Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c2_16830 Physcomitrium patens HOM05D003576 ORTHO05D004124 2.6e-199 698.7 416 100.0
Pp3c1_22690 Physcomitrium patens HOM05D003576 ORTHO05D004124 3.8e-150 535.4 419 75.9
Pp3c10_5620 Physcomitrium patens HOM05D003576 ORTHO05D004124 1.9e-141 506.5 396 72.2
Mapoly0154s0022 Marchantia polymorpha HOM05D003576 ORTHO05D004124 2.6e-106 389.8 278 68.7
AagrBONN_evm.TU.Sc2ySwM_228.4941 Anthoceros agrestis HOM05D003576 ORTHO05D004124 1.8e-102 377.1 325 60.6
SMO356G0089 Selaginella moellendorffii HOM05D003576 ORTHO05D004124 2.1e-100 370.2 306 60.1
TAR633G2490 Trochodendron aralioides HOM05D003576 ORTHO05D004124 3.8e-97 359.4 265 63.8
Nn2g13102 Nelumbo nucifera HOM05D003576 ORTHO05D004124 8.4e-97 358.2 267 62.9
Aqoxy1G02388 Aquilegia oxysepala HOM05D003576 ORTHO05D004124 4.2e-96 355.9 289 60.9
CDE04G0074 Ceratophyllum demersum HOM05D003576 ORTHO05D004124 9.3e-96 354.8 271 64.2
PSO384G2156 Papaver somniferum HOM05D003576 ORTHO05D004124 1.3e-94 350.9 257 65.0
PSO339G2752 Papaver somniferum HOM05D003576 ORTHO05D004124 5.1e-94 349.0 257 64.6
Cc02_g11340 Coffea canephora HOM05D003576 ORTHO05D004124 1.1e-93 347.8 276 60.9
vmacro07071 Vaccinium macrocarpon HOM05D003576 ORTHO05D004124 3.3e-93 346.3 292 58.2
Rhsim03G0120500 Rhododendron simsii HOM05D003576 ORTHO05D004124 3.7e-92 342.8 268 61.2
ATR0048G008 Amborella trichopoda HOM05D003576 ORTHO05D004124 4.8e-92 342.4 282 61.7
PSO063G6153 Papaver somniferum HOM05D003576 ORTHO05D004124 8.1e-92 341.7 233 67.8
Gohir.A10G205700 Gossypium hirsutum HOM05D003576 ORTHO05D004124 1.1e-91 341.3 266 61.3
Gohir.D10G214000 Gossypium hirsutum HOM05D003576 ORTHO05D004124 1.1e-91 341.3 266 61.3
Gorai.011G239400 Gossypium raimondii HOM05D003576 ORTHO05D004124 1.1e-91 341.3 266 61.3
Medtr6g033535 Medicago truncatula HOM05D003576 ORTHO05D004124 1.1e-91 341.3 264 62.5
Lj3A882G53 Lonicera japonica HOM05D003576 ORTHO05D004124 1.4e-91 340.9 266 61.7
CSS0018972 Camellia sinensis var. sinensis HOM05D003576 ORTHO05D004124 1.8e-91 340.5 266 61.7
CSS0040774 Camellia sinensis var. sinensis HOM05D003576 ORTHO05D004124 1.8e-91 340.5 266 61.7
Dinv36441 Davidia involucrata HOM05D003576 ORTHO05D004124 3.1e-91 339.7 264 61.4
Hma1.2p1_0382F.1_g140100 Hydrangea macrophylla HOM05D003576 ORTHO05D004124 4.0e-91 339.3 266 62.0
HPP92_020748 Vanilla planifolia HOM05D003576 ORTHO05D004124 4.0e-91 339.3 265 61.9
Zm00001eb273430 Zea mays HOM05D003576 ORTHO05D004124 5.3e-91 339.0 273 59.3
