Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.1G000700 Prunus persica HOM05D006136 ORTHO05D007244 0.0e+00 1222.2 639 100.0
MD04G1000700 Malus domestica HOM05D006136 ORTHO05D007244 9.0e-183 644.4 734 55.0
RcHm_v2.0_Chr4g0384741 Rosa chinensis HOM05D006136 ORTHO05D007244 6.7e-154 548.5 692 51.6
FAN17G2087 Fragaria x ananassa HOM05D006136 ORTHO05D007244 7.7e-150 535.0 681 51.1
FAN12G0507 Fragaria x ananassa HOM05D006136 ORTHO05D007244 3.4e-137 493.0 696 47.4
Cfa012873 Carpinus fangiana HOM05D006136 ORTHO05D007244 2.7e-126 456.8 658 47.6
FAN22G1396 Fragaria x ananassa HOM05D006136 ORTHO05D007244 3.3e-124 449.9 603 49.8
RcHm_v2.0_Chr5g0003141 Rosa chinensis HOM05D006136 ORTHO05D007244 2.6e-121 440.3 605 48.4
QL11p005727 Quercus lobata HOM05D006136 ORTHO05D007244 8.9e-114 415.2 780 39.2
CiPaw.07G237600 Carya illinoinensis HOM05D006136 ORTHO05D007244 1.9e-111 407.5 658 44.8
QL05p072260 Quercus lobata HOM05D000321 ORTHO05D007244 5.4e-111 406.0 636 44.0
FAN12G3399 Fragaria x ananassa HOM05D006136 ORTHO05D007244 2.1e-110 404.1 496 52.6
GSVIVG01038350001 Vitis vinifera HOM05D006136 ORTHO05D007244 1.0e-109 401.7 640 43.0
Dinv12632 Davidia involucrata HOM05D006136 ORTHO05D002774 8.1e-107 392.1 644 43.3
CSS0003139 Camellia sinensis var. sinensis HOM05D006136 ORTHO05D007244 2.1e-99 367.5 639 40.2
Manes.11G052190 Manihot esculenta HOM05D006136 ORTHO05D007244 1.7e-96 357.8 633 39.2
Haze_21244 Corylus avellana HOM05D006136 ORTHO05D007244 8.4e-96 355.5 581 44.1
Glyma.15G193100 Glycine max HOM05D006136 ORTHO05D007244 1.9e-95 354.4 645 40.5
Manes.02G224001 Manihot esculenta HOM05D006136 ORTHO05D007244 1.9e-95 354.4 633 38.7
Glyma.09G084800 Glycine max HOM05D006136 ORTHO05D007244 4.2e-95 353.2 642 41.0
Thecc.09G202200 Theobroma cacao HOM05D006136 ORTHO05D007244 1.2e-94 351.7 721 38.4
TAR626G0660 Trochodendron aralioides HOM05D006136 ORTHO05D007244 1.2e-94 351.7 649 38.7
TWI32G0914 Tripterygium wilfordii HOM05D006136 ORTHO05D007244 2.1e-94 350.9 680 37.9
arahy.Tifrunner.gnm1.ann1.46MDAV Arachis hypogaea HOM05D006136 ORTHO05D007244 1.6e-91 341.3 634 39.4
Lalb_Chr08g0233201 Lupinus albus HOM05D006136 ORTHO05D007244 3.6e-91 340.1 681 40.4
Cpa.g.sc46.113 Carica papaya HOM05D006136 ORTHO05D007244 2.4e-90 337.4 770 34.5
Lj9A583T57 Lonicera japonica HOM05D006136 ORTHO05D007244 9.0e-90 335.5 708 38.7
Phvul.009G217200 Phaseolus vulgaris HOM05D006136 ORTHO05D007244 3.4e-89 333.6 633 40.1
Lj6g0010551 Lotus japonicus HOM05D006136 ORTHO05D007244 5.8e-89 332.8 680 39.3
Gohir.D08G026500 Gossypium hirsutum HOM05D006136 ORTHO05D007244 1.2e-86 325.1 712 35.1
COL.COLO4_09001 Corchorus olitorius HOM05D006136 ORTHO05D007244 3.5e-86 323.6 738 34.7
