81G26126 Striga asiatica HOM05D005935 ORTHO05D007012 7.6e-75 284.3 204 86.3
Phvul.001G225500 Phaseolus vulgaris HOM05D005935 ORTHO05D007012 9.9e-75 283.9 204 86.3
Aqoxy2G00839 Aquilegia oxysepala HOM05D005935 ORTHO05D007012 2.2e-74 282.7 205 86.3
Glyma.19G228900 Glycine max HOM05D005935 ORTHO05D007012 2.2e-74 282.7 203 86.2
Haze_04079 Corylus avellana HOM05D005935 ORTHO05D007012 2.9e-74 282.3 196 86.7
SGA_v2.0_scaffold80G25879 Striga asiatica HOM05D005935 ORTHO05D007012 4.9e-74 281.6 204 85.3
arahy.Tifrunner.gnm1.ann1.G5WI6L Arachis hypogaea HOM05D005935 ORTHO05D007012 6.4e-74 281.2 204 85.8
arahy.Tifrunner.gnm1.ann1.H1X696 Arachis hypogaea HOM05D005935 ORTHO05D007012 6.4e-74 281.2 204 85.8
arahy.Tifrunner.gnm1.ann1.I9BDFC Arachis hypogaea HOM05D005935 ORTHO05D007012 1.1e-73 280.4 204 84.8
MSTRG.27950 Avicennia marina HOM05D005935 ORTHO05D007012 1.4e-73 280.0 204 85.8
Hma1.2p1_0008F-1.1_g005750 Hydrangea macrophylla HOM05D005935 ORTHO05D007012 1.4e-73 280.0 204 85.8
Manes.09G175700 Manihot esculenta HOM05D005935 ORTHO05D007012 1.9e-73 279.6 205 86.3
arahy.Tifrunner.gnm1.ann1.7UDZ1N Arachis hypogaea HOM05D005935 ORTHO05D007012 3.2e-73 278.9 204 82.8
SalBow3G1520 Salvia bowleyana HOM05D005935 ORTHO05D007012 4.2e-73 278.5 204 83.3
COL.COLO4_04140 Corchorus olitorius HOM05D005935 ORTHO05D007012 5.4e-73 278.1 201 85.1
Gohir.D08G223300 Gossypium hirsutum HOM05D005935 ORTHO05D007012 9.3e-73 277.3 200 86.5
Gorai.004G237200 Gossypium raimondii HOM05D005935 ORTHO05D007012 9.3e-73 277.3 200 86.5
Ca_09298_v3 Cicer arietinum L. HOM05D005935 ORTHO05D007012 1.6e-72 276.6 203 84.2
HanXRQChr10g0299201 Helianthus annuus HOM05D005935 ORTHO05D007012 2.1e-72 276.2 199 86.9
Cc02_g34830 Coffea canephora HOM05D005935 ORTHO05D007012 2.7e-72 275.8 204 82.8
FAN05G5324 Fragaria x ananassa HOM05D005935 ORTHO05D007012 2.7e-72 275.8 206 84.0
CANSAT54G1507 Cannabis sativa HOM05D005935 ORTHO05D007012 3.5e-72 275.4 206 86.4
FAN14G3557 Fragaria x ananassa HOM05D005935 ORTHO05D007012 3.5e-72 275.4 206 84.0
Gohir.A08G206600 Gossypium hirsutum HOM05D005935 ORTHO05D007012 3.5e-72 275.4 200 86.0
TWI36G1229 Tripterygium wilfordii HOM05D005935 ORTHO05D007012 4.6e-72 275.0 201 87.6
Glyma.03G231900 Glycine max HOM05D005935 ORTHO05D007012 6.0e-72 274.6 203 84.2
Atru.chr2.148 Acer truncatum HOM05D005935 ORTHO05D007012 7.8e-72 274.2 205 85.4
FAN02G1619 Fragaria x ananassa HOM05D005935 ORTHO05D007012 7.8e-72 274.2 206 83.5
Aqoxy4G02482 Aquilegia oxysepala HOM05D005935 ORTHO05D007012 1.0e-71 273.9 205 84.4