Cfa021515 Carpinus fangiana HOM05D003576 ORTHO05D004124 6.9e-91 338.6 270 60.0
DCAR_019104 Daucus carota HOM05D003576 ORTHO05D004124 6.9e-91 338.6 270 59.6
Ciclev10032124m.g Citrus clementina HOM05D003576 ORTHO05D004124 2.0e-90 337.0 282 59.9
Lalb_Chr01g0010001 Lupinus albus HOM05D003576 ORTHO05D004124 2.0e-90 337.0 261 60.9
PGR142G1591 Punica granatum HOM05D003576 ORTHO05D004124 3.4e-90 336.3 281 57.3
Actinidia38283 Actinidia chinensis HOM05D003576 ORTHO05D004124 4.5e-90 335.9 267 61.4
Lalb_Chr03g0035911 Lupinus albus HOM05D003576 ORTHO05D004124 4.5e-90 335.9 261 60.2
FvH4_2g18840 Fragaria vesca HOM05D003576 ORTHO05D004124 5.8e-90 335.5 266 59.0
Thecc.10G074000 Theobroma cacao HOM05D003576 ORTHO05D004124 5.8e-90 335.5 266 60.2
arahy.Tifrunner.gnm1.ann1.33B581 Arachis hypogaea HOM05D003576 ORTHO05D004124 7.6e-90 335.1 277 58.5
Atru.chr12.780 Acer truncatum HOM05D003576 ORTHO05D004124 1.0e-89 334.7 261 61.7
arahy.Tifrunner.gnm1.ann1.THE0XD Arachis hypogaea HOM05D003576 ORTHO05D004124 1.0e-89 334.7 277 58.5
ECA232G3526 Erigeron canadensis HOM05D003576 ORTHO05D004124 1.0e-89 334.7 291 56.4
Potri.008G039500 Populus trichocarpa HOM05D003576 ORTHO05D004124 1.0e-89 334.7 270 61.1
Atru.chr12.756 Acer truncatum HOM05D003576 ORTHO05D004124 1.3e-89 334.3 261 61.7
ClCG08G007510 Citrullus lanatus HOM05D003576 ORTHO05D004124 1.3e-89 334.3 287 57.5
CANSAT56G0320 Cannabis sativa HOM05D003576 ORTHO05D004124 1.7e-89 334.0 266 59.4
Nitab4.5_0000476g0030 Nicotiana tabacum HOM05D003576 ORTHO05D004124 1.7e-89 334.0 291 57.7
PSO339G5183 Papaver somniferum HOM05D003576 ORTHO05D004124 1.7e-89 334.0 225 68.4
CAN.G694.86 Capsicum annuum HOM05D003576 ORTHO05D004124 2.2e-89 333.6 291 57.0
AUR62018250 Chenopodium quinoa HOM05D003576 ORTHO05D004124 2.2e-89 333.6 269 60.6
Migut.F01985 Erythranthe guttata HOM05D003576 ORTHO05D004124 2.2e-89 333.6 293 56.0
Lj2g0011631 Lotus japonicus HOM05D003576 ORTHO05D004124 2.9e-89 333.2 261 61.7
Phvul.004G083500 Phaseolus vulgaris HOM05D003576 ORTHO05D004124 2.9e-89 333.2 261 61.3
Sabra08G0027100 Salix brachista HOM05D003576 ORTHO05D004124 4.9e-89 332.4 272 60.3
Glyma.02G074100 Glycine max HOM05D003576 ORTHO05D004124 6.5e-89 332.0 280 58.6
RcHm_v2.0_Chr6g0284661 Rosa chinensis HOM05D003576 ORTHO05D004124 6.5e-89 332.0 266 59.0
CsaV3_6G036430 Cucumis sativus L. HOM05D003576 ORTHO05D004124 8.4e-89 331.6 280 57.5
TPR.G36712 Trifolium pratense HOM05D003576 ORTHO05D004124 8.4e-89 331.6 264 61.0
GSVIVG01016273001 Vitis vinifera HOM05D003576 ORTHO05D004124 8.4e-89 331.6 270 60.4