Gorai.004G023000 Gossypium raimondii HOM05D006136 ORTHO05D007244 6.0e-86 322.8 714 34.7
Ciclev10007497m.g Citrus clementina HOM05D006136 ORTHO05D007244 1.3e-85 321.6 806 35.5
Gohir.A08G016500 Gossypium hirsutum HOM05D006136 ORTHO05D007244 1.8e-85 321.2 715 35.4
Duzib170G0744 Durio zibethinus HOM05D006136 ORTHO05D007244 2.3e-85 320.9 725 34.5
VMungo1309G0146 Vigna mungo HOM05D006136 ORTHO05D007244 7.4e-84 315.8 638 37.6
Atru.chr7.1014 Acer truncatum HOM05D006136 ORTHO05D007244 9.6e-84 315.5 807 34.4
CANSAT01G2594 Cannabis sativa HOM05D006136 ORTHO05D007244 1.3e-83 315.1 689 37.3
Oeu000955.1 Olea europaea HOM05D006136 ORTHO05D007244 1.1e-82 312.0 633 36.5
Potri.018G151300 Populus trichocarpa HOM05D006136 ORTHO05D007244 1.1e-82 312.0 645 37.2
Eucgr.C02149 Eucalyptus grandis HOM05D006136 ORTHO05D007244 2.6e-81 307.4 698 35.8
ECA234G2139 Erigeron canadensis HOM05D006136 ORTHO05D007244 5.8e-81 306.2 696 35.5
MELO3C010014.2 Cucumis melo HOM05D006136 ORTHO05D007244 2.9e-80 303.9 656 34.9
Psat1g019160 Pisum sativum HOM05D006136 ORTHO05D007244 1.4e-79 301.6 701 37.5
FvH4_4g00130 Fragaria vesca HOM05D006136 ORTHO05D007244 1.9e-79 301.2 490 44.9
Sabra18G0127000 Salix brachista HOM05D006136 ORTHO05D007244 4.2e-79 300.1 646 37.8
ClCG03G011600 Citrullus lanatus HOM05D006136 ORTHO05D007244 1.6e-78 298.1 678 35.5
Medtr2g048340 Medicago truncatula HOM05D006136 ORTHO05D007244 4.6e-78 296.6 675 36.1
Aqoxy7G02564 Aquilegia oxysepala HOM05D006136 ORTHO05D007244 1.8e-77 294.7 808 31.9
DCAR_020445 Daucus carota HOM05D006136 ORTHO05D002774 1.8e-77 294.7 706 34.3
vmacro17832 Vaccinium macrocarpon HOM05D006136 ORTHO05D007244 1.8e-77 294.7 689 36.4
SalBow5G5580 Salvia bowleyana HOM05D006136 ORTHO05D007244 3.9e-77 293.5 669 34.5
Thhalv10012942m.g Eutrema salsugineum HOM05D006136 ORTHO05D007244 1.5e-76 291.6 680 35.9
Peaxi162Scf00474g00018 Petunia axillaris HOM05D006136 ORTHO05D007244 1.9e-76 291.2 701 34.1
MSTRG.26507 Avicennia marina HOM05D006136 ORTHO05D007244 3.3e-76 290.4 659 34.1
Lsat_1_v5_gn_5_82020 Lactuca sativa HOM05D006136 ORTHO05D007244 4.3e-76 290.0 615 36.3
CsaV3_1G044190 Cucumis sativus L. HOM05D006136 ORTHO05D007244 3.7e-75 287.0 663 32.9
Rhsim08G0117200 Rhododendron simsii HOM05D006136 ORTHO05D007244 1.4e-74 285.0 723 34.3
MBI16_g40727_MAGBIO Magnolia biondii HOM05D006136 ORTHO05D007244 5.3e-74 283.1 649 35.3
CSS0019621 Camellia sinensis var. sinensis HOM05D006136 ORTHO05D007244 1.2e-73 282.0 436 42.4
CARHR271930 Cardamine hirsuta HOM05D006136 ORTHO05D007244 2.0e-73 281.2 756 31.6
PGR044G0474 Punica granatum HOM05D006136 ORTHO05D007244 2.6e-73 280.8 669 37.1
Cc06_g23510 Coffea canephora HOM05D006136 ORTHO05D007244 2.9e-72 277.3 651 36.4
