Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c2_34320 Physcomitrium patens HOM05D004635 ORTHO05D005899 0.0e+00 1219.1 644 100.0
AagrBONN_evm.TU.Sc2ySwM_362.355 Anthoceros agrestis HOM05D004635 ORTHO05D005899 6.9e-114 415.6 676 42.0
THA.LOC104818064 Tarenaya hassleriana HOM05D004635 ORTHO05D005899 3.2e-111 406.8 661 41.5
PSO339G4625 Papaver somniferum HOM05D004635 ORTHO05D005899 5.4e-111 406.0 654 40.7
Aqoxy5G04278 Aquilegia oxysepala HOM05D004635 ORTHO05D005899 3.0e-109 400.2 657 41.2
MBI18_g19087_MAGBIO Magnolia biondii HOM05D004635 ORTHO05D005899 3.9e-109 399.8 675 41.2
PSO170G0760 Papaver somniferum HOM05D004635 ORTHO05D005899 3.9e-109 399.8 662 41.2
SEGI_23350 Sequoiadendron giganteum HOM05D004635 ORTHO05D005899 1.9e-108 397.5 669 39.6
Carub.0007s3429 Capsella rubella HOM05D004635 ORTHO05D005899 4.3e-108 396.4 651 39.8
PSO017G3139 Papaver somniferum HOM05D004635 ORTHO05D005899 4.3e-108 396.4 655 41.8
PSO384G0809 Papaver somniferum HOM05D004635 ORTHO05D005899 7.4e-108 395.6 659 41.1
Nn1g02763 Nelumbo nucifera HOM05D004635 ORTHO05D005899 9.6e-108 395.2 656 41.9
MD14G1101800 Malus domestica HOM05D004635 ORTHO05D005899 1.6e-107 394.4 665 41.4
AUR62017259 Chenopodium quinoa HOM05D004635 ORTHO05D005899 3.7e-107 393.3 661 41.1
Gohir.D09G186900 Gossypium hirsutum HOM05D004635 ORTHO05D005899 6.2e-107 392.5 665 41.2
Nn5g27546 Nelumbo nucifera HOM05D004635 ORTHO05D005899 1.1e-106 391.7 670 40.9
Gorai.006G209700 Gossypium raimondii HOM05D004635 ORTHO05D005899 1.8e-106 391.0 665 41.1
TAR636G1354 Trochodendron aralioides HOM05D004635 ORTHO05D005899 3.1e-106 390.2 653 41.0
Phvul.002G288000 Phaseolus vulgaris HOM05D004635 ORTHO05D005899 4.0e-106 389.8 665 40.2
arahy.Tifrunner.gnm1.ann1.NB74KP Arachis hypogaea HOM05D004635 ORTHO05D005899 9.0e-106 388.7 655 40.6
Glyma.08G013300 Glycine max HOM05D004635 ORTHO05D005899 9.0e-106 388.7 663 40.7
Gohir.A09G192700 Gossypium hirsutum HOM05D004635 ORTHO05D005899 9.0e-106 388.7 665 40.8
CsaV3_5G002950 Cucumis sativus L. HOM05D004635 ORTHO05D005899 1.2e-105 388.3 653 39.8
ATR0064G111 Amborella trichopoda HOM05D004635 ORTHO05D005899 1.5e-105 387.9 643 40.4
Eucgr.E00572 Eucalyptus grandis HOM05D004635 ORTHO05D005899 1.5e-105 387.9 679 39.0
VMungo0251G2718 Vigna mungo HOM05D004635 ORTHO05D005899 1.5e-105 387.9 660 38.9
Cfa012156 Carpinus fangiana HOM05D004635 ORTHO05D005899 2.0e-105 387.5 653 42.3
Haze_08871 Corylus avellana HOM05D004635 ORTHO05D005899 2.6e-105 387.1 656 41.2
MELO3C005661.2 Cucumis melo HOM05D004635 ORTHO05D005899 2.6e-105 387.1 647 39.9
