Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c9_10830 Physcomitrium patens HOM05D001366 ORTHO05D005449 7.3e-53 210.3 107 100.0
Pp3c15_13540 Physcomitrium patens HOM05D001366 ORTHO05D005449 6.8e-51 203.8 107 96.3
Mapoly0012s0108 Marchantia polymorpha HOM05D001366 ORTHO05D005449 8.6e-46 186.8 107 86.0
SMO169G0007 Selaginella moellendorffii HOM05D001366 ORTHO05D005449 1.7e-41 172.6 106 77.4
AagrBONN_evm.TU.Sc2ySwM_228.3950 Anthoceros agrestis HOM05D001366 ORTHO05D005449 2.1e-39 165.6 107 74.8
AagrBONN_evm.TU.Sc2ySwM_228.5579 Anthoceros agrestis HOM05D001366 ORTHO05D005449 2.3e-38 162.2 107 72.9
Atru.chr11.619 Acer truncatum HOM05D001366 ORTHO05D005449 9.0e-35 150.2 107 66.4
Atru.chr13.973 Acer truncatum HOM05D001366 ORTHO05D005449 9.0e-35 150.2 107 65.4
Cpa.g.sc21.43 Carica papaya HOM05D001366 ORTHO05D005449 9.0e-35 150.2 107 66.4
ClCG11G014700 Citrullus lanatus HOM05D001366 ORTHO05D005449 9.0e-35 150.2 107 64.5
MBI19_g32700_MAGBIO Magnolia biondii HOM05D001366 ORTHO05D005449 1.2e-34 149.8 107 65.4
Nn1g05642 Nelumbo nucifera HOM05D001366 ORTHO05D005449 1.5e-34 149.4 107 65.4
COL.COLO4_35286 Corchorus olitorius HOM05D001366 ORTHO05D005449 2.0e-34 149.1 107 64.5
FAN04G2369 Fragaria x ananassa HOM05D001366 ORTHO05D005449 2.0e-34 149.1 107 64.5
Glyma.14G183100 Glycine max HOM05D001366 ORTHO05D005449 2.0e-34 149.1 107 65.4
Prupe.1G536300 Prunus persica HOM05D001366 ORTHO05D005449 2.0e-34 149.1 107 65.4
RcHm_v2.0_Chr7g0233761 Rosa chinensis HOM05D001366 ORTHO05D005449 2.0e-34 149.1 107 65.4
FvH4_5g34180 Fragaria vesca HOM05D001366 ORTHO05D005449 2.6e-34 148.7 107 65.4
FAN18G2982 Fragaria x ananassa HOM05D001366 ORTHO05D005449 2.6e-34 148.7 107 65.4
LjContig00408g0006754 Lotus japonicus HOM05D001366 ORTHO05D005449 2.6e-34 148.7 107 65.4
CARHR231830 Cardamine hirsuta HOM05D001366 ORTHO05D005449 3.4e-34 148.3 107 64.5
Glyma.02G216100 Glycine max HOM05D001366 ORTHO05D005449 3.4e-34 148.3 107 65.4
Medtr7g005540 Medicago truncatula HOM05D001366 ORTHO05D005449 3.4e-34 148.3 107 64.5
Phvul.008G183300 Phaseolus vulgaris HOM05D001366 ORTHO05D005449 3.4e-34 148.3 107 65.4
Gohir.D05G220900 Gossypium hirsutum HOM05D001366 ORTHO05D005449 4.4e-34 147.9 107 64.5
Gorai.009G228000 Gossypium raimondii HOM05D001366 ORTHO05D005449 4.4e-34 147.9 107 64.5
Sed0015347 Sechium edule HOM05D001366 ORTHO05D005449 4.4e-34 147.9 107 62.6
ATR0691G175 Amborella trichopoda HOM05D001366 ORTHO05D005449 5.8e-34 147.5 107 64.5
AL7G28780 Arabidopsis lyrata HOM05D001366 ORTHO05D005449 5.8e-34 147.5 107 64.5
AT4G24440 Arabidopsis thaliana HOM05D001366 ORTHO05D005449 5.8e-34 147.5 107 64.5
MELO3C008106.2 Cucumis melo HOM05D001366 ORTHO05D005449 5.8e-34 147.5 107 62.6
CsaV3_2G033370 Cucumis sativus L. HOM05D001366 ORTHO05D005449 5.8e-34 147.5 107 63.6