MSTRG.374 Avicennia marina HOM05D003576 ORTHO05D004124 1.1e-88 331.3 275 58.2
ECA238G1405 Erigeron canadensis HOM05D003576 ORTHO05D004124 1.1e-88 331.3 266 58.6
Os02g0805900 Oryza sativa ssp. japonica HOM05D003576 ORTHO05D004124 1.1e-88 331.3 273 57.9
Eucgr.J01085 Eucalyptus grandis HOM05D003576 ORTHO05D004124 1.4e-88 330.9 265 58.9
QL08p055786 Quercus lobata HOM05D003576 ORTHO05D004124 1.4e-88 330.9 276 58.7
Prupe.2G213500 Prunus persica HOM05D003576 ORTHO05D004124 2.5e-88 330.1 266 58.6
THA.LOC104827300 Tarenaya hassleriana HOM05D003576 ORTHO05D004124 2.5e-88 330.1 282 56.4
Manes.07G100300 Manihot esculenta HOM05D003576 ORTHO05D004124 3.2e-88 329.7 270 60.0
HanXRQChr15g0496951 Helianthus annuus HOM05D003576 ORTHO05D004124 4.2e-88 329.3 270 58.1
Sc20g0001840 Simmondsia chinensis HOM05D003576 ORTHO05D004124 5.5e-88 328.9 314 54.5
Lsat_1_v5_gn_9_69180 Lactuca sativa HOM05D003576 ORTHO05D004124 9.3e-88 328.2 266 58.6
MD01G1108400 Malus domestica HOM05D003576 ORTHO05D004124 1.6e-87 327.4 261 59.4
Potri.010G222800 Populus trichocarpa HOM05D003576 ORTHO05D004124 1.6e-87 327.4 272 60.3
Solyc05g056110.3 Solanum lycopersicum HOM05D003576 ORTHO05D004124 1.6e-87 327.4 266 59.0
Sopen05g034520 Solanum pennellii HOM05D003576 ORTHO05D004124 1.6e-87 327.4 266 59.0
Glyma.16G155600 Glycine max HOM05D003576 ORTHO05D004124 2.7e-87 326.6 280 57.5
CiPaw.02G173900 Carya illinoinensis HOM05D003576 ORTHO05D004124 3.5e-87 326.2 266 58.6
MD07G1174600 Malus domestica HOM05D003576 ORTHO05D004124 3.5e-87 326.2 266 58.3
Sed0006763 Sechium edule HOM05D003576 ORTHO05D004124 3.5e-87 326.2 278 56.8
Sabra10G0172200 Salix brachista HOM05D003576 ORTHO05D004124 4.6e-87 325.9 288 55.9
BcaNung01897 Brassica carinata HOM05D003576 ORTHO05D004124 6.0e-87 325.5 262 58.8
EL10Ac2g03301 Beta vulgaris HOM05D003576 ORTHO05D004124 7.9e-87 325.1 266 58.6
BcaNung06333 Brassica carinata HOM05D003576 ORTHO05D004124 1.3e-86 324.3 262 58.8
Nitab4.5_0009985g0010 Nicotiana tabacum HOM05D003576 ORTHO05D004124 1.3e-86 324.3 254 62.2
A02p02030 Brassica napus HOM05D003576 ORTHO05D004124 2.3e-86 323.6 262 58.4
ClCG05G021030 Citrullus lanatus HOM05D003576 ORTHO05D004124 2.3e-86 323.6 265 60.8
TWI15G0705 Tripterygium wilfordii HOM05D003576 ORTHO05D004124 3.0e-86 323.2 270 58.1
Carub.0006s1173 Capsella rubella HOM05D003576 ORTHO05D004124 3.9e-86 322.8 282 56.4
C02p06240 Brassica napus HOM05D003576 ORTHO05D004124 5.1e-86 322.4 262 58.8
BolC2t06566H Brassica oleracea HOM05D003576 ORTHO05D004124 5.1e-86 322.4 262 58.8