Sp7g00720 Schrenkiella parvula HOM05D004635 ORTHO05D005899 2.6e-105 387.1 642 40.5
SpUn0010_0200 Schrenkiella parvula HOM05D004635 ORTHO05D005899 2.6e-105 387.1 642 40.5
Hund11485 Selenicereus undatus HOM05D004635 ORTHO05D005899 2.6e-105 387.1 682 39.4
arahy.Tifrunner.gnm1.ann1.Y4HLQF Arachis hypogaea HOM05D004635 ORTHO05D005899 3.4e-105 386.7 644 40.8
PGR042G2640 Punica granatum HOM05D004635 ORTHO05D005899 1.0e-104 385.2 655 40.3
EL10Ac5g12781 Beta vulgaris HOM05D004635 ORTHO05D005899 1.3e-104 384.8 653 40.1
Manes.01G063000 Manihot esculenta HOM05D004635 ORTHO05D005899 1.3e-104 384.8 660 40.2
Lj4g0017456 Lotus japonicus HOM05D004635 ORTHO05D005899 1.7e-104 384.4 653 40.6
RcHm_v2.0_Chr7g0211871 Rosa chinensis HOM05D004635 ORTHO05D005899 1.7e-104 384.4 660 40.2
Actinidia02016 Actinidia chinensis HOM05D004635 ORTHO05D005899 2.2e-104 384.0 666 41.0
AL7G48240 Arabidopsis lyrata HOM05D004635 ORTHO05D005899 2.2e-104 384.0 654 39.3
Thhalv10027696m.g Eutrema salsugineum HOM05D004635 ORTHO05D005899 2.2e-104 384.0 643 41.5
Aa31LG9G660 Aethionema arabicum HOM05D004635 ORTHO05D005899 3.8e-104 383.3 642 38.9
SGA_v2.0_scaffold146G36254 Striga asiatica HOM05D004635 ORTHO05D005899 3.8e-104 383.3 650 39.8
Duzib084G1397 Durio zibethinus HOM05D004635 ORTHO05D005899 6.4e-104 382.5 651 40.7
CANSAT78G0227 Cannabis sativa HOM05D004635 ORTHO05D005899 8.4e-104 382.1 652 41.7
Sabra03G0088200 Salix brachista HOM05D004635 ORTHO05D005899 1.1e-103 381.7 659 39.0
HanXRQChr13g0416481 Helianthus annuus HOM05D004635 ORTHO05D005899 1.9e-103 380.9 654 38.5
Cc08_g14490 Coffea canephora HOM05D004635 ORTHO05D005899 2.5e-103 380.6 625 39.8
CSS0019840 Camellia sinensis var. sinensis HOM05D004635 ORTHO05D005899 3.2e-103 380.2 656 40.5
Nitab4.5_0003907g0020 Nicotiana tabacum HOM05D004635 ORTHO05D005899 3.2e-103 380.2 624 41.8
Thecc.03G276500 Theobroma cacao HOM05D004635 ORTHO05D005899 4.2e-103 379.8 653 40.1
BcaC02g08976 Brassica carinata HOM05D004635 ORTHO05D005899 9.3e-103 378.6 651 40.2
BolC4t26422H Brassica oleracea HOM05D004635 ORTHO05D005899 9.3e-103 378.6 651 40.2
AT5G41190 Arabidopsis thaliana HOM05D004635 ORTHO05D005899 1.2e-102 378.3 662 39.4
Potri.003G124700 Populus trichocarpa HOM05D004635 ORTHO05D005899 1.2e-102 378.3 658 38.3
Lsat_1_v5_gn_6_87181 Lactuca sativa HOM05D004635 ORTHO05D005899 1.6e-102 377.9 611 41.7
vmacro11312 Vaccinium macrocarpon HOM05D004635 ORTHO05D005899 1.6e-102 377.9 631 41.2
arahy.Tifrunner.gnm1.ann1.MF5MQE Arachis hypogaea HOM05D004635 ORTHO05D005899 2.1e-102 377.5 655 38.5
