Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.6G042200 Prunus persica HOM05D003093 ORTHO05D004301 1.5e-52 209.1 101 100.0
Prupe.2G224900 Prunus persica HOM05D003093 ORTHO05D004301 2.1e-46 188.7 99 90.9
Manes.10G038800 Manihot esculenta HOM05D003093 ORTHO05D004301 3.9e-40 167.9 99 78.8
Manes.07G106800 Manihot esculenta HOM05D003093 ORTHO05D004301 2.5e-39 165.2 101 76.2
FAN06G3924 Fragaria x ananassa HOM05D003093 ORTHO05D004301 2.8e-38 161.8 99 75.8
Ciclev10030694m.g Citrus clementina HOM05D003093 ORTHO05D004301 6.3e-38 160.6 98 75.5
Eucgr.G02772 Eucalyptus grandis HOM05D003093 ORTHO05D004301 1.1e-37 159.8 99 73.7
TWI38G0009 Tripterygium wilfordii HOM05D003093 ORTHO05D004301 9.0e-37 156.8 99 70.7
CiPaw.01G280100 Carya illinoinensis HOM05D003093 ORTHO05D004301 1.2e-36 156.4 101 73.3
Glyma.11G012500 Glycine max HOM05D003093 ORTHO05D004301 1.2e-36 156.4 99 71.7
RcHm_v2.0_Chr1g0365041 Rosa chinensis HOM05D003093 ORTHO05D004301 1.2e-36 156.4 99 77.8
Haze_16975 Corylus avellana HOM05D003093 ORTHO05D004301 1.5e-36 156.0 99 71.7
Gohir.D10G218100 Gossypium hirsutum HOM05D003093 ORTHO05D004301 1.5e-36 156.0 99 73.7
Cfa001556 Carpinus fangiana HOM05D003093 ORTHO05D004301 2.6e-36 155.2 99 71.7
CiPaw.02G178700 Carya illinoinensis HOM05D003093 ORTHO05D004301 2.6e-36 155.2 101 72.3
MD01G1117500 Malus domestica HOM05D003093 ORTHO05D004301 2.6e-36 155.2 98 78.6
PSO541G5925 Papaver somniferum HOM05D003093 ORTHO05D004301 2.6e-36 155.2 98 73.5
Thecc.10G062100 Theobroma cacao HOM05D003093 ORTHO05D004301 2.6e-36 155.2 99 71.7
Gohir.A06G177800 Gossypium hirsutum HOM05D003093 ORTHO05D004301 5.9e-36 154.1 99 69.7
Gorai.010G203000 Gossypium raimondii HOM05D003093 ORTHO05D004301 5.9e-36 154.1 99 69.7
PSO675G6375 Papaver somniferum HOM05D003093 ORTHO05D004301 5.9e-36 154.1 98 71.4
Duzib114G0987 Durio zibethinus HOM05D003093 ORTHO05D004301 7.6e-36 153.7 99 71.7
Gohir.D06G173600 Gossypium hirsutum HOM05D003093 ORTHO05D004301 7.6e-36 153.7 99 68.7
Duzib128G1511 Durio zibethinus HOM05D003093 ORTHO05D004301 1.0e-35 153.3 99 70.7
QL08p057653 Quercus lobata HOM05D003093 ORTHO05D004301 1.0e-35 153.3 100 70.0
Sabra10G0165100 Salix brachista HOM05D003093 ORTHO05D004301 1.0e-35 153.3 99 72.7
FAN03G1537 Fragaria x ananassa HOM05D003093 ORTHO05D004301 1.3e-35 152.9 99 74.7
MD07G1185000 Malus domestica HOM05D003093 ORTHO05D004301 1.3e-35 152.9 98 77.6
FAN01G1069 Fragaria x ananassa HOM05D003093 ORTHO05D004301 1.7e-35 152.5 99 74.7
FAN01G1323 Fragaria x ananassa HOM05D003093 ORTHO05D004301 1.7e-35 152.5 99 74.7
FAN10G3079 Fragaria x ananassa HOM05D003093 ORTHO05D004301 1.7e-35 152.5 99 74.7