Eucgr.F00436 Eucalyptus grandis HOM05D001366 ORTHO05D005449 5.8e-34 147.5 107 64.5
Thhalv10026637m.g Eutrema salsugineum HOM05D001366 ORTHO05D005449 5.8e-34 147.5 107 64.5
PSO700G0345 Papaver somniferum HOM05D001366 ORTHO05D005449 5.8e-34 147.5 107 64.5
Peaxi162Scf00160g00913 Petunia axillaris HOM05D001366 ORTHO05D005449 5.8e-34 147.5 107 64.5
Sp7g22400 Schrenkiella parvula HOM05D001366 ORTHO05D005449 5.8e-34 147.5 107 64.5
Cc10_g08370 Coffea canephora HOM05D001366 ORTHO05D005449 7.6e-34 147.1 107 64.5
CsaV3_2G033350 Cucumis sativus L. HOM05D001366 ORTHO05D005449 7.6e-34 147.1 107 63.6
Lalb_Chr23g0269931 Lupinus albus HOM05D001366 ORTHO05D005449 7.6e-34 147.1 107 65.4
Potri.005G151700 Populus trichocarpa HOM05D001366 ORTHO05D005449 7.6e-34 147.1 107 65.4
BcaC09g50868 Brassica carinata HOM05D001366 ORTHO05D003220 9.9e-34 146.7 106 64.2
A08p21460 Brassica napus HOM05D001366 ORTHO05D005449 9.9e-34 146.7 107 64.5
C01p19760 Brassica napus HOM05D001366 ORTHO05D003220 9.9e-34 146.7 106 64.2
BolC1t01904H Brassica oleracea HOM05D001366 ORTHO05D003220 9.9e-34 146.7 106 64.2
BolC8t48576H Brassica oleracea HOM05D001366 ORTHO05D005449 9.9e-34 146.7 107 64.5
BraA08t34095Z Brassica rapa HOM05D001366 ORTHO05D005449 9.9e-34 146.7 107 64.5
Ciclev10002917m.g Citrus clementina HOM05D001366 ORTHO05D005449 9.9e-34 146.7 107 64.5
Lalb_Chr11g0064851 Lupinus albus HOM05D001366 ORTHO05D005449 9.9e-34 146.7 107 65.4
arahy.Tifrunner.gnm1.ann1.8785AP Arachis hypogaea HOM05D001366 ORTHO05D005449 1.3e-33 146.4 107 65.4
arahy.Tifrunner.gnm1.ann1.CRNC3Y Arachis hypogaea HOM05D001366 ORTHO05D005449 1.3e-33 146.4 107 65.4
arahy.Tifrunner.gnm1.ann1.HU70H8 Arachis hypogaea HOM05D001366 ORTHO05D005449 1.3e-33 146.4 107 65.4
Medtr5g066740 Medicago truncatula HOM05D001366 ORTHO05D005449 1.3e-33 146.4 107 65.4
HPP92_010288 Vanilla planifolia HOM05D001366 ORTHO05D005449 1.3e-33 146.4 106 64.2
Aa31LG4G9540 Aethionema arabicum HOM05D001366 ORTHO05D005449 1.7e-33 146.0 107 63.6
A01p15810 Brassica napus HOM05D001366 ORTHO05D003220 1.7e-33 146.0 104 65.4
BraA01t01516Z Brassica rapa HOM05D001366 ORTHO05D003220 1.7e-33 146.0 104 65.4
CSS0031876 Camellia sinensis var. sinensis HOM05D001366 ORTHO05D005449 1.7e-33 146.0 107 63.6
Carub.0007s1663 Capsella rubella HOM05D001366 ORTHO05D005449 1.7e-33 146.0 107 63.6
Psat2g064960 Pisum sativum HOM05D001366 ORTHO05D005449 1.7e-33 146.0 107 64.5
Thecc.08G074000 Theobroma cacao HOM05D001366 ORTHO05D005449 1.7e-33 146.0 107 63.6
TPR.G15622 Trifolium pratense HOM05D001366 ORTHO05D005449 1.7e-33 146.0 105 65.7
EL10Ac8g20405 Beta vulgaris HOM05D001366 ORTHO05D005449 2.2e-33 145.6 107 63.6
EL10Ac9g20840 Beta vulgaris HOM05D001366 ORTHO05D005449 2.2e-33 145.6 107 63.6
