Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.3G207300 Prunus persica HOM05D003327 ORTHO05D004535 3.3e-180 635.2 389 100.0
Prupe.2G325100 Prunus persica HOM05D003327 ORTHO05D004535 4.3e-95 352.4 469 61.0
Lj8P113T26 Lonicera japonica HOM05D003327 ORTHO05D004535 3.7e-54 216.5 200 55.5
GSVIVG01030385001 Vitis vinifera HOM05D003327 ORTHO05D004535 4.8e-54 216.1 433 50.3
Actinidia11048 Actinidia chinensis HOM05D003327 ORTHO05D004535 3.8e-51 206.5 223 66.4
arahy.Tifrunner.gnm1.ann1.2625MI Arachis hypogaea HOM05D003327 ORTHO05D004535 6.5e-51 205.7 193 62.7
arahy.Tifrunner.gnm1.ann1.HZLZ57 Arachis hypogaea HOM05D003327 ORTHO05D004535 6.5e-51 205.7 193 72.5
MD09G1251900 Malus domestica HOM05D003327 ORTHO05D004535 1.1e-50 204.9 126 73.8
Glyma.13G298300 Glycine max HOM05D003327 ORTHO05D004535 1.9e-50 204.1 193 53.9
MD17G1244100 Malus domestica HOM05D003327 ORTHO05D004535 3.2e-50 203.4 126 73.0
Cfa014585 Carpinus fangiana HOM05D003327 ORTHO05D004535 9.4e-50 201.8 126 73.0
Glyma.12G203300 Glycine max HOM05D003327 ORTHO05D004535 9.4e-50 201.8 193 72.0
Gorai.005G202800 Gossypium raimondii HOM05D003327 ORTHO05D004535 9.4e-50 201.8 126 72.2
Duzib132G0920 Durio zibethinus HOM05D003327 ORTHO05D004535 2.1e-49 200.7 126 72.2
Ca_26452_v3 Cicer arietinum L. HOM05D003327 ORTHO05D004535 2.7e-49 200.3 193 52.8
Gohir.D02G180900 Gossypium hirsutum HOM05D003327 ORTHO05D004535 2.7e-49 200.3 126 71.4
Actinidia09866 Actinidia chinensis HOM05D003327 ORTHO05D004535 3.6e-49 199.9 127 71.7
Haze_05514 Corylus avellana HOM05D003327 ORTHO05D004535 3.6e-49 199.9 126 72.2
CiPaw.06G027000 Carya illinoinensis HOM05D003327 ORTHO05D004535 4.7e-49 199.5 126 71.4
VMungo1080G1483 Vigna mungo HOM05D003327 ORTHO05D004535 4.7e-49 199.5 196 70.9
FvH4_2g13420 Fragaria vesca HOM05D003327 ORTHO05D004535 6.1e-49 199.1 126 73.0
FAN27G1055 Fragaria x ananassa HOM05D003327 ORTHO05D004535 6.1e-49 199.1 126 73.0
RcHm_v2.0_Chr5g0050851 Rosa chinensis HOM05D003327 ORTHO05D004535 6.1e-49 199.1 126 73.0
ClCG06G002520 Citrullus lanatus HOM05D003327 ORTHO05D004535 8.0e-49 198.7 122 73.8
Haze_05508 Corylus avellana HOM05D003327 ORTHO05D004535 8.0e-49 198.7 126 71.4
Thecc.02G177000 Theobroma cacao HOM05D003327 ORTHO05D004535 8.0e-49 198.7 126 70.6
FAN24G1643 Fragaria x ananassa HOM05D003327 ORTHO05D004535 1.4e-48 198.0 126 72.2
Haze_13137 Corylus avellana HOM05D003327 ORTHO05D004535 1.8e-48 197.6 130 70.0
FAN15G1216 Fragaria x ananassa HOM05D003327 ORTHO05D004535 2.3e-48 197.2 126 72.2
Dinv23663 Davidia involucrata HOM05D003327 ORTHO05D004535 3.0e-48 196.8 126 71.4
Gohir.A03G157700 Gossypium hirsutum HOM05D003327 ORTHO05D004535 3.0e-48 196.8 126 70.6
Manes.13G148100 Manihot esculenta HOM05D003327 ORTHO05D004535 3.0e-48 196.8 128 69.5
Medtr7g068630 Medicago truncatula HOM05D003327 ORTHO05D004535 3.0e-48 196.8 193 53.4
