Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.4G089600 Prunus persica HOM05D005639 ORTHO05D007234 8.5e-272 939.9 524 100.0
MD10G1254000 Malus domestica HOM05D005639 ORTHO05D007234 5.2e-229 797.7 527 85.0
MD05G1274300 Malus domestica HOM05D005639 ORTHO05D007234 2.5e-207 725.7 522 78.7
FvH4_3g09990 Fragaria vesca HOM05D005639 ORTHO05D007234 1.4e-194 683.3 530 75.8
Cfa016817 Carpinus fangiana HOM05D005639 ORTHO05D007234 1.1e-191 673.7 518 75.3
FAN25G3670 Fragaria x ananassa HOM05D005639 ORTHO05D007234 1.9e-191 672.9 521 76.6
FAN21G2832 Fragaria x ananassa HOM05D005639 ORTHO05D007234 1.8e-189 666.4 518 75.5
Ciclev10014949m.g Citrus clementina HOM05D005639 ORTHO05D007234 1.5e-188 663.3 517 73.3
Atru.chr10.888 Acer truncatum HOM05D005639 ORTHO05D007234 3.4e-188 662.1 521 73.3
Haze_19855 Corylus avellana HOM05D005639 ORTHO05D007234 2.2e-187 659.4 539 72.5
CiPaw.04G138400 Carya illinoinensis HOM05D005639 ORTHO05D007234 9.3e-186 654.1 515 72.6
RcHm_v2.0_Chr5g0015871 Rosa chinensis HOM05D005639 ORTHO05D007234 3.0e-184 649.0 445 82.0
CsaV3_5G039540 Cucumis sativus L. HOM05D005639 ORTHO05D007234 3.9e-184 648.7 514 72.8
GSVIVG01021618001 Vitis vinifera HOM05D005639 ORTHO05D007234 5.1e-184 648.3 507 71.6
ClCG08G001610 Citrullus lanatus HOM05D005639 ORTHO05D007234 1.1e-183 647.1 507 73.2
FAN16G1271 Fragaria x ananassa HOM05D005639 ORTHO05D007234 2.5e-183 646.0 533 68.1
Cpa.g.sc19.212 Carica papaya HOM05D005639 ORTHO05D007234 2.6e-180 636.0 524 69.1
Sed0017304 Sechium edule HOM05D005639 ORTHO05D007234 4.5e-180 635.2 516 70.5
FAN11G3706 Fragaria x ananassa HOM05D005639 ORTHO05D007234 8.5e-179 630.9 519 69.0
TWI73G0023 Tripterygium wilfordii HOM05D005639 ORTHO05D007234 1.6e-177 626.7 521 68.9
Dinv03058 Davidia involucrata HOM05D005639 ORTHO05D007234 7.9e-177 624.4 515 70.9
Sed0027243 Sechium edule HOM05D005639 ORTHO05D007234 3.9e-176 622.1 522 71.3
TWI09G1293 Tripterygium wilfordii HOM05D005639 ORTHO05D007234 7.4e-175 617.8 516 68.8
Rhsim13G0120200 Rhododendron simsii HOM05D005639 ORTHO05D007234 8.2e-174 614.4 515 68.7
Dinv01990 Davidia involucrata HOM05D005639 ORTHO05D007234 3.1e-173 612.5 503 71.4
Nn5g27628 Nelumbo nucifera HOM05D005639 ORTHO05D007234 1.2e-172 610.5 522 68.4
Eucgr.D00190 Eucalyptus grandis HOM05D005639 ORTHO05D007234 5.9e-172 608.2 531 66.9
Thecc.06G000900 Theobroma cacao HOM05D005639 ORTHO05D007234 3.2e-170 602.4 519 67.1
DCAR_003859 Daucus carota HOM05D005639 ORTHO05D007234 4.2e-170 602.1 521 66.8
MELO3C022131.2 Cucumis melo HOM05D005639 ORTHO05D007234 5.5e-170 601.7 489 71.4
QL03p009300 Quercus lobata HOM05D005639 ORTHO05D007234 9.4e-170 600.9 632 55.9
vmacro03396 Vaccinium macrocarpon HOM05D005639 ORTHO05D007234 2.1e-169 599.7 522 68.4
COL.COLO4_26825 Corchorus olitorius HOM05D005639 ORTHO05D007234 1.0e-168 597.4 518 66.0
CSS0044875 Camellia sinensis var. sinensis HOM05D005639 ORTHO05D007234 2.8e-166 589.3 526 66.7
Actinidia36001 Actinidia chinensis HOM05D005639 ORTHO05D007234 4.8e-166 588.6 517 68.5