DCAR_006444 Daucus carota HOM05D001366 ORTHO05D005449 2.2e-33 145.6 107 63.6
Os05g0107700 Oryza sativa ssp. japonica HOM05D001366 ORTHO05D005449 2.2e-33 145.6 107 63.6
PSO761G0276 Papaver somniferum HOM05D001366 ORTHO05D005449 2.2e-33 145.6 107 63.6
PSO013G0324 Papaver somniferum HOM05D001366 ORTHO05D005449 2.9e-33 145.2 107 63.6
PGR042G3224 Punica granatum HOM05D001366 ORTHO05D005449 2.9e-33 145.2 107 63.6
Rhsim07G0213700 Rhododendron simsii HOM05D001366 ORTHO05D005449 2.9e-33 145.2 107 63.6
TWI09G0135 Tripterygium wilfordii HOM05D001366 ORTHO05D005449 2.9e-33 145.2 107 63.6
GSVIVG01009213001 Vitis vinifera HOM05D001366 ORTHO05D005449 2.9e-33 145.2 107 63.6
Lalb_Chr08g0242611 Lupinus albus HOM05D001366 ORTHO05D005449 3.8e-33 144.8 107 64.5
Manes.18G057000 Manihot esculenta HOM05D001366 ORTHO05D005449 3.8e-33 144.8 107 63.6
Nitab4.5_0000885g0060 Nicotiana tabacum HOM05D001366 ORTHO05D005449 3.8e-33 144.8 107 62.6
PSO832G3977 Papaver somniferum HOM05D001366 ORTHO05D005449 3.8e-33 144.8 107 62.6
Hund07854 Selenicereus undatus HOM05D001366 ORTHO05D005449 3.8e-33 144.8 107 63.6
THA.LOC104799853 Tarenaya hassleriana HOM05D001366 ORTHO05D005449 3.8e-33 144.8 107 62.6
BcaC06g32884 Brassica carinata HOM05D001366 ORTHO05D005449 4.9e-33 144.4 107 62.6
BolC7t45851H Brassica oleracea HOM05D001366 ORTHO05D005449 4.9e-33 144.4 107 62.6
Duzib041G0019 Durio zibethinus HOM05D001366 ORTHO05D005449 4.9e-33 144.4 107 61.7
SalBow3G1925 Salvia bowleyana HOM05D001366 ORTHO05D005449 4.9e-33 144.4 107 62.6
Zm00001eb356100 Zea mays HOM05D001366 ORTHO05D005449 4.9e-33 144.4 107 62.6
Aqoxy2G03242 Aquilegia oxysepala HOM05D001366 ORTHO05D005449 6.4e-33 144.1 107 63.6
arahy.Tifrunner.gnm1.ann1.T41BVH Arachis hypogaea HOM05D001366 ORTHO05D005449 6.4e-33 144.1 107 64.5
CSS0026904 Camellia sinensis var. sinensis HOM05D001366 ORTHO05D005449 6.4e-33 144.1 107 62.6
CANSAT25G2801 Cannabis sativa HOM05D001366 ORTHO05D005449 6.4e-33 144.1 107 63.6
Haze_22489 Corylus avellana HOM05D001366 ORTHO05D005449 6.4e-33 144.1 107 64.5
THA.LOC104815469 Tarenaya hassleriana HOM05D001366 ORTHO05D005449 6.4e-33 144.1 107 62.6
unitig_22.g6842 Utricularia gibba HOM05D001366 ORTHO05D005449 6.4e-33 144.1 104 62.5
Aqoxy6G00666 Aquilegia oxysepala HOM05D001366 ORTHO05D005449 8.4e-33 143.7 107 62.6
Hma1.2p1_0125F.1_g058680 Hydrangea macrophylla HOM05D001366 ORTHO05D005449 8.4e-33 143.7 107 62.6
Sed0016266 Sechium edule HOM05D001366 ORTHO05D005449 8.4e-33 143.7 107 60.7
MSTRG.5323 Avicennia marina HOM05D001366 ORTHO05D005449 1.1e-32 143.3 107 62.6
BcaNung05637 Brassica carinata HOM05D001366 ORTHO05D005449 1.1e-32 143.3 107 61.7
A03p55290 Brassica napus HOM05D001366 ORTHO05D005449 1.1e-32 143.3 107 61.7
C07p53590 Brassica napus HOM05D001366 ORTHO05D005449 1.1e-32 143.3 107 61.7