Ca_17544_v3 Cicer arietinum L. HOM05D004635 ORTHO05D005899 2.1e-102 377.5 660 38.8
Atru.chr9.2220 Acer truncatum HOM05D004635 ORTHO05D005899 3.5e-102 376.7 668 39.1
ECA240G4094 Erigeron canadensis HOM05D004635 ORTHO05D005899 3.5e-102 376.7 611 40.1
EL10Ac1g00317 Beta vulgaris HOM05D004635 ORTHO05D005899 4.6e-102 376.3 646 39.8
C04p48290 Brassica napus HOM05D004635 ORTHO05D005899 6.0e-102 375.9 645 40.2
Medtr8g098490 Medicago truncatula HOM05D004635 ORTHO05D005899 6.0e-102 375.9 650 40.0
arahy.Tifrunner.gnm1.ann1.BGY2GF Arachis hypogaea HOM05D004635 ORTHO05D005899 7.9e-102 375.6 659 38.5
Hma1.2p1_0377F.1_g139240 Hydrangea macrophylla HOM05D004635 ORTHO05D005899 7.9e-102 375.6 651 40.9
Lalb_Chr05g0224871 Lupinus albus HOM05D004635 ORTHO05D005899 7.9e-102 375.6 670 39.1
MSTRG.13840 Avicennia marina HOM05D004635 ORTHO05D005899 1.0e-101 375.2 652 40.3
BcaB06g27604 Brassica carinata HOM05D004635 ORTHO05D005899 1.0e-101 375.2 643 39.2
Ciclev10019281m.g Citrus clementina HOM05D004635 ORTHO05D005899 1.0e-101 375.2 668 39.2
FAN18G1690 Fragaria x ananassa HOM05D004635 ORTHO05D005899 1.0e-101 375.2 620 40.3
TPR.G12861 Trifolium pratense HOM05D004635 ORTHO05D005899 2.3e-101 374.0 654 40.1
COL.COLO4_34438 Corchorus olitorius HOM05D004635 ORTHO05D005899 3.0e-101 373.6 652 39.0
Dinv38955 Davidia involucrata HOM05D004635 ORTHO05D005899 3.9e-101 373.2 650 39.1
FAN18G0535 Fragaria x ananassa HOM05D004635 ORTHO05D005899 5.1e-101 372.9 615 39.7
GSVIVG01019776001 Vitis vinifera HOM05D004635 ORTHO05D005899 5.1e-101 372.9 645 38.9
PGSC0003DMG400029793 Solanum tuberosum HOM05D004635 ORTHO05D005899 6.7e-101 372.5 628 40.9
DCAR_000603 Daucus carota HOM05D004635 ORTHO05D005899 1.1e-100 371.7 650 40.9
FAN13G3179 Fragaria x ananassa HOM05D004635 ORTHO05D005899 1.1e-100 371.7 620 40.3
Nitab4.5_0004836g0050 Nicotiana tabacum HOM05D004635 ORTHO05D005899 1.1e-100 371.7 622 42.1
TWI81G1014 Tripterygium wilfordii HOM05D004635 ORTHO05D005899 1.5e-100 371.3 655 40.2
HPP92_020857 Vanilla planifolia HOM05D004635 ORTHO05D005899 1.9e-100 370.9 661 38.0
Psat7g034520 Pisum sativum HOM05D004635 ORTHO05D005899 2.5e-100 370.5 624 40.7
AUR62010616 Chenopodium quinoa HOM05D004635 ORTHO05D005899 4.3e-100 369.8 661 39.0
FAN04G0694 Fragaria x ananassa HOM05D004635 ORTHO05D005899 4.3e-100 369.8 617 39.4
BraA07t29762Z Brassica rapa HOM05D004635 ORTHO05D005899 5.7e-100 369.4 642 38.9
FvH4_5g23090 Fragaria vesca HOM05D004635 ORTHO05D005899 5.7e-100 369.4 615 39.5
CAN.G792.84 Capsicum annuum HOM05D004635 ORTHO05D005899 9.6e-100 368.6 624 40.7