Gorai.005G118400 Gossypium raimondii HOM05D005639 ORTHO05D007234 1.8e-165 586.6 517 65.8
Gohir.A02G094000 Gossypium hirsutum HOM05D005639 ORTHO05D007234 7.0e-165 584.7 518 65.4
Lalb_Chr18g0057911 Lupinus albus HOM05D005639 ORTHO05D007234 7.0e-165 584.7 511 68.1
PGR083G2688 Punica granatum HOM05D005639 ORTHO05D007234 7.0e-165 584.7 521 66.4
VMungo0540G0794 Vigna mungo HOM05D005639 ORTHO05D007234 1.2e-164 583.9 502 67.9
Lj6g0009484 Lotus japonicus HOM05D005639 ORTHO05D007234 2.6e-164 582.8 501 68.7
Gohir.D02G104300 Gossypium hirsutum HOM05D005639 ORTHO05D007234 4.5e-164 582.0 517 65.2
THA.LOC104812393 Tarenaya hassleriana HOM05D005639 ORTHO05D007234 5.9e-164 581.6 522 65.1
Phvul.006G129100 Phaseolus vulgaris HOM05D005639 ORTHO05D007234 4.2e-162 575.5 503 68.2
Lsat_1_v5_gn_4_3900 Lactuca sativa HOM05D005639 ORTHO05D007234 5.5e-162 575.1 526 64.6
MSTRG.13266 Avicennia marina HOM05D005639 ORTHO05D007234 3.6e-161 572.4 520 66.9
THA.LOC104806253 Tarenaya hassleriana HOM05D005639 ORTHO05D007234 1.0e-160 570.9 445 70.8
Hma1.2p1_0333F.1_g128320 Hydrangea macrophylla HOM05D005639 ORTHO05D007234 1.2e-159 567.4 520 65.6
Hund22392 Selenicereus undatus HOM05D005639 ORTHO05D007234 4.4e-159 565.5 511 64.2
Sc24g0001380 Simmondsia chinensis HOM05D005639 ORTHO05D007234 2.2e-158 563.1 524 65.1
HanXRQChr17g0569471 Helianthus annuus HOM05D005639 ORTHO05D007234 3.1e-157 559.3 517 64.2
Peaxi162Scf00670g00332 Petunia axillaris HOM05D005639 ORTHO05D007234 1.6e-156 557.0 433 73.9
Psat1g168120 Pisum sativum HOM05D005639 ORTHO05D007234 7.7e-156 554.7 510 65.3
Potri.005G061000 Populus trichocarpa HOM05D005639 ORTHO05D007234 1.3e-155 553.9 439 70.2
Migut.H01334 Erythranthe guttata HOM05D005639 ORTHO05D007234 3.8e-155 552.4 403 74.4
Nitab4.5_0004077g0020 Nicotiana tabacum HOM05D005639 ORTHO05D007234 3.8e-155 552.4 435 72.2
arahy.Tifrunner.gnm1.ann1.JS3IU7 Arachis hypogaea HOM05D005639 ORTHO05D007234 8.5e-155 551.2 517 64.6
PSO675G8746 Papaver somniferum HOM05D005639 ORTHO05D007234 3.2e-154 549.3 525 63.6
Nitab4.5_0002719g0080 Nicotiana tabacum HOM05D005639 ORTHO05D007234 5.5e-154 548.5 434 72.1
Potri.007G107900 Populus trichocarpa HOM05D005639 ORTHO05D007234 1.6e-153 547.0 520 63.8
Cc09_g08220 Coffea canephora HOM05D005639 ORTHO05D007234 8.0e-153 544.7 536 62.7
ECA234G3170 Erigeron canadensis HOM05D005639 ORTHO05D007234 1.0e-152 544.3 446 69.1
PSO541G1457 Papaver somniferum HOM05D005639 ORTHO05D007234 1.2e-151 540.8 528 64.0
Manes.13G081200 Manihot esculenta HOM05D005639 ORTHO05D007234 3.4e-151 539.3 525 65.9
Sabra05G0051400 Salix brachista HOM05D005639 ORTHO05D007234 3.4e-151 539.3 518 60.4
PGSC0003DMG402021193 Solanum tuberosum HOM05D005639 ORTHO05D007234 3.4e-151 539.3 523 62.7
Glyma.09G023100 Glycine max HOM05D005639 ORTHO05D007234 7.5e-151 538.1 439 69.9
SGA_v2.0_scaffold106G30666 Striga asiatica HOM05D005639 ORTHO05D007234 1.7e-150 537.0 435 70.6
Medtr2g029940 Medicago truncatula HOM05D005639 ORTHO05D007234 8.3e-150 534.6 496 64.5