CsaV3_5G036280 Cucumis sativus L. HOM05D003576 ORTHO05D004124 5.1e-86 322.4 260 61.5
Sed0008938 Sechium edule HOM05D003576 ORTHO05D004124 6.7e-86 322.0 265 58.5
BcaC04g19105 Brassica carinata HOM05D003576 ORTHO05D004124 8.7e-86 321.6 287 56.1
CARHR199870 Cardamine hirsuta HOM05D003576 ORTHO05D004124 8.7e-86 321.6 282 56.4
AL6G24180 Arabidopsis lyrata HOM05D003576 ORTHO05D004124 1.1e-85 321.2 282 56.0
BcaC04g19106 Brassica carinata HOM05D003576 ORTHO05D004124 3.3e-85 319.7 289 55.7
FAN15G0532 Fragaria x ananassa HOM05D003576 ORTHO05D004124 4.3e-85 319.3 277 56.0
Thhalv10014094m.g Eutrema salsugineum HOM05D003576 ORTHO05D004124 7.4e-85 318.5 282 56.4
BolC9t59197H Brassica oleracea HOM05D003576 ORTHO05D004124 9.6e-85 318.2 289 55.7
BcaB01g05348 Brassica carinata HOM05D003576 ORTHO05D004124 1.3e-84 317.8 278 56.1
THA.LOC104809882 Tarenaya hassleriana HOM05D003576 ORTHO05D004124 1.3e-84 317.8 262 58.8
C09p63530 Brassica napus HOM05D003576 ORTHO05D004124 1.6e-84 317.4 289 55.7
AT5G13570 Arabidopsis thaliana HOM05D003576 ORTHO05D004124 2.8e-84 316.6 290 54.5
Sp6g30460 Schrenkiella parvula HOM05D003576 ORTHO05D004124 1.1e-83 314.7 282 55.3
Dinv31323 Davidia involucrata HOM05D003576 ORTHO05D004124 2.4e-83 313.5 238 61.8
SalBow3G2401 Salvia bowleyana HOM05D003576 ORTHO05D004124 2.4e-83 313.5 309 51.1
A10p24700 Brassica napus HOM05D003576 ORTHO05D004124 5.3e-83 312.4 290 54.1
FAN24G3530 Fragaria x ananassa HOM05D003576 ORTHO05D004124 2.6e-82 310.1 266 56.0
BraA10t44533Z Brassica rapa HOM05D003576 ORTHO05D004124 3.4e-82 309.7 290 53.8
AUR62037754 Chenopodium quinoa HOM05D003576 ORTHO05D004124 5.9e-82 308.9 263 57.8
Peaxi162Scf01175g00019 Petunia axillaris HOM05D003576 ORTHO05D004124 7.6e-82 308.5 266 57.9
MELO3C012428.2 Cucumis melo HOM05D003576 ORTHO05D004124 3.8e-81 306.2 231 64.1
CBR_g38931 Chara braunii HOM05D003576 ORTHO05D004124 8.5e-81 305.1 245 58.4
BcaNung01144 Brassica carinata HOM05D003576 ORTHO05D004124 1.1e-80 304.7 263 57.0
Actinidia06773 Actinidia chinensis HOM05D003576 ORTHO05D004124 4.2e-80 302.8 209 68.4
Aa31LG11G7770 Aethionema arabicum HOM05D003576 ORTHO05D004124 5.5e-80 302.4 313 50.5
Migut.F01761 Erythranthe guttata HOM05D003576 ORTHO05D004124 7.2e-80 302.0 262 56.5
CiPaw.01G272700 Carya illinoinensis HOM05D003576 ORTHO05D004124 1.6e-79 300.8 249 58.6
unitig_699.g19224 Utricularia gibba HOM05D003576 ORTHO05D004124 2.5e-77 293.5 294 52.7
SGA_v2.0_scaffold100G29594 Striga asiatica HOM05D003576 ORTHO05D004124 9.7e-77 291.6 310 49.7