Cpa.g.sc48.144 Carica papaya HOM05D005935 ORTHO05D007012 1.3e-71 273.5 200 86.5
VMungo1383G1193 Vigna mungo HOM05D005935 ORTHO05D007012 1.3e-71 273.5 200 85.0
Os03g0831900 Oryza sativa ssp. japonica HOM05D005935 ORTHO05D007012 3.0e-71 272.3 202 81.2
Lj1g0021681 Lotus japonicus HOM05D005935 ORTHO05D007012 3.9e-71 271.9 202 84.7
CDE11G0767 Ceratophyllum demersum HOM05D005935 ORTHO05D007012 5.1e-71 271.6 205 85.4
Actinidia16851 Actinidia chinensis HOM05D005935 ORTHO05D007012 6.6e-71 271.2 196 90.3
Thecc.05G321000 Theobroma cacao HOM05D005935 ORTHO05D007012 6.6e-71 271.2 201 84.1
TWI56G1463 Tripterygium wilfordii HOM05D005935 ORTHO05D007012 8.7e-71 270.8 201 87.1
Migut.N01391 Erythranthe guttata HOM05D005935 ORTHO05D007012 1.1e-70 270.4 205 82.4
CDE05G0147 Ceratophyllum demersum HOM05D005935 ORTHO05D007012 1.9e-70 269.6 205 84.9
Lalb_Chr18g0046051 Lupinus albus HOM05D005935 ORTHO05D007012 3.3e-70 268.9 205 82.9
CAN.G1715.16 Capsicum annuum HOM05D005935 ORTHO05D007012 5.6e-70 268.1 204 82.4
AUR62000683 Chenopodium quinoa HOM05D005935 ORTHO05D007012 1.6e-69 266.5 204 81.9
Peaxi162Scf00673g00126 Petunia axillaris HOM05D005935 ORTHO05D007012 1.6e-69 266.5 195 85.1
QL03p018299 Quercus lobata HOM05D005935 ORTHO05D007012 1.6e-69 266.5 203 81.8
Sc09g0002670 Simmondsia chinensis HOM05D005935 ORTHO05D007012 2.1e-69 266.2 204 83.3
Carub.0003s0513 Capsella rubella HOM05D005935 ORTHO05D007012 2.8e-69 265.8 200 83.0
Ciclev10002528m.g Citrus clementina HOM05D005935 ORTHO05D007012 2.8e-69 265.8 200 86.5
PSO170G3047 Papaver somniferum HOM05D005935 ORTHO05D007012 3.6e-69 265.4 200 85.5
PSO357G0321 Papaver somniferum HOM05D005935 ORTHO05D007012 3.6e-69 265.4 200 85.5
Solyc01g100330.3 Solanum lycopersicum HOM05D005935 ORTHO05D007012 3.6e-69 265.4 204 79.9
Sopen01g043840 Solanum pennellii HOM05D005935 ORTHO05D007012 3.6e-69 265.4 204 79.9
THA.LOC104802776 Tarenaya hassleriana HOM05D005935 ORTHO05D007012 3.6e-69 265.4 200 83.0
Zm00001eb121760 Zea mays HOM05D005935 ORTHO05D007012 3.6e-69 265.4 201 77.6
Nn3g21642 Nelumbo nucifera HOM05D005935 ORTHO05D007012 4.8e-69 265.0 201 80.6
unitig_21.g20172 Utricularia gibba HOM05D005935 ORTHO05D007012 4.8e-69 265.0 205 81.5
ATR0767G209 Amborella trichopoda HOM05D005935 ORTHO05D007012 6.2e-69 264.6 204 80.9
vmacro01555 Vaccinium macrocarpon HOM05D005935 ORTHO05D007012 6.2e-69 264.6 247 70.0
PGSC0003DMG400002806 Solanum tuberosum HOM05D005935 ORTHO05D007012 8.1e-69 264.2 204 79.4