MELO3C023809.2 Cucumis melo HOM05D003093 ORTHO05D004301 2.2e-35 152.1 99 71.7
Psat6g240760 Pisum sativum HOM05D003093 ORTHO05D004301 2.2e-35 152.1 99 67.7
CSS0040311 Camellia sinensis var. sinensis HOM05D003093 ORTHO05D004301 3.8e-35 151.4 99 69.7
CSS0050146 Camellia sinensis var. sinensis HOM05D003093 ORTHO05D004301 3.8e-35 151.4 99 69.7
FvH4_7g20820 Fragaria vesca HOM05D003093 ORTHO05D004301 3.8e-35 151.4 99 73.7
FAN06G1239 Fragaria x ananassa HOM05D003093 ORTHO05D004301 3.8e-35 151.4 99 73.7
Lj5g0014436 Lotus japonicus HOM05D003093 ORTHO05D004301 3.8e-35 151.4 98 68.4
Potri.008G048000 Populus trichocarpa HOM05D003093 ORTHO05D004301 3.8e-35 151.4 97 71.1
Potri.010G213300 Populus trichocarpa HOM05D003093 ORTHO05D004301 3.8e-35 151.4 97 72.2
Cpa.g.sc1.306 Carica papaya HOM05D003093 ORTHO05D004301 5.0e-35 151.0 98 70.4
Duzib114G0430 Durio zibethinus HOM05D003093 ORTHO05D004301 5.0e-35 151.0 99 69.7
Aqoxy1G01978 Aquilegia oxysepala HOM05D003093 ORTHO05D004301 6.5e-35 150.6 98 70.4
Actinidia38222 Actinidia chinensis HOM05D003093 ORTHO05D004301 8.4e-35 150.2 99 68.7
ECA233G1939 Erigeron canadensis HOM05D003093 ORTHO05D004301 8.4e-35 150.2 96 71.9
Glyma.01G229700 Glycine max HOM05D003093 ORTHO05D004301 8.4e-35 150.2 99 68.7
Sabra08G0034200 Salix brachista HOM05D003093 ORTHO05D004301 8.4e-35 150.2 97 71.1
Lalb_Chr02g0143891 Lupinus albus HOM05D003093 ORTHO05D004301 1.1e-34 149.8 99 67.7
HanXRQChr15g0482981 Helianthus annuus HOM05D003093 ORTHO05D004301 1.4e-34 149.4 96 70.8
Phvul.002G037600 Phaseolus vulgaris HOM05D003093 ORTHO05D004301 1.4e-34 149.4 99 65.7
arahy.Tifrunner.gnm1.ann1.59ZZV8 Arachis hypogaea HOM05D003093 ORTHO05D004301 1.9e-34 149.1 99 67.7
Ca_11321_v3 Cicer arietinum L. HOM05D003093 ORTHO05D004301 1.9e-34 149.1 99 65.7
Glyma.20G241900 Glycine max HOM05D003093 ORTHO05D004301 1.9e-34 149.1 99 66.7
ATR0580G275 Amborella trichopoda HOM05D003093 ORTHO05D004301 2.5e-34 148.7 98 70.4
Gohir.A10G209800 Gossypium hirsutum HOM05D003093 ORTHO05D004301 2.5e-34 148.7 99 70.7
Gorai.011G244700 Gossypium raimondii HOM05D003093 ORTHO05D004301 3.2e-34 148.3 99 70.7
Rhsim03G0125400 Rhododendron simsii HOM05D003093 ORTHO05D004301 4.2e-34 147.9 99 67.7
VMungo0720G2126 Vigna mungo HOM05D003093 ORTHO05D004301 4.2e-34 147.9 99 65.7
Medtr1g115920 Medicago truncatula HOM05D003093 ORTHO05D004301 5.5e-34 147.5 99 65.7
arahy.Tifrunner.gnm1.ann1.YKFK84 Arachis hypogaea HOM05D003093 ORTHO05D004301 7.2e-34 147.1 99 66.7
CsaV3_5G006530 Cucumis sativus L. HOM05D003093 ORTHO05D004301 7.2e-34 147.1 99 68.7
MBI05_g32633_MAGBIO Magnolia biondii HOM05D003093 ORTHO05D004301 7.2e-34 147.1 99 67.7
Nn2g10548 Nelumbo nucifera HOM05D003093 ORTHO05D004301 1.2e-33 146.4 99 65.7