BcaB06g27487 Brassica carinata HOM05D003576 ORTHO05D004124 1.1e-75 288.1 261 53.3
BraA04t16990Z Brassica rapa HOM05D003576 ORTHO05D004124 5.3e-75 285.8 264 52.3
A04p13320 Brassica napus HOM05D003576 ORTHO05D004124 9.1e-75 285.0 260 53.1
C04p47100 Brassica napus HOM05D003576 ORTHO05D004124 2.6e-74 283.5 264 51.9
BolC4t26304H Brassica oleracea HOM05D003576 ORTHO05D004124 2.6e-74 283.5 264 51.9
PGR044G0669 Punica granatum HOM05D003576 ORTHO05D004124 4.5e-74 282.7 239 58.6
COL.COLO4_23659 Corchorus olitorius HOM05D003576 ORTHO05D004124 1.0e-73 281.6 230 59.6
MELO3C019797.2 Cucumis melo HOM05D003576 ORTHO05D004124 1.3e-73 281.2 194 66.5
SHI19520 Sapria himalayana HOM05D003576 ORTHO05D004124 4.6e-71 272.7 261 52.9
BcaC04g19104 Brassica carinata HOM05D003576 ORTHO05D004124 7.9e-71 271.9 263 53.2
Duzib114G0196 Durio zibethinus HOM05D003576 ORTHO05D004124 2.0e-69 267.3 266 51.9
BcaB06g27496 Brassica carinata HOM05D003576 ORTHO05D004124 1.3e-68 264.6 238 53.4
BraA04t16996Z Brassica rapa HOM05D003576 ORTHO05D004124 2.8e-68 263.5 255 48.2
BraA04t16999Z Brassica rapa HOM05D003576 ORTHO05D004124 3.7e-68 263.1 257 49.0
BraA04t16993Z Brassica rapa HOM05D003576 ORTHO05D004124 8.2e-68 261.9 257 48.2
A04p13360 Brassica napus HOM05D003576 ORTHO05D004124 1.1e-67 261.5 255 48.2
C04p47110 Brassica napus HOM05D003576 ORTHO05D004124 2.4e-67 260.4 237 51.9
BraA04t16997Z Brassica rapa HOM05D003576 ORTHO05D004124 9.1e-67 258.5 259 48.6
A04p13340 Brassica napus HOM05D003576 ORTHO05D004124 1.5e-66 257.7 255 47.8
A04p13380 Brassica napus HOM05D003576 ORTHO05D004124 1.5e-66 257.7 255 47.8
A04p13410 Brassica napus HOM05D003576 ORTHO05D004124 1.5e-66 257.7 255 47.8
BolC4t26305H Brassica oleracea HOM05D003576 ORTHO05D004124 4.5e-66 256.1 237 51.1
BolC4t26310H Brassica oleracea HOM05D003576 ORTHO05D004124 4.5e-66 256.1 237 51.1
BraA04t16991Z Brassica rapa HOM05D003576 ORTHO05D004124 1.4e-64 251.1 271 45.4
Haze_16891 Corylus avellana HOM05D003576 ORTHO05D004124 1.9e-64 250.8 293 46.1
TAR636G0323 Trochodendron aralioides HOM05D003576 ORTHO05D004124 1.2e-63 248.1 222 55.0
Cpa.g.sc53.83 Carica papaya HOM05D003576 ORTHO05D004124 6.7e-62 242.3 296 43.9
BcaB06g27493 Brassica carinata HOM05D003576 ORTHO05D004124 2.6e-61 240.4 238 50.0
Ah.10g032640 Amaranthus hybridus HOM05D003576 ORTHO05D004124 7.4e-61 238.8 280 44.6
Zm00001eb290030 Zea mays HOM05D003576 ORTHO05D004124 7.7e-58 228.8 151 70.2
Zm00001eb366000 Zea mays HOM05D003576 ORTHO05D004124 3.2e-56 223.4 151 69.5
CDE03G0119 Ceratophyllum demersum HOM05D003576 ORTHO05D004124 3.6e-55 219.9 142 71.1
