Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.4G073700 Prunus persica HOM05D007300 ORTHO05D009301 0.0e+00 1316.2 669 100.0
MD05G1291800 Malus domestica HOM05D007300 ORTHO05D009301 0.0e+00 1109.0 693 82.3
RcHm_v2.0_Chr5g0012901 Rosa chinensis HOM05D007300 ORTHO05D009301 3.1e-295 1018.1 675 78.2
FvH4_3g06410 Fragaria vesca HOM05D007300 ORTHO05D009301 3.8e-293 1011.1 673 77.7
FAN21G2574 Fragaria x ananassa HOM05D007300 ORTHO05D009301 1.5e-292 1009.2 673 77.6
FAN11G2841 Fragaria x ananassa HOM05D007300 ORTHO05D009301 5.6e-284 980.7 734 71.1
CiPaw.10G096200 Carya illinoinensis HOM05D007300 ORTHO05D009301 2.2e-256 889.0 676 67.8
QL05p060322 Quercus lobata HOM05D007300 ORTHO05D009301 2.6e-249 865.5 672 67.1
Cfa001024 Carpinus fangiana HOM05D007300 ORTHO05D009301 2.5e-244 849.0 675 66.8
GSVIVG01021378001 Vitis vinifera HOM05D007300 ORTHO05D009301 9.0e-234 813.9 673 62.7
CANSAT35G1474 Cannabis sativa HOM05D007300 ORTHO05D009301 6.5e-232 807.7 682 64.2
Potri.001G353800 Populus trichocarpa HOM05D007300 ORTHO05D009301 1.1e-228 797.0 681 61.7
Thecc.06G157700 Theobroma cacao HOM05D007300 ORTHO05D009301 3.3e-228 795.4 678 61.9
Haze_05485 Corylus avellana HOM05D007300 ORTHO05D009301 2.4e-226 789.3 780 57.4
Gohir.D10G038600 Gossypium hirsutum HOM05D007300 ORTHO05D009301 3.1e-226 788.9 684 62.0
Gorai.011G040700 Gossypium raimondii HOM05D007300 ORTHO05D009301 9.0e-226 787.3 676 62.1
Dinv32299 Davidia involucrata HOM05D007300 ORTHO05D009301 1.0e-224 783.9 664 63.3
TWI73G0852 Tripterygium wilfordii HOM05D007300 ORTHO05D009301 3.8e-224 781.9 674 59.8
Gohir.A10G037600 Gossypium hirsutum HOM05D007300 ORTHO05D009301 4.6e-222 775.0 684 61.3
COL.COLO4_22798 Corchorus olitorius HOM05D007300 ORTHO05D009301 6.3e-219 764.6 679 61.9
ClCG03G007190 Citrullus lanatus HOM05D007300 ORTHO05D009301 4.1e-218 761.9 673 58.5
TAR627G1006 Trochodendron aralioides HOM05D007300 ORTHO05D009301 6.9e-218 761.1 671 59.9
Sabra16G0232700 Salix brachista HOM05D007300 ORTHO05D009301 1.1e-215 753.8 688 58.6
Manes.17G064900 Manihot esculenta HOM05D007300 ORTHO05D009301 1.6e-214 750.0 665 60.2
CSS0020184 Camellia sinensis var. sinensis HOM05D007300 ORTHO05D009301 2.3e-213 746.1 672 59.5
CsaV3_1G032780 Cucumis sativus L. HOM05D007300 ORTHO05D009301 1.1e-212 743.8 675 58.5
Ciclev10014510m.g Citrus clementina HOM05D007300 ORTHO05D009301 4.4e-212 741.9 674 59.5
Actinidia19486 Actinidia chinensis HOM05D007300 ORTHO05D009301 1.0e-208 730.7 672 58.3
FAN16G1565 Fragaria x ananassa HOM05D007300 ORTHO05D009301 1.7e-208 729.9 488 77.9
Atru.chr10.1398 Acer truncatum HOM05D007300 ORTHO05D009301 4.8e-203 711.8 561 64.9
Cpa.g.sc17.110 Carica papaya HOM05D007300 ORTHO05D009301 9.1e-202 707.6 642 57.0
Duzib235G1110 Durio zibethinus HOM05D007300 ORTHO05D009301 2.9e-200 702.6 677 55.7