BraA05t22944Z Brassica rapa HOM05D002110 ORTHO05D007012 1.1e-68 263.8 200 80.5
ECA234G4853 Erigeron canadensis HOM05D005935 ORTHO05D007012 1.4e-68 263.5 200 82.5
Medtr7g112060 Medicago truncatula HOM05D005935 ORTHO05D007012 1.4e-68 263.5 200 83.0
Lalb_Chr04g0260471 Lupinus albus HOM05D005935 ORTHO05D007012 1.8e-68 263.1 205 75.1
Sp3g04650 Schrenkiella parvula HOM05D005935 ORTHO05D007012 1.8e-68 263.1 200 81.5
BolC5t34806H Brassica oleracea HOM05D002110 ORTHO05D007012 3.1e-68 262.3 198 79.3
BcaC05g30089 Brassica carinata HOM05D005935 ORTHO05D007012 4.0e-68 261.9 200 79.0
Psat3g013040 Pisum sativum HOM05D005935 ORTHO05D007012 5.3e-68 261.5 198 81.3
AT3G05760 Arabidopsis thaliana HOM05D005935 ORTHO05D007012 6.9e-68 261.2 200 82.0
Potri.013G010300 Populus trichocarpa HOM05D005935 ORTHO05D007012 9.0e-68 260.8 204 85.3
SEGI_34613 Sequoiadendron giganteum HOM05D005935 ORTHO05D007012 9.0e-68 260.8 205 75.6
CARHR080230 Cardamine hirsuta HOM05D005935 ORTHO05D007012 1.5e-67 260.0 201 83.1
QL01p019294 Quercus lobata HOM05D005935 ORTHO05D007012 1.5e-67 260.0 199 82.9
AL3G16500 Arabidopsis lyrata HOM05D005935 ORTHO05D007012 2.0e-67 259.6 200 81.0
C05p61480 Brassica napus HOM05D002110 ORTHO05D007012 2.6e-67 259.2 201 82.1
PSO478G5244 Papaver somniferum HOM05D005935 ORTHO05D007012 1.3e-66 256.9 204 82.4
BcaC05g29782 Brassica carinata HOM05D005935 ORTHO05D007012 2.4e-65 252.7 200 78.0
FAN09G4449 Fragaria x ananassa HOM05D005935 ORTHO05D007012 2.4e-65 252.7 152 87.5
Pp3c4_20180 Physcomitrium patens HOM05D005935 ORTHO05D007012 2.4e-65 252.7 202 80.2
DCAR_005416 Daucus carota HOM05D005935 ORTHO05D007012 4.2e-65 251.9 169 92.3
Duzib128G1094 Durio zibethinus HOM05D005935 ORTHO05D007012 6.0e-64 248.1 152 84.9
Nitab4.5_0000155g0010 Nicotiana tabacum HOM05D005935 ORTHO05D007012 7.9e-64 247.7 204 77.0
Nitab4.5_0013342g0020 Nicotiana tabacum HOM05D000001 ORTHO05D004269 1.7e-63 246.5 207 76.3
HPP92_015241 Vanilla planifolia HOM05D005935 ORTHO05D007012 4.3e-62 241.9 195 82.6
Aa31LG5G16170 Aethionema arabicum HOM05D005935 ORTHO05D007012 2.4e-60 236.1 214 63.1
Mapoly0111s0002 Marchantia polymorpha HOM05D005935 ORTHO05D007012 3.1e-60 235.7 205 72.7
CSS0047945 Camellia sinensis var. sinensis HOM05D005935 ORTHO05D007012 5.3e-60 235.0 161 90.1
TPR.G1633 Trifolium pratense HOM05D005935 ORTHO05D007012 6.9e-60 234.6 199 73.4
Thhalv10022198m.g Eutrema salsugineum HOM05D005935 ORTHO05D007012 9.9e-59 230.7 276 59.1
AUR62005273 Chenopodium quinoa HOM05D005935 ORTHO05D007012 1.7e-58 229.9 198 78.3