Lalb_Chr21g0307191 Lupinus albus HOM05D003093 ORTHO05D004301 1.6e-33 146.0 99 66.7
Hma1.2p1_0207F.1_g087910 Hydrangea macrophylla HOM05D003093 ORTHO05D004301 2.1e-33 145.6 96 69.8
Cc02_g08600 Coffea canephora HOM05D003093 ORTHO05D004301 2.7e-33 145.2 99 66.7
Phvul.007G008300 Phaseolus vulgaris HOM05D003093 ORTHO05D004301 2.7e-33 145.2 99 65.7
Sed0012201 Sechium edule HOM05D003093 ORTHO05D004301 3.5e-33 144.8 99 66.7
CANSAT78G1625 Cannabis sativa HOM05D003093 ORTHO05D004301 4.6e-33 144.4 101 66.3
PGR142G0268 Punica granatum HOM05D003093 ORTHO05D004301 4.6e-33 144.4 98 68.4
Sc06g0001860 Simmondsia chinensis HOM05D003093 ORTHO05D004301 4.6e-33 144.4 98 66.3
ClCG02G013660 Citrullus lanatus HOM05D003093 ORTHO05D004301 6.1e-33 144.1 99 66.7
Solyc05g054880.3 Solanum lycopersicum HOM05D003093 ORTHO05D004301 7.9e-33 143.7 99 68.7
TAR623G1133 Trochodendron aralioides HOM05D003093 ORTHO05D004301 7.9e-33 143.7 99 66.7
Sopen05g033340 Solanum pennellii HOM05D003093 ORTHO05D004301 1.0e-32 143.3 99 68.7
THA.LOC104827309 Tarenaya hassleriana HOM05D003093 ORTHO05D004301 1.8e-32 142.5 100 65.0
SEGI_10080 Sequoiadendron giganteum HOM05D003093 ORTHO05D004301 2.3e-32 142.1 99 67.7
Lj1A929G70 Lonicera japonica HOM05D003093 ORTHO05D004301 3.0e-32 141.7 99 65.7
GSVIVG01032624001 Vitis vinifera HOM05D003093 ORTHO05D004301 3.0e-32 141.7 99 64.6
CDE10G0582 Ceratophyllum demersum HOM05D003093 ORTHO05D004301 3.9e-32 141.4 101 64.4
Dinv31391 Davidia involucrata HOM05D003093 ORTHO05D004301 3.9e-32 141.4 99 67.7
Hund22428 Selenicereus undatus HOM05D003093 ORTHO05D004301 3.9e-32 141.4 98 65.3
Migut.F00813 Erythranthe guttata HOM05D003093 ORTHO05D004301 5.1e-32 141.0 98 65.3
Oeu009485.1 Olea europaea HOM05D003093 ORTHO05D004301 6.7e-32 140.6 101 65.3
PGSC0003DMG400023507 Solanum tuberosum HOM05D003093 ORTHO05D004301 6.7e-32 140.6 99 66.7
TPR.G10418 Trifolium pratense HOM05D003093 ORTHO05D004301 6.7e-32 140.6 97 64.9
TPR.G11535 Trifolium pratense HOM05D003093 ORTHO05D004301 8.7e-32 140.2 97 62.9
TPR.G27107 Trifolium pratense HOM05D003093 ORTHO05D004301 8.7e-32 140.2 98 63.3
VMungo0720G2412 Vigna mungo HOM05D003093 ORTHO05D004301 8.7e-32 140.2 99 63.6
Ah.10g033320 Amaranthus hybridus HOM05D003093 ORTHO05D004301 1.9e-31 139.0 98 64.3
Peaxi162Scf00015g02612 Petunia axillaris HOM05D003093 ORTHO05D004301 2.5e-31 138.7 99 61.6
SEGI_11595 Sequoiadendron giganteum HOM05D003093 ORTHO05D004301 3.3e-31 138.3 99 66.7
CAN.G546.16 Capsicum annuum HOM05D003093 ORTHO05D004301 4.3e-31 137.9 101 65.3
ECA234G2610 Erigeron canadensis HOM05D003093 ORTHO05D004301 9.7e-31 136.7 96 65.6