Aqoxy1G01857 Aquilegia oxysepala HOM05D007300 ORTHO05D009301 3.8e-200 702.2 674 55.9
Atru.chr10.1407 Acer truncatum HOM05D007300 ORTHO05D009301 2.5e-199 699.5 561 64.0
arahy.Tifrunner.gnm1.ann1.D64P8M Arachis hypogaea HOM05D007300 ORTHO05D009301 7.5e-196 688.0 630 58.4
Nitab4.5_0003714g0040 Nicotiana tabacum HOM05D007300 ORTHO05D009301 1.7e-195 686.8 675 55.7
arahy.Tifrunner.gnm1.ann1.FQ35JE Arachis hypogaea HOM05D007300 ORTHO05D009301 6.3e-195 684.9 642 57.3
Ca_17871_v3 Cicer arietinum L. HOM05D007300 ORTHO05D009301 2.4e-194 682.9 610 57.7
Nitab4.5_0001283g0060 Nicotiana tabacum HOM05D007300 ORTHO05D009301 2.4e-194 682.9 667 56.4
Glyma.08G121900 Glycine max HOM05D007300 ORTHO05D009301 2.0e-193 679.9 617 58.3
Medtr8g088030 Medicago truncatula HOM05D007300 ORTHO05D009301 2.7e-193 679.5 663 54.4
Lj4g0024386 Lotus japonicus HOM05D007300 ORTHO05D009301 5.0e-192 675.2 669 55.0
Eucgr.D00343 Eucalyptus grandis HOM05D007300 ORTHO05D009301 4.2e-191 672.2 684 52.5
Glyma.05G164500 Glycine max HOM05D007300 ORTHO05D009301 4.7e-190 668.7 628 57.5
Lalb_Chr13g0295471 Lupinus albus HOM05D007300 ORTHO05D009301 6.1e-190 668.3 676 54.7
THA.LOC104827733 Tarenaya hassleriana HOM05D007300 ORTHO05D009301 8.8e-189 664.5 682 52.6
Peaxi162Scf00649g00027 Petunia axillaris HOM05D007300 ORTHO05D009301 2.6e-188 662.9 609 57.8
Lsat_1_v5_gn_7_31040 Lactuca sativa HOM05D007300 ORTHO05D009301 7.5e-188 661.4 660 53.9
PGSC0003DMG400003073 Solanum tuberosum HOM05D007300 ORTHO05D009301 1.7e-187 660.2 669 54.9
CAN.G257.51 Capsicum annuum HOM05D007300 ORTHO05D009301 4.8e-187 658.7 667 54.1
TPR.G6793 Trifolium pratense HOM05D007300 ORTHO05D009301 4.8e-187 658.7 617 56.1
Oeu021524.1 Olea europaea HOM05D007300 ORTHO05D009301 6.3e-187 658.3 609 57.5
Nn3g20905 Nelumbo nucifera HOM05D007300 ORTHO05D009301 3.1e-186 656.0 634 56.2
Phvul.002G244500 Phaseolus vulgaris HOM05D007300 ORTHO05D009301 1.6e-185 653.7 673 54.1
Solyc02g071280.3 Solanum lycopersicum HOM05D007300 ORTHO05D009301 1.6e-185 653.7 670 54.3
DCAR_027959 Daucus carota HOM05D007300 ORTHO05D009301 1.3e-184 650.6 613 57.9
Sopen02g020340 Solanum pennellii HOM05D007300 ORTHO05D009301 5.0e-184 648.7 670 53.9
Carub.0008s0147 Capsella rubella HOM05D007300 ORTHO05D009301 1.1e-183 647.5 678 51.0
Thhalv10000812m.g Eutrema salsugineum HOM05D007300 ORTHO05D009301 7.2e-183 644.8 683 51.0
HanXRQChr04g0119571 Helianthus annuus HOM05D007300 ORTHO05D009301 2.1e-182 643.3 673 51.9
Psat7g066760 Pisum sativum HOM05D007300 ORTHO05D009301 2.1e-182 643.3 645 52.4
Lj1C1181T32 Lonicera japonica HOM05D007300 ORTHO05D009301 3.6e-182 642.5 676 53.8
AT5G46420 Arabidopsis thaliana HOM05D007300 ORTHO05D009301 1.4e-181 640.6 679 50.7
MBI10_g02388_MAGBIO Magnolia biondii HOM05D007300 ORTHO05D009301 3.0e-181 639.4 681 52.0