HanXRQChr10g0309281 Helianthus annuus HOM05D006136 ORTHO05D007244 1.1e-71 275.4 672 34.5
EL10Ac2g03821 Beta vulgaris HOM05D006136 ORTHO05D007244 1.6e-70 271.6 676 33.3
Sp6g19810 Schrenkiella parvula HOM05D006136 ORTHO05D007244 1.6e-70 271.6 691 34.0
AL8G34230 Arabidopsis lyrata HOM05D006136 ORTHO05D007244 2.1e-70 271.2 761 31.5
Sc06g0001020 Simmondsia chinensis HOM05D006136 ORTHO05D007244 3.5e-70 270.4 722 33.0
PGSC0003DMG400013541 Solanum tuberosum HOM05D006136 ORTHO05D007244 6.0e-70 269.6 721 33.3
PSO478G4925 Papaver somniferum HOM05D006136 ORTHO05D007244 1.1e-68 265.4 745 32.3
Ca_02520_v3 Cicer arietinum L. HOM05D006136 ORTHO05D007244 1.5e-68 265.0 612 34.5
Nitab4.5_0000807g0150 Nicotiana tabacum HOM05D006136 ORTHO05D007244 4.3e-68 263.5 757 32.0
Migut.L01610 Erythranthe guttata HOM05D006136 ORTHO05D007244 1.6e-67 261.5 694 33.3
AUR62009114 Chenopodium quinoa HOM05D000163 ORTHO05D007244 1.1e-66 258.8 720 31.8
BcaC04g19905 Brassica carinata HOM05D006136 ORTHO05D007244 2.4e-66 257.7 726 31.8
A10p16060 Brassica napus HOM05D006136 ORTHO05D007244 1.2e-65 255.4 397 43.1
C09p50030 Brassica napus HOM05D006136 ORTHO05D007244 1.5e-65 255.0 727 31.4
BolC9t57856H Brassica oleracea HOM05D006136 ORTHO05D007244 2.6e-65 254.2 734 31.3
BraA10t43623Z Brassica rapa HOM05D006136 ORTHO05D007244 3.4e-65 253.8 390 43.6
PSO782G1690 Papaver somniferum HOM05D006136 ORTHO05D007244 5.9e-65 253.1 743 30.1
AT5G58130 Arabidopsis thaliana HOM05D006136 ORTHO05D007244 1.0e-64 252.3 793 30.3
AUR62039148 Chenopodium quinoa HOM05D006136 ORTHO05D007244 3.8e-64 250.4 721 31.8
THA.LOC104803376 Tarenaya hassleriana HOM05D006136 ORTHO05D007244 1.4e-63 248.4 711 32.5
Aa31LG3G13960 Aethionema arabicum HOM05D006136 ORTHO05D007244 2.5e-63 247.7 423 41.6
Sopen07g022390 Solanum pennellii HOM05D006136 ORTHO05D007244 3.2e-63 247.3 799 30.4
Carub.0008s1868 Capsella rubella HOM05D006136 ORTHO05D007244 3.0e-61 240.7 792 30.1
Nn5g26953 Nelumbo nucifera HOM05D006136 ORTHO05D007244 3.9e-61 240.4 429 40.6
BcaB08g36165 Brassica carinata HOM05D006136 ORTHO05D007244 8.8e-61 239.2 746 30.3
HPP92_017041 Vanilla planifolia HOM05D006136 ORTHO05D007244 3.3e-60 237.3 418 40.2
Zm00001eb209220 Zea mays HOM05D006136 ORTHO05D007244 2.2e-59 234.6 614 30.6
Nitab4.5_0000170g0140 Nicotiana tabacum HOM05D006136 ORTHO05D007244 6.3e-59 233.0 763 29.8
Actinidia33603 Actinidia chinensis HOM05D006136 ORTHO05D007244 2.0e-57 228.0 306 46.7
ATR0626G098 Amborella trichopoda HOM05D006136 ORTHO05D007244 2.2e-56 224.6 624 31.1
TPR.G18712 Trifolium pratense HOM05D006136 ORTHO05D007244 1.9e-55 221.5 620 35.3
Os02g0138200 Oryza sativa ssp. japonica HOM05D006136 ORTHO05D007244 4.7e-54 216.9 620 30.3