HanXRQChr16g0532861 Helianthus annuus HOM05D003093 ORTHO05D004301 9.7e-31 136.7 96 65.6
Os09g0249600 Oryza sativa ssp. japonica HOM05D003093 ORTHO05D004301 9.7e-31 136.7 101 60.4
TPR.G27067 Trifolium pratense HOM05D003093 ORTHO05D004301 3.7e-30 134.8 97 59.8
SalBow3G0936 Salvia bowleyana HOM05D003093 ORTHO05D004301 4.8e-30 134.4 99 60.6
SHI28152 Sapria himalayana HOM05D003093 ORTHO05D000168 4.8e-30 134.4 97 63.9
Sopen06g008290 Solanum pennellii HOM05D003093 ORTHO05D004301 4.8e-30 134.4 101 64.4
PGSC0003DMG400002376 Solanum tuberosum HOM05D003093 ORTHO05D004301 4.8e-30 134.4 101 64.4
TPR.G27039 Trifolium pratense HOM05D003093 ORTHO05D004301 4.8e-30 134.4 99 60.6
Solyc06g036580.4 Solanum lycopersicum HOM05D003093 ORTHO05D004301 6.3e-30 134.0 101 64.4
Oeu039037.3 Olea europaea HOM05D003093 ORTHO05D004301 1.4e-29 132.9 99 63.6
SEGI_36215 Sequoiadendron giganteum HOM05D003093 ORTHO05D004301 1.4e-29 132.9 96 66.7
Medtr4g094355 Medicago truncatula HOM05D003093 ORTHO05D004301 2.4e-29 132.1 99 61.6
Sed0009358 Sechium edule HOM05D003093 ORTHO05D004301 2.4e-29 132.1 99 59.6
unitig_32.g10676 Utricularia gibba HOM05D003093 ORTHO05D004301 3.1e-29 131.7 99 61.6
Lsat_1_v5_gn_3_65860 Lactuca sativa HOM05D003093 ORTHO05D004301 4.1e-29 131.3 98 63.3
CARHR027510 Cardamine hirsuta HOM05D003093 ORTHO05D004301 1.2e-28 129.8 101 59.4
HPP92_019592 Vanilla planifolia HOM05D003093 ORTHO05D004301 1.5e-28 129.4 98 60.2
Nitab4.5_0022203g0010 Nicotiana tabacum HOM05D003093 ORTHO05D004301 2.0e-28 129.0 91 67.0
BcaC05g26621 Brassica carinata HOM05D003093 ORTHO05D004301 2.6e-28 128.6 102 59.8
C05p26730 Brassica napus HOM05D003093 ORTHO05D004301 2.6e-28 128.6 102 59.8
SGA_v2.0_scaffold2G01039 Striga asiatica HOM05D003093 ORTHO05D004301 2.6e-28 128.6 102 59.8
Zm00001eb204030 Zea mays HOM05D003093 ORTHO05D004301 2.6e-28 128.6 101 57.4
Mapoly0014s0207 Marchantia polymorpha HOM05D003093 ORTHO05D004301 3.4e-28 128.3 98 61.2
SalBow8G1202 Salvia bowleyana HOM05D003093 ORTHO05D004301 3.4e-28 128.3 99 57.6
EL10Ac2g03490 Beta vulgaris HOM05D003093 ORTHO05D004301 4.5e-28 127.9 98 59.2
A09p38030 Brassica napus HOM05D003093 ORTHO05D004301 7.7e-28 127.1 102 58.8
BraA09t39313Z Brassica rapa HOM05D003093 ORTHO05D004301 7.7e-28 127.1 102 58.8
Carub.0001s2649 Capsella rubella HOM05D003093 ORTHO05D004301 7.7e-28 127.1 101 58.4
AT1G28060 Arabidopsis thaliana HOM05D003093 ORTHO05D004301 1.0e-27 126.7 100 57.0
AL1G41570 Arabidopsis lyrata HOM05D003093 ORTHO05D004301 1.3e-27 126.3 98 56.1
BolC5t31397H Brassica oleracea HOM05D003093 ORTHO05D004301 1.3e-27 126.3 102 58.8
C03p74710 Brassica napus HOM05D003093 ORTHO05D004301 1.7e-27 125.9 99 60.6