arahy.Tifrunner.gnm1.ann1.MSHM5J Arachis hypogaea HOM05D005639 ORTHO05D007234 2.7e-148 529.6 557 59.8
Solyc02g069770.3 Solanum lycopersicum HOM05D005639 ORTHO05D007234 1.3e-147 527.3 523 63.3
Sopen02g018930 Solanum pennellii HOM05D005639 ORTHO05D007234 1.7e-147 526.9 523 63.1
Sabra07G0088400 Salix brachista HOM05D005639 ORTHO05D007234 2.9e-147 526.2 518 63.3
Ca_00807_v3 Cicer arietinum L. HOM05D005639 ORTHO05D007234 1.1e-146 524.2 398 71.6
Ah.14g085710 Amaranthus hybridus HOM05D005639 ORTHO05D007234 1.9e-146 523.5 505 60.4
SalBow7G3138 Salvia bowleyana HOM05D005639 ORTHO05D007234 1.9e-146 523.5 560 60.5
Aqoxy1G01607 Aquilegia oxysepala HOM05D005639 ORTHO05D007234 2.5e-146 523.1 434 69.1
HPP92_013994 Vanilla planifolia HOM05D005639 ORTHO05D007234 2.5e-146 523.1 528 61.0
ATR0165G031 Amborella trichopoda HOM05D005639 ORTHO05D007234 3.2e-146 522.7 520 60.6
CiPaw.02G032400 Carya illinoinensis HOM05D005639 ORTHO05D007234 4.2e-146 522.3 521 59.1
TAR626G0701 Trochodendron aralioides HOM05D005639 ORTHO05D007234 1.2e-143 514.2 381 73.8
Aa31LG9G9170 Aethionema arabicum HOM05D005639 ORTHO05D007234 1.5e-143 513.8 452 69.2
CiPaw.10G033400 Carya illinoinensis HOM05D005639 ORTHO05D007234 3.1e-141 506.1 540 57.4
AT4G21130 Arabidopsis thaliana HOM05D005639 ORTHO05D007234 4.5e-140 502.3 516 53.9
Sp6g03680 Schrenkiella parvula HOM05D005639 ORTHO05D007234 1.1e-138 497.7 523 61.4
Thhalv10028589m.g Eutrema salsugineum HOM05D005639 ORTHO05D007234 1.5e-138 497.3 479 62.0
unitig_8.g4887 Utricularia gibba HOM05D005639 ORTHO05D007234 9.5e-138 494.6 523 59.3
CARHR252170 Cardamine hirsuta HOM05D005639 ORTHO05D007234 1.6e-137 493.8 517 59.8
AL7G32990 Arabidopsis lyrata HOM05D005639 ORTHO05D007234 3.4e-135 486.1 517 55.3
AUR62033065 Chenopodium quinoa HOM05D005639 ORTHO05D007234 2.4e-133 479.9 410 63.2
CDE05G0927 Ceratophyllum demersum HOM05D005639 ORTHO05D007234 4.1e-133 479.2 520 58.5
C09p32350 Brassica napus HOM05D005639 ORTHO05D007234 3.3e-130 469.5 515 58.4
Oeu030450.1 Olea europaea HOM05D005639 ORTHO05D007234 4.3e-130 469.2 497 53.7
Zm00001eb218720 Zea mays HOM05D005639 ORTHO05D007234 5.6e-130 468.8 488 59.6
Carub.0006s3332 Capsella rubella HOM05D005639 ORTHO05D007234 7.3e-130 468.4 478 55.0
BcaB01g02559 Brassica carinata HOM05D005639 ORTHO05D007234 1.6e-129 467.2 517 60.2
BraA09t38117Z Brassica rapa HOM05D005639 ORTHO05D007234 6.2e-129 465.3 513 57.9
BolC9t56080H Brassica oleracea HOM05D005639 ORTHO05D007234 1.1e-128 464.5 513 56.7
AL6G49000 Arabidopsis lyrata HOM05D005639 ORTHO05D007234 1.8e-128 463.8 478 59.2
A03p30310 Brassica napus HOM05D005639 ORTHO05D007234 1.8e-128 463.8 517 60.2
AT4G05410 Arabidopsis thaliana HOM05D005639 ORTHO05D007234 6.8e-128 461.8 478 59.8
C03p36580 Brassica napus HOM05D005639 ORTHO05D007234 2.6e-127 459.9 523 59.1
A09p25350 Brassica napus HOM05D005639 ORTHO05D007234 4.4e-127 459.1 513 57.7
EL10Ac4g08968 Beta vulgaris HOM05D005639 ORTHO05D007234 7.5e-127 458.4 479 61.2
BolC3t15973H Brassica oleracea HOM05D005639 ORTHO05D007234 1.6e-124 450.7 522 56.9