QL08p038229 Quercus lobata HOM05D003327 ORTHO05D004535 4.0e-48 196.4 126 69.8
Sed0023241 Sechium edule HOM05D003327 ORTHO05D004535 5.2e-48 196.1 126 69.8
Lj1g0006616 Lotus japonicus HOM05D003327 ORTHO05D004535 8.8e-48 195.3 225 47.1
Phvul.005G104900 Phaseolus vulgaris HOM05D003327 ORTHO05D004535 1.2e-47 194.9 193 72.5
Prupe.3G157000 Prunus persica HOM05D003327 ORTHO05D004535 2.0e-47 194.1 126 70.6
Lj3g0008565 Lotus japonicus HOM05D003327 ORTHO05D004535 2.6e-47 193.7 124 69.4
MELO3C022275.2 Cucumis melo HOM05D003327 ORTHO05D004535 4.4e-47 193.0 124 69.4
CsaV3_6G008590 Cucumis sativus L. HOM05D003327 ORTHO05D004535 4.4e-47 193.0 130 66.9
DCAR_021237 Daucus carota HOM05D003327 ORTHO05D004535 4.4e-47 193.0 120 73.3
Lalb_Chr22g0356511 Lupinus albus HOM05D003327 ORTHO05D004535 4.4e-47 193.0 193 72.0
TPR.G8402 Trifolium pratense HOM05D003327 ORTHO05D004535 7.5e-47 192.2 193 68.9
Ciclev10018370m.g Citrus clementina HOM05D003327 ORTHO05D004535 9.8e-47 191.8 130 65.4
TAR629G1444 Trochodendron aralioides HOM05D003327 ORTHO05D004535 9.8e-47 191.8 127 67.7
CDE05G2562 Ceratophyllum demersum HOM05D003327 ORTHO05D004535 2.2e-46 190.7 124 68.5
CDE05G1413 Ceratophyllum demersum HOM05D003327 ORTHO05D004535 2.8e-46 190.3 124 68.5
CSS0024624 Camellia sinensis var. sinensis HOM05D003327 ORTHO05D004535 3.7e-46 189.9 126 70.6
Cpa.g.sc34.134 Carica papaya HOM05D003327 ORTHO05D004535 3.7e-46 189.9 126 67.5
COL.COLO4_09076 Corchorus olitorius HOM05D003327 ORTHO05D004535 3.7e-46 189.9 131 65.6
TWI36G1653 Tripterygium wilfordii HOM05D003327 ORTHO05D004535 8.3e-46 188.7 126 66.7
Rhsim11G0018300 Rhododendron simsii HOM05D003327 ORTHO05D004535 1.1e-45 188.3 250 42.0
RcHm_v2.0_Chr6g0275031 Rosa chinensis HOM05D003327 ORTHO05D004535 1.4e-45 188.0 126 68.3
Psat3g129480 Pisum sativum HOM05D003327 ORTHO05D004535 1.8e-45 187.6 193 71.0
QL05p081739 Quercus lobata HOM05D003327 ORTHO05D004535 3.1e-45 186.8 116 71.6
vmacro12281 Vaccinium macrocarpon HOM05D003327 ORTHO05D004535 4.1e-45 186.4 129 63.6
Rhsim06G0147000 Rhododendron simsii HOM05D003327 ORTHO05D004535 5.4e-45 186.0 126 64.3
Sc21g0000860 Simmondsia chinensis HOM05D003327 ORTHO05D004535 1.2e-44 184.9 129 62.0
Atru.chr9.1814 Acer truncatum HOM05D003327 ORTHO05D004535 3.5e-44 183.3 125 67.2
Atru.chr6.3011 Acer truncatum HOM05D003327 ORTHO05D004535 5.9e-44 182.6 126 66.7
Sabra13G0114600 Salix brachista HOM05D003327 ORTHO05D004535 5.9e-44 182.6 127 66.1
HanXRQChr14g0433631 Helianthus annuus HOM05D003327 ORTHO05D004535 7.7e-44 182.2 126 62.7
COL.COLO4_06982 Corchorus olitorius HOM05D003327 ORTHO05D004535 1.0e-43 181.8 134 64.2
EL10Ac7g16358 Beta vulgaris HOM05D003327 ORTHO05D004535 1.7e-43 181.0 102 77.5
HanXRQChr11g0343151 Helianthus annuus HOM05D003327 ORTHO05D004535 1.7e-43 181.0 126 61.9
Potri.013G135300 Populus trichocarpa HOM05D003327 ORTHO05D004535 2.2e-43 180.6 127 65.4