TAR320G0003 Trochodendron aralioides HOM05D003093 ORTHO05D004301 1.7e-27 125.9 99 59.6
Zm00001eb238080 Zea mays HOM05D003093 ORTHO05D004301 1.7e-27 125.9 97 56.7
Aa31sc146G40 Aethionema arabicum HOM05D003093 ORTHO05D004301 3.8e-27 124.8 98 59.2
BcaC05g26809 Brassica carinata HOM05D003093 ORTHO05D004301 3.8e-27 124.8 102 58.8
Sp1g24240 Schrenkiella parvula HOM05D003093 ORTHO05D004301 3.8e-27 124.8 102 57.8
SGA_v2.0_scaffold221G42698 Striga asiatica HOM05D003093 ORTHO05D004301 6.5e-27 124.0 103 58.3
BcaC01g00003 Brassica carinata HOM05D003093 ORTHO05D004301 1.4e-26 122.9 102 56.9
BolC3t19719H Brassica oleracea HOM05D003093 ORTHO05D004301 1.4e-26 122.9 102 56.9
Thhalv10006834m.g Eutrema salsugineum HOM05D003093 ORTHO05D004301 1.9e-26 122.5 102 57.8
A08p25940 Brassica napus HOM05D003093 ORTHO05D004301 3.2e-26 121.7 102 55.9
BraA08t34545Z Brassica rapa HOM05D003093 ORTHO05D004301 3.2e-26 121.7 102 55.9
Pp3c14_26820 Physcomitrium patens HOM05D003093 ORTHO05D004301 3.6e-25 118.2 99 56.6
TPR.G40489 Trifolium pratense HOM05D003093 ORTHO05D004301 1.4e-24 116.3 97 55.7
AagrBONN_evm.TU.Sc2ySwM_117.140 Anthoceros agrestis HOM05D003093 ORTHO05D004301 1.8e-24 115.9 98 56.1
Rhsim09G0156000 Rhododendron simsii HOM05D003093 ORTHO05D004301 3.0e-24 115.2 98 52.0
CBR_g41418 Chara braunii HOM05D003093 ORTHO05D004301 1.7e-22 109.4 97 54.6
SMO340G0141 Selaginella moellendorffii HOM05D003093 ORTHO05D004301 3.7e-22 108.2 101 49.5
AT3G55930 Arabidopsis thaliana HOM05D003093 ORTHO05D004301 1.1e-21 106.7 95 52.6
AL5G37210 Arabidopsis lyrata HOM05D003093 ORTHO05D004301 1.4e-21 106.3 94 53.2
Carub.0005s2292 Capsella rubella HOM05D003093 ORTHO05D004301 1.8e-21 105.9 97 49.5
Lj2A860T8 Lonicera japonica HOM05D003093 ORTHO05D019262 7.7e-20 100.5 95 45.3
unitig_88.g27762 Utricularia gibba HOM05D003093 ORTHO05D004301 1.0e-19 100.1 87 58.6
Lj2P843T9 Lonicera japonica HOM05D003093 ORTHO05D019262 5.0e-19 97.8 97 46.4
Lj2A862T14 Lonicera japonica HOM05D003093 ORTHO05D019262 1.9e-18 95.9 97 41.2
Atru.chr12.590 Acer truncatum HOM05D003093 ORTHO05D004301 3.1e-13 78.6 59 64.4
Cre09.g416000 Chlamydomonas reinhardtii HOM05D003093 ORTHO05D004301 2.9e-11 72.0 110 31.8
Lj2A846T19 Lonicera japonica HOM05D003093 ORTHO05D019262 3.6e-09 65.1 97 37.1
Lj2A842G6 Lonicera japonica HOM05D003093 ORTHO05D019262 5.2e-08 61.2 65 38.5
TPR.G27025 Trifolium pratense HOM05D003093 ORTHO05D410825 2.6e-07 58.9 49 55.1
Cfa024969 Carpinus fangiana HOM05D003093 ORTHO05D004301 1.3e-06 56.6 111 27.0
PRCOL_00003477 Prasinoderma coloniale HOM05D003093 ORTHO05D004301 6.3e-06 54.3 100 32.0


User provided reference genes

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