BraA03t14588Z Brassica rapa HOM05D001366 ORTHO05D005449 1.1e-32 143.3 107 61.7
CAN.G1104.8 Capsicum annuum HOM05D001366 ORTHO05D005449 1.1e-32 143.3 107 62.6
Gohir.A05G264200 Gossypium hirsutum HOM05D001366 ORTHO05D005449 1.1e-32 143.3 107 62.6
Gorai.009G278800 Gossypium raimondii HOM05D001366 ORTHO05D005449 1.1e-32 143.3 107 62.6
Solyc12g088030.2 Solanum lycopersicum HOM05D001366 ORTHO05D005449 1.1e-32 143.3 107 62.6
Sopen12g030060 Solanum pennellii HOM05D001366 ORTHO05D005449 1.1e-32 143.3 107 62.6
TWI73G1055 Tripterygium wilfordii HOM05D001366 ORTHO05D005449 1.1e-32 143.3 107 63.6
Actinidia29656 Actinidia chinensis HOM05D001366 ORTHO05D005449 1.4e-32 142.9 107 62.6
HanXRQChr03g0063191 Helianthus annuus HOM05D001366 ORTHO05D005449 1.9e-32 142.5 107 63.6
ECA240G3991 Erigeron canadensis HOM05D001366 ORTHO05D005449 2.4e-32 142.1 107 62.6
Gohir.D05G266700 Gossypium hirsutum HOM05D001366 ORTHO05D005449 2.4e-32 142.1 107 62.6
TAR625G0060 Trochodendron aralioides HOM05D001366 ORTHO05D005449 2.4e-32 142.1 107 62.6
CiPaw.07G162800 Carya illinoinensis HOM05D001366 ORTHO05D005449 3.2e-32 141.7 107 61.7
Migut.N01147 Erythranthe guttata HOM05D001366 ORTHO05D005449 3.2e-32 141.7 107 60.7
Nitab4.5_0000354g0080 Nicotiana tabacum HOM05D001366 ORTHO05D005449 3.2e-32 141.7 107 61.7
PGSC0003DMG400002052 Solanum tuberosum HOM05D001366 ORTHO05D005449 3.2e-32 141.7 107 61.7
CiPaw.08G057200 Carya illinoinensis HOM05D001366 ORTHO05D005449 4.2e-32 141.4 107 61.7
HanXRQChr10g0277741 Helianthus annuus HOM05D001366 ORTHO05D005449 4.2e-32 141.4 107 61.7
Lsat_1_v5_gn_6_107360 Lactuca sativa HOM05D001366 ORTHO05D005449 4.2e-32 141.4 106 61.3
SalBow6G3832 Salvia bowleyana HOM05D001366 ORTHO05D005449 4.2e-32 141.4 107 60.7
SalBow6G5818 Salvia bowleyana HOM05D001366 ORTHO05D005449 4.2e-32 141.4 107 60.7
TPR.G38776 Trifolium pratense HOM05D001366 ORTHO05D005449 5.4e-32 141.0 104 63.5
MSTRG.16686 Avicennia marina HOM05D001366 ORTHO05D005449 7.1e-32 140.6 105 60.0
Zm00001eb139900 Zea mays HOM05D001366 ORTHO05D005449 7.1e-32 140.6 104 63.5
Ah.01g003970 Amaranthus hybridus HOM05D001366 ORTHO05D005449 9.3e-32 140.2 107 61.7
Gohir.A05G216500 Gossypium hirsutum HOM05D001366 ORTHO05D005449 1.2e-31 139.8 117 59.0
SGA_v2.0_scaffold337G49194 Striga asiatica HOM05D001366 ORTHO05D005449 1.2e-31 139.8 104 60.6
MSTRG.27758 Avicennia marina HOM05D001366 ORTHO05D005449 2.1e-31 139.0 107 60.7
SGA_v2.0_scaffold219G42523 Striga asiatica HOM05D001366 ORTHO05D005449 6.0e-31 137.5 104 59.6
Oeu040884.1 Olea europaea HOM05D001366 ORTHO05D005449 1.3e-30 136.3 107 58.9
Os01g0970500 Oryza sativa ssp. japonica HOM05D001366 ORTHO05D005449 1.3e-30 136.3 104 59.6
Rhsim02G0071900 Rhododendron simsii HOM05D001366 ORTHO05D005449 1.3e-30 136.3 123 55.3