Rhsim05G0041700 Rhododendron simsii HOM05D003327 ORTHO05D004535 2.2e-43 180.6 130 60.8
HPP92_022219 Vanilla planifolia HOM05D003327 ORTHO05D004535 2.9e-43 180.3 124 65.3
Cc07_g08310 Coffea canephora HOM05D003327 ORTHO05D004535 5.0e-43 179.5 126 63.5
Solyc07g054200.4 Solanum lycopersicum HOM05D003327 ORTHO05D004535 6.5e-43 179.1 126 64.3
Nitab4.5_0003263g0030 Nicotiana tabacum HOM05D003327 ORTHO05D004535 8.5e-43 178.7 123 65.9
Aa31LG1G22990 Aethionema arabicum HOM05D003327 ORTHO05D004535 1.1e-42 178.3 124 64.5
CAN.G248.36 Capsicum annuum HOM05D003327 ORTHO05D004535 1.1e-42 178.3 123 65.0
Rhsim05G0039200 Rhododendron simsii HOM05D003327 ORTHO05D004535 1.1e-42 178.3 132 59.1
Sopen07g028130 Solanum pennellii HOM05D003327 ORTHO05D004535 1.1e-42 178.3 123 65.0
PGSC0003DMG400018313 Solanum tuberosum HOM05D003327 ORTHO05D004535 1.1e-42 178.3 123 65.0
AUR62004130 Chenopodium quinoa HOM05D003327 ORTHO05D004535 1.5e-42 177.9 115 67.8
Eucgr.K00962 Eucalyptus grandis HOM05D003327 ORTHO05D004535 1.5e-42 177.9 123 64.2
Peaxi162Scf00132g00526 Petunia axillaris HOM05D003327 ORTHO05D004535 1.9e-42 177.6 123 64.2
Nitab4.5_0000512g0190 Nicotiana tabacum HOM05D003327 ORTHO05D004535 3.2e-42 176.8 123 65.0
PSO478G4092 Papaver somniferum HOM05D003327 ORTHO05D004535 4.2e-42 176.4 127 59.8
AL6G49440 Arabidopsis lyrata HOM05D003327 ORTHO05D004535 5.5e-42 176.0 124 62.1
MBI19_g29442_MAGBIO Magnolia biondii HOM05D003327 ORTHO05D004535 7.2e-42 175.6 127 60.6
ECA248G1946 Erigeron canadensis HOM05D003327 ORTHO05D004535 9.4e-42 175.3 126 60.3
Os10g0498600 Oryza sativa ssp. japonica HOM05D003327 ORTHO05D004535 1.2e-41 174.9 127 61.4
PSO017G4615 Papaver somniferum HOM05D003327 ORTHO05D004535 1.6e-41 174.5 127 59.1
Prupe.8G033800 Prunus persica HOM05D003327 ORTHO05D004535 1.6e-41 174.5 120 69.2
THA.LOC104801181 Tarenaya hassleriana HOM05D003327 ORTHO05D004535 2.1e-41 174.1 117 64.1
CARHR251830 Cardamine hirsuta HOM05D003327 ORTHO05D004535 2.7e-41 173.7 122 63.9
Nitab4.5_0002526g0040 Nicotiana tabacum HOM05D003327 ORTHO05D004535 2.7e-41 173.7 123 63.4
unitig_62.g23173 Utricularia gibba HOM05D003327 ORTHO05D004535 2.7e-41 173.7 126 59.5
Thhalv10028386m.g Eutrema salsugineum HOM05D003327 ORTHO05D004535 3.6e-41 173.3 124 61.3
MSTRG.14206 Avicennia marina HOM05D003327 ORTHO05D004535 6.1e-41 172.6 128 57.8
A09p02770 Brassica napus HOM05D003327 ORTHO05D004535 6.1e-41 172.6 115 67.0
BraA09t35919Z Brassica rapa HOM05D003327 ORTHO05D004535 6.1e-41 172.6 115 67.0
Medtr1g011710 Medicago truncatula HOM05D003327 ORTHO05D004535 1.0e-40 171.8 118 66.1
BcaC04g23971 Brassica carinata HOM05D003327 ORTHO05D004535 1.4e-40 171.4 115 66.1
C09p02840 Brassica napus HOM05D003327 ORTHO05D004535 1.4e-40 171.4 115 66.1
BolC9t53210H Brassica oleracea HOM05D003327 ORTHO05D004535 1.4e-40 171.4 115 66.1