PSO541G4163 Papaver somniferum HOM05D007300 ORTHO05D009301 4.0e-181 639.0 617 55.4
A06p45940 Brassica napus HOM05D007300 ORTHO05D009301 2.0e-180 636.7 684 50.7
BolC7t43517H Brassica oleracea HOM05D007300 ORTHO05D009301 5.7e-180 635.2 679 50.8
C07p29650 Brassica napus HOM05D007300 ORTHO05D009301 1.3e-179 634.0 679 50.7
CARHR175340 Cardamine hirsuta HOM05D007300 ORTHO05D009301 1.7e-179 633.6 677 51.0
ECA236G2360 Erigeron canadensis HOM05D007300 ORTHO05D009301 1.7e-179 633.6 667 50.7
VMungo0251G3397 Vigna mungo HOM05D007300 ORTHO05D009301 2.8e-179 632.9 622 55.9
Sc05g0006590 Simmondsia chinensis HOM05D007300 ORTHO05D009301 3.1e-178 629.4 670 51.5
Sp2g11270 Schrenkiella parvula HOM05D007300 ORTHO05D009301 1.2e-177 627.5 680 50.3
AL8G11990 Arabidopsis lyrata HOM05D007300 ORTHO05D009301 5.9e-177 625.2 683 50.1
BraA06t27457Z Brassica rapa HOM05D007300 ORTHO05D009301 5.0e-176 622.1 668 50.6
Aa31LG9G6430 Aethionema arabicum HOM05D007300 ORTHO05D009301 4.3e-175 619.0 684 49.0
Migut.M00959 Erythranthe guttata HOM05D007300 ORTHO05D009301 4.7e-174 615.5 680 50.4
SalBow8G1735 Salvia bowleyana HOM05D007300 ORTHO05D009301 7.0e-170 601.7 627 51.8
AUR62027555 Chenopodium quinoa HOM05D007300 ORTHO05D009301 1.2e-169 600.9 612 52.1
PGR044G1273 Punica granatum HOM05D007300 ORTHO05D009301 8.6e-168 594.7 564 55.9
SGA_v2.0_scaffold1G00132 Striga asiatica HOM05D007300 ORTHO05D009301 4.7e-166 589.0 675 50.4
AUR62035801 Chenopodium quinoa HOM05D007300 ORTHO05D009301 1.4e-165 587.4 612 51.3
ATR1153G036 Amborella trichopoda HOM05D007300 ORTHO05D009301 2.3e-144 516.9 676 44.2
EL10Ac8g19794 Beta vulgaris HOM05D007300 ORTHO05D009301 5.1e-144 515.8 612 48.4
HPP92_023296 Vanilla planifolia HOM05D007300 ORTHO05D009301 1.9e-138 497.3 618 46.0
Sed0024786 Sechium edule HOM05D007300 ORTHO05D009301 2.0e-132 477.2 460 56.5
PSO675G3105 Papaver somniferum HOM05D007300 ORTHO05D009301 3.7e-110 403.3 361 59.3
unitig_92.g28150 Utricularia gibba HOM05D007300 ORTHO05D009301 8.2e-110 402.1 602 41.5
SEGI_38698 Sequoiadendron giganteum HOM05D007300 ORTHO05D009301 2.1e-105 387.5 666 34.2
MELO3C002704.2 Cucumis melo HOM05D007300 ORTHO05D009301 5.1e-104 382.9 362 54.4
HPP92_023271 Vanilla planifolia HOM05D007300 ORTHO05D009301 1.7e-99 367.9 611 37.8
Mapoly0019s0078 Marchantia polymorpha HOM05D007300 ORTHO05D009301 8.0e-81 305.8 682 30.8
Zm00001eb296050 Zea mays HOM05D007300 ORTHO05D009301 1.0e-75 288.9 424 40.3
CDE06G2820 Ceratophyllum demersum HOM05D007300 ORTHO05D009301 2.2e-75 287.7 305 52.1
Pp3c15_14250 Physcomitrium patens HOM05D007300 ORTHO05D009301 2.2e-75 287.7 539 33.6
AagrBONN_evm.TU.Sc2ySwM_228.1844 Anthoceros agrestis HOM05D007300 ORTHO05D004905 5.7e-71 273.1 528 34.1
Os05g0566300 Oryza sativa ssp. japonica HOM05D007300 ORTHO05D009301 4.1e-61 240.4 206 56.3