BcaC01g06663 Brassica carinata HOM05D005639 ORTHO05D007234 4.6e-124 449.1 521 56.8
Zm00001eb050650 Zea mays HOM05D005639 ORTHO05D007234 1.3e-123 447.6 443 61.2
BraA03t12214Z Brassica rapa HOM05D005639 ORTHO05D007234 1.7e-123 447.2 521 57.6
AUR62042204 Chenopodium quinoa HOM05D005639 ORTHO05D007234 9.5e-122 441.4 411 59.6
Mapoly0012s0170 Marchantia polymorpha HOM05D005639 ORTHO05D007234 2.8e-121 439.9 510 56.9
Os03g0625900 Oryza sativa ssp. japonica HOM05D005639 ORTHO05D007234 7.5e-119 431.8 401 62.1
vmacro03440 Vaccinium macrocarpon HOM05D005639 ORTHO05D007234 2.2e-118 430.3 507 52.1
AagrBONN_evm.TU.Sc2ySwM_228.3905 Anthoceros agrestis HOM05D005639 ORTHO05D007234 7.6e-111 405.2 430 58.1
Pp3c13_22280 Physcomitrium patens HOM05D005639 ORTHO05D007234 3.1e-104 383.3 491 51.5
Pp3c15_1000 Physcomitrium patens HOM05D005639 ORTHO05D007234 1.3e-102 377.9 536 48.9
HanXRQChr13g0407861 Helianthus annuus HOM05D005639 ORTHO05D007234 5.4e-93 345.9 355 62.0
Glyma.15G129100 Glycine max HOM05D005639 ORTHO05D007234 7.4e-90 335.5 261 60.9
SMO146G0033 Selaginella moellendorffii HOM05D005639 ORTHO05D007234 8.1e-89 332.0 434 50.5
Actinidia13477 Actinidia chinensis HOM05D005639 ORTHO05D007234 2.5e-82 310.5 283 63.6
CBR_g50978 Chara braunii HOM05D005639 ORTHO05D007234 2.8e-81 307.0 554 43.7
Actinidia13478 Actinidia chinensis HOM05D005639 ORTHO05D007234 4.2e-69 266.5 187 69.0
MCO15G200 Micromonas commoda HOM05D005639 ORTHO05D007234 1.8e-64 251.1 472 35.8
PRCOL_00004480 Prasinoderma coloniale HOM05D005639 ORTHO05D007234 2.9e-54 217.2 496 36.3
C06p38580 Brassica napus HOM05D005639 ORTHO05D007234 2.1e-52 211.1 279 44.8
Duzib235G0447 Durio zibethinus HOM05D005639 ORTHO05D007234 5.3e-48 196.4 226 47.3
BolC6t38950H Brassica oleracea HOM05D005639 ORTHO05D007234 1.5e-45 188.3 261 44.4
Cre06.g278175 Chlamydomonas reinhardtii HOM05D005639 ORTHO05D007234 2.2e-41 174.5 540 29.3
BcaB01g02186 Brassica carinata HOM05D005639 ORTHO05D007234 5.9e-23 113.2 133 45.9
Cfa027057 Carpinus fangiana HOM05D005639 ORTHO05D007234 1.0e-19 102.4 603 24.9
BcaC04g22046 Brassica carinata HOM05D001874 ORTHO05D002166 2.6e-18 97.8 85 55.3
BcaB07g31331 Brassica carinata HOM05D005639 ORTHO05D007234 5.8e-18 96.7 84 54.8
A08p03340 Brassica napus HOM05D005639 ORTHO05D001462 1.7e-17 95.1 119 47.1
C08p21980 Brassica napus HOM05D005639 ORTHO05D002166 5.4e-16 90.1 165 38.2
A01p33050 Brassica napus HOM05D001874 ORTHO05D002166 1.7e-14 85.1 166 35.5
BcaB03g11915 Brassica carinata HOM05D005639 ORTHO05D007234 3.1e-11 74.3 133 34.6
Nitab4.5_0002059g0020 Nicotiana tabacum HOM05D000453 ORTHO05D000387 2.4e-08 64.7 116 34.5
Duzib235G0476 Durio zibethinus HOM05D005639 ORTHO05D007234 7.0e-08 63.2 105 48.6
Rhsim12G0161600 Rhododendron simsii HOM05D000453 ORTHO05D000387 1.0e-06 59.3 115 33.9
unitig_8.g3367 Utricularia gibba HOM05D002634 ORTHO05D003100 5.1e-06 57.0 90 36.7


User provided reference genes

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