Migut.H01067 Erythranthe guttata HOM05D003327 ORTHO05D004535 2.3e-40 170.6 121 61.2
Sp6g03490 Schrenkiella parvula HOM05D003327 ORTHO05D004535 4.0e-40 169.9 122 62.3
BcaB01g01947 Brassica carinata HOM05D003327 ORTHO05D004535 5.2e-40 169.5 122 62.3
TPR.G38990 Trifolium pratense HOM05D003327 ORTHO05D004535 5.2e-40 169.5 186 47.8
Carub.0008s0242 Capsella rubella HOM05D003327 ORTHO05D004535 6.8e-40 169.1 124 59.7
PGR142G2878 Punica granatum HOM05D003327 ORTHO05D004535 6.8e-40 169.1 110 66.4
SHI18144 Sapria himalayana HOM05D003327 ORTHO05D004535 6.8e-40 169.1 129 58.1
AT4G03430 Arabidopsis thaliana HOM05D003327 ORTHO05D004535 8.8e-40 168.7 122 60.7
Ciclev10018758m.g Citrus clementina HOM05D003327 ORTHO05D004535 1.2e-39 168.3 187 48.1
Zm00001eb410870 Zea mays HOM05D003327 ORTHO05D004535 2.0e-39 167.5 124 61.3
AagrBONN_evm.TU.Sc2ySwM_117.1992 Anthoceros agrestis HOM05D003327 ORTHO05D004535 2.6e-39 167.2 128 57.0
AUR62009842 Chenopodium quinoa HOM05D003327 ORTHO05D004535 3.4e-39 166.8 120 64.2
Mapoly0016s0118 Marchantia polymorpha HOM05D003327 ORTHO05D004535 3.4e-39 166.8 122 60.7
Zm00001eb137760 Zea mays HOM05D003327 ORTHO05D004535 3.4e-39 166.8 127 59.1
Thecc.05G055100 Theobroma cacao HOM05D003327 ORTHO05D004535 9.8e-39 165.2 101 72.3
Lsat_1_v5_gn_1_74900 Lactuca sativa HOM05D003327 ORTHO05D004535 2.2e-38 164.1 126 56.3
Carub.0006s3363 Capsella rubella HOM05D003327 ORTHO05D004535 2.8e-38 163.7 124 58.1
TPR.G36382 Trifolium pratense HOM05D003327 ORTHO05D004535 8.3e-38 162.2 116 63.8
BcaC01g06678 Brassica carinata HOM05D003327 ORTHO05D004535 2.4e-37 160.6 120 61.7
BraA03t12222Z Brassica rapa HOM05D003327 ORTHO05D004535 1.6e-36 157.9 120 60.8
SMO364G0651 Selaginella moellendorffii HOM05D003327 ORTHO05D004535 7.7e-36 155.6 514 34.4
C03p36760 Brassica napus HOM05D003327 ORTHO05D004535 2.9e-35 153.7 120 60.8
A03p30430 Brassica napus HOM05D003327 ORTHO05D004535 3.8e-35 153.3 115 60.9
RcHm_v2.0_Chr7g0226921 Rosa chinensis HOM05D003327 ORTHO05D004535 6.6e-35 152.5 130 58.5
Nn2g15288 Nelumbo nucifera HOM05D003327 ORTHO05D004535 8.6e-35 152.1 103 65.0
Pp3c8_17590 Physcomitrium patens HOM05D003327 ORTHO05D004535 1.5e-34 151.4 123 55.3
CBR_g16993 Chara braunii HOM05D003327 ORTHO05D004535 3.3e-34 150.2 122 54.1
Pp3c24_11640 Physcomitrium patens HOM05D003327 ORTHO05D004535 1.6e-33 147.9 123 53.7
SGA_v2.0_scaffold8G04345 Striga asiatica HOM05D003327 ORTHO05D004535 4.7e-33 146.4 112 57.1
AL7G10490 Arabidopsis lyrata HOM05D003327 ORTHO05D004535 1.4e-32 144.8 118 56.8
ATR0751G069 Amborella trichopoda HOM05D003327 ORTHO05D004535 6.8e-32 142.5 110 55.5
SMO112G0037 Selaginella moellendorffii HOM05D003327 ORTHO05D004535 8.9e-32 142.1 122 51.6
A08p17560 Brassica napus HOM05D003327 ORTHO05D004535 1.2e-31 141.7 191 41.4
PRCOL_00002302 Prasinoderma coloniale HOM05D003327 ORTHO05D004535 1.5e-31 141.4 219 48.4