AagrBONN_evm.TU.Sc2ySwM_344.1201 Anthoceros agrestis HOM05D005935 ORTHO05D007012 7.9e-56 221.1 148 74.3
AagrBONN_evm.TU.Sc2ySwM_228.1845 Anthoceros agrestis HOM05D005935 ORTHO05D007012 9.6e-54 214.2 145 73.1
CSS0009551 Camellia sinensis var. sinensis HOM05D005935 ORTHO05D007012 3.7e-53 212.2 196 74.0
Hund07136 Selenicereus undatus HOM05D005935 ORTHO05D007012 3.7e-53 212.2 297 56.2
AagrBONN_evm.TU.Sc2ySwM_368.1862 Anthoceros agrestis HOM05D005935 ORTHO05D007012 6.9e-52 208.0 131 78.6
Hund21747 Selenicereus undatus HOM05D005935 ORTHO05D007012 1.2e-51 207.2 204 69.1
Rhsim11G0094200 Rhododendron simsii HOM05D005935 ORTHO05D007012 7.6e-51 204.5 204 58.8
SMO201G0167 Selaginella moellendorffii HOM05D005935 ORTHO05D007012 1.3e-50 203.8 205 62.4
Nitab4.5_0000368g0260 Nicotiana tabacum HOM05D005935 ORTHO05D007012 2.5e-49 199.5 203 62.1
Lj5A336T44 Lonicera japonica HOM05D005935 ORTHO05D007012 1.6e-48 196.8 110 88.2
Oeu013219.2 Olea europaea HOM05D005935 ORTHO05D007012 5.7e-46 188.3 228 65.8
Pp3c12_7700 Physcomitrium patens HOM05D005935 ORTHO05D007012 8.2e-45 184.5 159 76.7
CSS0024691 Camellia sinensis var. sinensis HOM05D005935 ORTHO05D007012 9.0e-44 181.0 146 71.2
RcHm_v2.0_Chr7g0179971 Rosa chinensis HOM05D005935 ORTHO05D007012 1.8e-39 166.8 144 63.9
CSS0031844 Camellia sinensis var. sinensis HOM05D005935 ORTHO05D007012 7.4e-38 161.4 126 71.4
CSS0034550 Camellia sinensis var. sinensis HOM05D005935 ORTHO05D007012 7.4e-38 161.4 212 63.7
Nitab4.5_0007747g0010 Nicotiana tabacum HOM05D005935 ORTHO05D007012 9.7e-38 161.0 123 86.2
Sabra13G0008800 Salix brachista HOM05D005935 ORTHO05D007012 1.1e-36 157.5 222 47.3
Actinidia35528 Actinidia chinensis HOM05D005935 ORTHO05D007012 4.5e-35 152.1 285 51.6
Cre07.g341650 Chlamydomonas reinhardtii HOM05D005935 ORTHO05D007012 1.4e-31 140.6 231 51.5
CBR_g38440 Chara braunii HOM05D005935 ORTHO05D007012 1.5e-30 137.1 203 45.3
FAN04G2955 Fragaria x ananassa HOM05D005935 ORTHO05D007012 2.3e-23 113.2 155 47.7
MCO03G264 Micromonas commoda HOM05D005935 ORTHO05D007012 5.2e-23 112.1 213 43.7
Zm00001eb307900 Zea mays HOM05D005935 ORTHO05D007012 3.2e-17 92.8 96 76.0
PRCOL_00000245 Prasinoderma coloniale HOM05D005935 ORTHO05D007012 3.6e-16 89.4 214 37.9
Zm00001eb114570 Zea mays HOM05D005935 ORTHO05D007012 1.0e-15 87.8 91 76.9
Zm00001eb180860 Zea mays HOM05D005935 ORTHO05D007012 1.0e-10 71.2 46 80.4
Cfa024511 Carpinus fangiana HOM05D005935 ORTHO05D007012 1.6e-08 63.9 159 28.3


User provided reference genes

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