A07p20710 Brassica napus HOM05D004635 ORTHO05D005899 1.3e-99 368.2 640 39.8
BraA04t17085Z Brassica rapa HOM05D004635 ORTHO05D005899 1.3e-99 368.2 644 39.6
Lj6A677T80 Lonicera japonica HOM05D004635 ORTHO05D005899 1.3e-99 368.2 666 39.6
QL01p003129 Quercus lobata HOM05D004635 ORTHO05D005899 1.6e-99 367.9 619 41.2
TAR629G3080 Trochodendron aralioides HOM05D004635 ORTHO05D005899 2.1e-99 367.5 632 41.6
Prupe.5G097400 Prunus persica HOM05D004635 ORTHO05D005899 3.7e-99 366.7 657 39.0
A04p14360 Brassica napus HOM05D004635 ORTHO05D005899 4.8e-99 366.3 644 39.4
ClCG01G002860 Citrullus lanatus HOM05D004635 ORTHO05D005899 6.2e-99 365.9 656 38.9
Peaxi162Scf00102g01512 Petunia axillaris HOM05D004635 ORTHO05D005899 6.2e-99 365.9 624 41.3
SalBow6G1328 Salvia bowleyana HOM05D004635 ORTHO05D005899 1.4e-98 364.8 652 39.6
Sed0015372 Sechium edule HOM05D004635 ORTHO05D005899 1.8e-98 364.4 652 38.8
Cpa.g.sc202.13 Carica papaya HOM05D004635 ORTHO05D005899 4.5e-97 359.8 652 39.0
PGSC0003DMG400005819 Solanum tuberosum HOM05D004635 ORTHO05D005899 4.6e-94 349.7 634 38.8
Solyc08g007990.3 Solanum lycopersicum HOM05D004635 ORTHO05D005899 6.1e-94 349.4 628 38.9
CARHR213190 Cardamine hirsuta HOM05D004635 ORTHO05D005899 1.8e-93 347.8 637 38.9
Sopen08g003860 Solanum pennellii HOM05D004635 ORTHO05D005899 1.8e-93 347.8 634 39.3
FAN08G3353 Fragaria x ananassa HOM05D004635 ORTHO05D005899 6.7e-93 345.9 577 39.5
RcHm_v2.0_Chr7g0179141 Rosa chinensis HOM05D004635 ORTHO05D005899 1.5e-92 344.7 646 38.5
Zm00001eb209610 Zea mays HOM05D004635 ORTHO05D005899 1.6e-91 341.3 656 38.1
Os02g0114700 Oryza sativa ssp. japonica HOM05D004635 ORTHO05D005899 9.0e-90 335.5 611 38.3
CDE06G0591 Ceratophyllum demersum HOM05D004635 ORTHO05D005899 5.0e-88 329.7 550 40.7
SMO171G0086 Selaginella moellendorffii HOM05D004635 ORTHO05D005899 5.5e-87 326.2 640 37.5
BcaB02g07904 Brassica carinata HOM05D004635 ORTHO05D005899 9.4e-87 325.5 643 37.8
Sed0018462 Sechium edule HOM05D004635 ORTHO05D005899 6.7e-85 319.3 553 39.6
Glyma.05G206400 Glycine max HOM05D004635 ORTHO05D005899 4.1e-82 310.1 591 37.1
Thhalv10009994m.g Eutrema salsugineum HOM05D004635 ORTHO05D005899 2.0e-81 307.8 645 34.3
unitig_37.g12250 Utricularia gibba HOM05D004635 ORTHO05D005899 4.5e-81 306.6 600 36.5
CiPaw.11G137400 Carya illinoinensis HOM05D004635 ORTHO05D005899 1.0e-77 295.4 575 39.8
Oeu011058.1 Olea europaea HOM05D004635 ORTHO05D005899 3.3e-76 290.4 647 34.2
Mapoly0033s0014 Marchantia polymorpha HOM05D004635 ORTHO05D005899 2.8e-75 287.3 592 39.0