Gorai.004G093400 Gossypium raimondii HOM05D007300 ORTHO05D009301 7.5e-47 193.0 167 59.3
Gohir.D08G088700 Gossypium hirsutum HOM05D007300 ORTHO05D009301 1.3e-46 192.2 167 59.3
Zm00001eb349440 Zea mays HOM05D007300 ORTHO05D009301 1.1e-42 179.1 177 50.8
SEGI_17563 Sequoiadendron giganteum HOM05D007300 ORTHO05D009301 1.7e-35 155.2 122 55.7
MCO05G669 Micromonas commoda HOM05D007300 ORTHO05D009301 1.2e-25 122.5 225 33.8
CDE06G1765 Ceratophyllum demersum HOM05D007300 ORTHO05D009301 4.0e-24 117.5 155 41.9
Zm00001eb184690 Zea mays HOM05D007300 ORTHO05D009301 5.1e-19 100.5 83 51.8
Cre03.g191950 Chlamydomonas reinhardtii HOM05D007300 ORTHO05D009301 3.3e-18 97.8 212 32.1
THA.LOC104798460 Tarenaya hassleriana HOM05D007300 ORTHO05D009301 1.8e-16 92.0 130 41.5
AagrBONN_evm.TU.Sc2ySwM_362.1916 Anthoceros agrestis HOM05D003927 ORTHO05D004905 4.8e-09 67.4 119 30.3
CANSAT64G2986 Cannabis sativa HOM05D003927 ORTHO05D004905 5.3e-08 63.9 221 25.3
Gohir.A12G048400 Gossypium hirsutum HOM05D003927 ORTHO05D004905 9.0e-08 63.2 212 23.6
BcaC05g27140 Brassica carinata HOM05D003927 ORTHO05D004905 2.0e-07 62.0 99 29.3
A09p35130 Brassica napus HOM05D003927 ORTHO05D004905 2.0e-07 62.0 99 29.3
C05p30260 Brassica napus HOM05D003927 ORTHO05D004905 2.0e-07 62.0 99 29.3
BolC5t31766H Brassica oleracea HOM05D003927 ORTHO05D004905 2.0e-07 62.0 99 29.3
BraA09t39043Z Brassica rapa HOM05D003927 ORTHO05D004905 2.0e-07 62.0 99 29.3
Carub.0004s1671 Capsella rubella HOM05D003927 ORTHO05D004905 2.0e-07 62.0 102 29.4
THA.LOC104814353 Tarenaya hassleriana HOM05D003927 ORTHO05D004905 2.0e-07 62.0 102 30.4
CDE01G0678 Ceratophyllum demersum HOM05D000154 ORTHO05D004905 2.6e-07 61.6 216 23.6
CDE12G0287 Ceratophyllum demersum HOM05D003927 ORTHO05D004905 2.6e-07 61.6 217 24.4
BcaB04g18183 Brassica carinata HOM05D003927 ORTHO05D004905 3.4e-07 61.2 99 29.3
BcaB07g32771 Brassica carinata HOM05D003927 ORTHO05D004905 3.4e-07 61.2 99 29.3
BcaC07g37780 Brassica carinata HOM05D003927 ORTHO05D004905 3.4e-07 61.2 99 29.3
A08p10790 Brassica napus HOM05D003927 ORTHO05D004905 3.4e-07 61.2 99 29.3
BraA08t33076Z Brassica rapa HOM05D003927 ORTHO05D004905 3.4e-07 61.2 99 29.3
CARHR030580 Cardamine hirsuta HOM05D003927 ORTHO05D004905 3.4e-07 61.2 99 29.3
CAN.G149.2 Capsicum annuum HOM05D003927 ORTHO05D004905 4.5e-07 60.8 99 29.3
SGA_v2.0_scaffold175G39352 Striga asiatica HOM05D003927 ORTHO05D004905 4.5e-07 60.8 215 22.8
AT2G35020 Arabidopsis thaliana HOM05D003927 ORTHO05D004905 5.8e-07 60.5 102 28.4
Thhalv10007394m.g Eutrema salsugineum HOM05D003927 ORTHO05D004905 5.8e-07 60.5 99 29.3
SGA_v2.0_scaffold298G47698 Striga asiatica HOM05D003927 ORTHO05D004905 5.8e-07 60.5 215 21.9
Aa31LG2G15040 Aethionema arabicum HOM05D003927 ORTHO05D004905 7.6e-07 60.1 99 30.3
Thhalv10016553m.g Eutrema salsugineum HOM05D003927 ORTHO05D004905 7.6e-07 60.1 102 28.4