TWI56G0439 Tripterygium wilfordii HOM05D001366 ORTHO05D005449 1.3e-30 136.3 107 58.9
Psat0s2399g0160 Pisum sativum HOM05D001366 ORTHO05D005449 5.1e-30 134.4 104 60.6
Sabra05G0119200 Salix brachista HOM05D001366 ORTHO05D005449 2.8e-28 128.6 133 51.1
SHI29728 Sapria himalayana HOM05D001366 ORTHO05D005449 2.8e-28 128.6 107 60.7
Duzib116G0949 Durio zibethinus HOM05D001366 ORTHO05D005449 8.1e-28 127.1 107 58.9
Actinidia19254 Actinidia chinensis HOM05D001366 ORTHO05D005449 3.1e-27 125.2 107 55.1
MD08G1203900 Malus domestica HOM05D001366 ORTHO05D005449 5.3e-27 124.4 92 64.1
ECA246G1742 Erigeron canadensis HOM05D001366 ORTHO05D005449 6.9e-27 124.0 85 64.7
AUR62017035 Chenopodium quinoa HOM05D001366 ORTHO05D005449 2.0e-26 122.5 92 63.0
TAR381G0322 Trochodendron aralioides HOM05D001366 ORTHO05D005449 9.9e-26 120.2 103 59.2
Lsat_1_v5_gn_7_43741 Lactuca sativa HOM05D001366 ORTHO05D005449 1.7e-25 119.4 83 65.1
Haze_27711 Corylus avellana HOM05D001366 ORTHO05D005449 9.3e-24 113.6 101 52.5
Oeu038169.3 Olea europaea HOM05D001366 ORTHO05D005449 9.3e-24 113.6 165 40.0
RcHm_v2.0_Chr5g0012851 Rosa chinensis HOM05D001366 ORTHO05D005449 7.4e-21 104.0 102 51.0
Actinidia19617 Actinidia chinensis HOM05D001366 ORTHO05D005449 1.8e-19 99.4 71 66.2
Migut.B00439 Erythranthe guttata HOM05D001366 ORTHO05D005449 6.9e-19 97.4 107 45.8
Mapoly0067s0078 Marchantia polymorpha HOM05D001366 ORTHO05D005449 7.6e-18 94.0 100 50.0
unitig_8.g3420 Utricularia gibba HOM05D001366 ORTHO05D005449 9.9e-18 93.6 93 48.4
AagrBONN_evm.TU.Sc2ySwM_368.1269 Anthoceros agrestis HOM05D001366 ORTHO05D005449 5.5e-16 87.8 106 43.4
Lsat_1_v5_gn_4_60280 Lactuca sativa HOM05D001366 ORTHO05D005449 1.0e-14 83.6 66 57.6
Dinv42590 Davidia involucrata HOM05D001366 ORTHO05D005449 1.1e-13 80.1 69 55.1
Ca_08744_v3 Cicer arietinum L. HOM05D001366 ORTHO05D005449 1.5e-13 79.7 60 63.3
vmacro04625 Vaccinium macrocarpon HOM05D001366 ORTHO05D005449 1.5e-13 79.7 60 61.7
VMungo0647G1399 Vigna mungo HOM05D001366 ORTHO05D005449 1.5e-13 79.7 60 63.3
QL09p018667 Quercus lobata HOM05D001366 ORTHO05D005449 2.8e-12 75.5 60 58.3
BcaC08g43388 Brassica carinata HOM05D001366 ORTHO05D005449 1.1e-11 73.6 84 45.2
Cre10.g424150 Chlamydomonas reinhardtii HOM05D001366 ORTHO05D005449 1.4e-11 73.2 110 33.6
C06p07570 Brassica napus HOM05D001366 ORTHO05D005449 1.0e-09 67.0 107 40.2
BolC6t35845H Brassica oleracea HOM05D001366 ORTHO05D005449 1.0e-09 67.0 107 40.2
PRCOL_00001724 Prasinoderma coloniale HOM05D001366 ORTHO05D005449 8.4e-09 63.9 92 34.8
AUR62014838 Chenopodium quinoa HOM05D001366 ORTHO05D005449 5.5e-08 61.2 53 52.8
HanXRQChr05g0143271 Helianthus annuus HOM05D001366 ORTHO05D005449 7.1e-08 60.8 51 52.9


User provided reference genes

Program Settings