unitig_699.g19255 Utricularia gibba HOM05D006136 ORTHO05D007244 6.3e-51 206.5 301 43.9
SGA_v2.0_scaffold21G09584 Striga asiatica HOM05D006136 ORTHO05D007244 3.4e-49 200.7 663 30.0
SEGI_05126 Sequoiadendron giganteum HOM05D006136 ORTHO05D007244 8.8e-45 186.0 215 48.4
PGR044G0304 Punica granatum HOM05D006136 ORTHO05D007244 3.6e-38 164.1 652 29.9
GSVIVG01038333001 Vitis vinifera HOM05D006136 ORTHO05D007244 8.2e-35 152.9 155 50.3
CDE05G3219 Ceratophyllum demersum HOM05D006136 ORTHO05D007244 7.7e-33 146.4 325 34.5
arahy.Tifrunner.gnm1.ann1.27MYTD Arachis hypogaea HOM05D006136 ORTHO05D007244 6.5e-32 143.3 141 56.7
SMO367G1245 Selaginella moellendorffii HOM05D006136 ORTHO05D007244 7.2e-31 139.8 166 45.8
arahy.Tifrunner.gnm1.ann1.QC7K1D Arachis hypogaea HOM05D006136 ORTHO05D007244 6.1e-30 136.7 99 66.7
Solyc07g042740.3 Solanum lycopersicum HOM05D006136 ORTHO05D007244 6.1e-30 136.7 202 42.1
Lj1g0026291 Lotus japonicus HOM05D006136 ORTHO05D007244 4.0e-29 134.0 321 34.6
arahy.Tifrunner.gnm1.ann1.Q88MA9 Arachis hypogaea HOM05D006136 ORTHO05D007244 5.2e-29 133.7 99 63.6
Mapoly0169s0023 Marchantia polymorpha HOM05D006136 ORTHO05D007244 2.8e-27 127.9 198 40.9
Sed0020259 Sechium edule HOM05D006136 ORTHO05D007244 1.3e-24 119.0 466 27.0
AagrBONN_evm.TU.Sc2ySwM_228.2439 Anthoceros agrestis HOM05D006136 ORTHO05D007244 7.5e-20 103.2 193 36.3
Solyc07g042700.4 Solanum lycopersicum HOM05D006136 ORTHO05D007244 1.3e-19 102.4 161 43.5
Pp3c1_8430 Physcomitrium patens HOM05D006136 ORTHO05D007244 2.4e-18 98.2 103 49.5
arahy.Tifrunner.gnm1.ann1.SWI1TY Arachis hypogaea HOM05D006136 ORTHO05D007244 3.1e-18 97.8 293 31.4
Nitab4.5_0002310g0140 Nicotiana tabacum HOM05D006136 ORTHO05D007244 9.2e-18 96.3 167 41.3
Hund03317 Selenicereus undatus HOM05D006136 ORTHO05D007244 7.3e-15 86.7 524 26.9
Glyma.07G231200 Glycine max HOM05D003235 ORTHO05D007244 1.4e-13 82.4 75 52.0
VMungo1309G2339 Vigna mungo HOM05D006136 ORTHO05D007244 9.8e-12 76.3 151 33.8
Hma1.2p1_2895F.1_g329976 Hydrangea macrophylla HOM05D006136 ORTHO05D007244 2.9e-11 74.7 58 63.8
Lsat_1_v5_gn_5_81880 Lactuca sativa HOM05D006136 ORTHO05D007244 2.9e-11 74.7 149 34.2
BcaC03g14120 Brassica carinata HOM05D009052 ORTHO05D011796 3.2e-10 71.2 78 50.0
C02p13590 Brassica napus HOM05D006136 ORTHO05D007244 9.2e-10 69.7 78 50.0
BolC2t07471H Brassica oleracea HOM05D006136 ORTHO05D007244 9.2e-10 69.7 78 50.0
CBR_g39420 Chara braunii HOM05D006136 ORTHO05D007244 4.6e-09 67.4 63 49.2
TPR.G20669 Trifolium pratense HOM05D006136 ORTHO05D007244 4.6e-09 67.4 57 59.6
MBI16_g40728_MAGBIO Magnolia biondii HOM05D006136 ORTHO05D007244 3.6e-06 57.8 66 54.5


User provided reference genes

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