Sp4g17300 Schrenkiella parvula HOM05D003927 ORTHO05D004905 7.6e-07 60.1 102 28.4
THA.LOC104798559 Tarenaya hassleriana HOM05D003927 ORTHO05D004905 7.6e-07 60.1 209 22.5
BolC8t48168H Brassica oleracea HOM05D003927 ORTHO05D004905 9.9e-07 59.7 99 28.3
CARHR129180 Cardamine hirsuta HOM05D003927 ORTHO05D004905 9.9e-07 59.7 102 28.4
Duzib248G0257 Durio zibethinus HOM05D003927 ORTHO05D004905 9.9e-07 59.7 212 23.6
Sp1g26910 Schrenkiella parvula HOM05D003927 ORTHO05D004905 9.9e-07 59.7 99 29.3
Gohir.D12G047200 Gossypium hirsutum HOM05D003927 ORTHO05D004905 1.3e-06 59.3 212 22.6
Gorai.008G049800 Gossypium raimondii HOM05D003927 ORTHO05D004905 1.3e-06 59.3 212 22.6
unitig_748.g7494 Utricularia gibba HOM05D003927 ORTHO05D004905 1.3e-06 59.3 296 22.6
Cc00_g22880 Coffea canephora HOM05D003927 ORTHO05D004905 1.7e-06 58.9 216 23.1
AL1G45460 Arabidopsis lyrata HOM05D003927 ORTHO05D004905 2.2e-06 58.5 99 28.3
AT1G31070 Arabidopsis thaliana HOM05D003927 ORTHO05D004905 2.2e-06 58.5 99 28.3
RcHm_v2.0_Chr5g0020631 Rosa chinensis HOM05D003927 ORTHO05D004905 2.2e-06 58.5 216 24.1
Sc24g0002980 Simmondsia chinensis HOM05D003927 ORTHO05D004905 2.2e-06 58.5 215 21.9
MSTRG.7601 Avicennia marina HOM05D003927 ORTHO05D004905 2.9e-06 58.2 215 22.3
Carub.0001s2946 Capsella rubella HOM05D003927 ORTHO05D004905 2.9e-06 58.2 99 27.3
Nn7g38278 Nelumbo nucifera HOM05D003927 ORTHO05D004905 2.9e-06 58.2 213 23.0
Hund12931 Selenicereus undatus HOM05D003927 ORTHO05D004905 2.9e-06 58.2 125 25.6
Thecc.02G005900 Theobroma cacao HOM05D003927 ORTHO05D004905 2.9e-06 58.2 257 23.0
AL4G31040 Arabidopsis lyrata HOM05D003927 ORTHO05D004905 3.8e-06 57.8 102 27.5
arahy.Tifrunner.gnm1.ann1.YAS9I4 Arachis hypogaea HOM05D003927 ORTHO05D004905 3.8e-06 57.8 216 24.1
Oeu058944.1 Olea europaea HOM05D003927 ORTHO05D004905 3.8e-06 57.8 102 28.4
BcaB02g09488 Brassica carinata HOM05D003927 ORTHO05D004905 4.9e-06 57.4 102 26.5
C04p13780 Brassica napus HOM05D003927 ORTHO05D004905 4.9e-06 57.4 102 26.5
SalBow8G3138 Salvia bowleyana HOM05D003927 ORTHO05D004905 4.9e-06 57.4 216 22.2
A05p10690 Brassica napus HOM05D003927 ORTHO05D004905 6.4e-06 57.0 102 26.5
BraA05t20009Z Brassica rapa HOM05D003927 ORTHO05D004905 6.4e-06 57.0 102 26.5
Nitab4.5_0000443g0090 Nicotiana tabacum HOM05D003927 ORTHO05D004905 6.4e-06 57.0 99 28.3
Nitab4.5_0006246g0020 Nicotiana tabacum HOM05D003927 ORTHO05D004905 6.4e-06 57.0 99 28.3
Solyc02g068530.4 Solanum lycopersicum HOM05D003927 ORTHO05D004905 8.4e-06 56.6 99 27.3
Sopen02g017670 Solanum pennellii HOM05D003927 ORTHO05D004905 8.4e-06 56.6 99 27.3
PGSC0003DMG400010448 Solanum tuberosum HOM05D003927 ORTHO05D004905 8.4e-06 56.6 99 27.3


User provided reference genes

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