Zm00001eb229850 Zea mays HOM05D004635 ORTHO05D005899 3.7e-75 287.0 545 37.2
BcaC08g44516 Brassica carinata HOM05D004635 ORTHO05D005899 4.8e-75 286.6 643 34.7
CBR_g50931 Chara braunii HOM05D004635 ORTHO05D005899 1.7e-67 261.5 770 32.7
Carub.0004s0410 Capsella rubella HOM05D004635 ORTHO05D005899 1.6e-65 255.0 548 34.3
Actinidia14552 Actinidia chinensis HOM05D004635 ORTHO05D005899 4.2e-63 246.9 521 37.2
Migut.A00784 Erythranthe guttata HOM05D004635 ORTHO05D005899 1.6e-57 228.4 456 37.5
Sc01g0009470 Simmondsia chinensis HOM05D004635 ORTHO05D005899 2.9e-56 224.2 516 35.7
Dinv37658 Davidia involucrata HOM05D004635 ORTHO05D005899 2.8e-51 207.6 277 43.3
RcHm_v2.0_Chr7g0211921 Rosa chinensis HOM05D004635 ORTHO05D005899 2.8e-51 207.6 432 38.0
C06p19650 Brassica napus HOM05D004635 ORTHO05D005899 3.7e-51 207.2 362 39.5
RcHm_v2.0_Chr2g0099081 Rosa chinensis HOM05D004635 ORTHO05D005899 9.1e-50 202.6 537 32.2
BolC6t37157H Brassica oleracea HOM05D004635 ORTHO05D005899 2.0e-49 201.4 274 41.6
MCO14G249 Micromonas commoda HOM05D004635 ORTHO05D005899 1.8e-45 188.3 610 29.5
CDE05G1698 Ceratophyllum demersum HOM05D004635 ORTHO05D005899 2.9e-43 181.0 308 41.6
BolC6t37158H Brassica oleracea HOM05D004635 ORTHO05D005899 8.6e-40 169.5 260 43.1
BcaC08g44514 Brassica carinata HOM05D004635 ORTHO05D005899 2.8e-38 164.5 143 53.1
FAN28G2416 Fragaria x ananassa HOM05D004635 ORTHO05D005899 2.8e-38 164.5 369 36.0
Cre01.g031750 Chlamydomonas reinhardtii HOM05D004635 ORTHO05D005899 3.6e-38 164.1 577 28.9
FAN26G1714 Fragaria x ananassa HOM05D004635 ORTHO05D005899 4.7e-38 163.7 392 34.9
Dinv37657 Davidia involucrata HOM05D004635 ORTHO05D005899 1.4e-37 162.2 236 44.1
PRCOL_00006831 Prasinoderma coloniale HOM05D004635 ORTHO05D005899 1.5e-36 158.7 611 27.3
BolC9t58686H Brassica oleracea HOM05D004635 ORTHO05D005899 2.0e-28 131.7 277 34.7
RcHm_v2.0_Chr7g0211961 Rosa chinensis HOM05D004635 ORTHO05D005899 9.8e-28 129.4 222 40.1
C06p19660 Brassica napus HOM05D004635 ORTHO05D005899 4.9e-27 127.1 147 49.0
BcaC04g18687 Brassica carinata HOM05D004635 ORTHO05D005899 1.7e-24 118.6 383 30.8
C09p58220 Brassica napus HOM05D000111 ORTHO05D000134 8.1e-22 109.8 383 31.1
VMungo1127G2192 Vigna mungo HOM05D004635 ORTHO05D005899 2.7e-17 94.7 160 35.6
QL12p018319 Quercus lobata HOM05D004635 ORTHO05D005899 4.4e-12 77.4 90 47.8
Solyc12g015770.3 Solanum lycopersicum HOM05D000074 ORTHO05D001262 1.4e-10 72.4 60 55.0
EL10Ac8g19215 Beta vulgaris HOM05D000238 ORTHO05D001043 3.2e-10 71.2 97 37.1


User provided reference genes

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