BcaC01g00984 Brassica carinata HOM05D003327 ORTHO05D004535 4.4e-31 139.8 192 40.6
BraA08t33710Z Brassica rapa HOM05D003327 ORTHO05D004535 7.5e-31 139.0 191 40.8
Aqoxy2G01527 Aquilegia oxysepala HOM05D003327 ORTHO05D004535 9.8e-31 138.7 128 51.6
BcaC01g06673 Brassica carinata HOM05D003327 ORTHO05D004535 3.7e-30 136.7 100 62.0
C03p36710 Brassica napus HOM05D003327 ORTHO05D004535 3.7e-30 136.7 100 62.0
BolC3t15985H Brassica oleracea HOM05D003327 ORTHO05D004535 3.7e-30 136.7 100 62.0
Cre14.g633650 Chlamydomonas reinhardtii HOM05D003327 ORTHO05D004535 8.3e-30 135.6 104 56.7
FvH4_5g31520 Fragaria vesca HOM05D003327 ORTHO05D004535 1.4e-29 134.8 120 55.0
C03p86560 Brassica napus HOM05D003327 ORTHO05D004535 4.1e-29 133.3 127 50.4
BolC3t20950H Brassica oleracea HOM05D003327 ORTHO05D004535 4.1e-29 133.3 127 50.4
HanXRQChr15g0484291 Helianthus annuus HOM05D003327 ORTHO05D004535 7.0e-29 132.5 126 50.0
MCO12G329 Micromonas commoda HOM05D003327 ORTHO05D004535 2.7e-28 130.6 131 45.8
SMO337G0045 Selaginella moellendorffii HOM05D003327 ORTHO05D004535 5.0e-27 126.3 123 44.7
Cfa025098 Carpinus fangiana HOM05D003327 ORTHO05D004535 2.4e-21 107.5 214 43.5
BcaB01g02538 Brassica carinata HOM05D003327 ORTHO05D004535 7.8e-20 102.4 70 67.1
ClCG05G006860 Citrullus lanatus HOM05D000023 ORTHO05D000014 4.3e-18 96.7 103 49.5
Ah.08g216420 Amaranthus hybridus HOM05D003327 ORTHO05D004535 1.9e-13 81.3 63 65.1
Os01g0263600 Oryza sativa ssp. japonica HOM05D003327 ORTHO05D004535 2.4e-13 80.9 63 63.5
AUR62038154 Chenopodium quinoa HOM05D003327 ORTHO05D004535 5.4e-13 79.7 63 63.5
RcHm_v2.0_Chr6g0275041 Rosa chinensis HOM05D003327 ORTHO05D004535 5.4e-13 79.7 63 65.1
BolC3t15990H Brassica oleracea HOM05D003327 ORTHO05D004535 9.2e-13 79.0 120 39.2
Rhsim05G0038800 Rhododendron simsii HOM05D003327 ORTHO05D004535 9.2e-13 79.0 62 59.7
CsaV3_3G015510 Cucumis sativus L. HOM05D003327 ORTHO05D004535 1.1e-10 72.0 93 43.0
EL10Ac9g22810 Beta vulgaris HOM05D003327 ORTHO05D004535 4.3e-10 70.1 69 50.7
HanXRQChr01g0023131 Helianthus annuus HOM05D003327 ORTHO05D004535 5.6e-10 69.7 62 58.1
HanXRQChr01g0023151 Helianthus annuus HOM05D003327 ORTHO05D004535 8.1e-09 65.9 56 57.1
RcHm_v2.0_Chr3g0494641 Rosa chinensis HOM05D003327 ORTHO05D024129 1.5e-07 61.6 174 30.5
HanXRQChr13g0424851 Helianthus annuus HOM05D003327 ORTHO05D004535 1.7e-06 58.2 75 46.7
HanXRQChr13g0424841 Helianthus annuus HOM05D003327 ORTHO05D004535 3.7e-06 57.0 64 51.6
HanXRQChr04g0102071 Helianthus annuus HOM05D003327 ORTHO05D004535 4.9e-06 56.6 74 45.9
HanXRQChr13g0424861 Helianthus annuus HOM05D003327 ORTHO05D004535 4.9e-06 56.6 74 45.9
HanXRQChr00c0158g0572131 Helianthus annuus HOM05D003327 ORTHO05D004535 6.4e-06 56.2 75 46.7


User provided reference genes

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