BcaB06g27489 Brassica carinata HOM05D003576 ORTHO05D004124 1.0e-54 218.4 220 51.4
CBR_g39890 Chara braunii HOM05D003576 ORTHO05D004124 3.0e-54 216.9 180 56.7
BcaB06g27491 Brassica carinata HOM05D003576 ORTHO05D004124 7.5e-53 212.2 179 54.2
Cfa023847 Carpinus fangiana HOM05D003576 ORTHO05D004124 3.5e-50 203.4 268 39.6
FAN15G1487 Fragaria x ananassa HOM05D003576 ORTHO05D004124 7.7e-50 202.2 155 62.6
MCO14G142 Micromonas commoda HOM05D003576 ORTHO05D004124 1.0e-49 201.8 248 42.7
Sp7g03020 Schrenkiella parvula HOM05D003576 ORTHO05D004124 3.8e-49 199.9 255 42.7
CDE03G0459 Ceratophyllum demersum HOM05D003576 ORTHO05D004124 8.5e-49 198.7 154 64.3
PRCOL_00003742 Prasinoderma coloniale HOM05D003576 ORTHO05D004124 2.5e-48 197.2 204 45.6
Psat1g000080 Pisum sativum HOM05D003576 ORTHO05D004124 6.1e-47 192.6 216 47.2
A04p13390 Brassica napus HOM05D003576 ORTHO05D004124 1.7e-44 184.5 251 40.2
Cre07.g344850 Chlamydomonas reinhardtii HOM05D003576 ORTHO05D004124 1.7e-44 184.5 250 38.0
Ca_27771_v3 Cicer arietinum L. HOM05D003576 ORTHO05D004124 2.0e-42 177.6 184 51.1
Sp3g29060 Schrenkiella parvula HOM05D003576 ORTHO05D004124 7.7e-42 175.6 262 39.3
Ah.16g106400 Amaranthus hybridus HOM05D003576 ORTHO05D004124 1.1e-40 171.8 303 36.6
C03p07100 Brassica napus HOM05D002836 ORTHO05D003107 1.5e-40 171.4 263 37.3
BolC4t26308H Brassica oleracea HOM05D003576 ORTHO05D004124 5.5e-40 169.5 133 56.4
SEGI_06233 Sequoiadendron giganteum HOM05D003576 ORTHO05D004124 7.2e-40 169.1 297 36.7
BolC3t13209H Brassica oleracea HOM05D003576 ORTHO05D004124 4.7e-39 166.4 272 37.1
CSS0030842 Camellia sinensis var. sinensis HOM05D003576 ORTHO05D004124 4.7e-31 139.8 156 48.1
Zm00001eb305720 Zea mays HOM05D003576 ORTHO05D004124 1.5e-29 134.8 77 77.9
TAR636G2201 Trochodendron aralioides HOM05D003576 ORTHO05D004124 1.1e-27 128.6 110 58.2
Psat1g098680 Pisum sativum HOM05D003576 ORTHO05D004124 5.4e-27 126.3 124 50.8
Ca_07562_v3 Cicer arietinum L. HOM05D003576 ORTHO05D004124 2.0e-26 124.4 131 48.9
CSS0009257 Camellia sinensis var. sinensis HOM05D003576 ORTHO05D004124 1.3e-25 121.7 84 67.9
Sp7g01550 Schrenkiella parvula HOM05D003576 ORTHO05D004124 1.2e-23 115.2 237 30.4
Oeu017646.1 Olea europaea HOM05D003576 ORTHO05D004124 2.0e-21 107.8 96 52.1
AL4G23990 Arabidopsis lyrata HOM05D003576 ORTHO05D004124 2.2e-20 104.4 123 45.5
C04p47130 Brassica napus HOM05D003576 ORTHO05D004124 1.9e-19 101.3 91 48.4
CDE03G0152 Ceratophyllum demersum HOM05D003576 ORTHO05D004124 7.3e-16 89.4 94 50.0
Psat1g098640 Pisum sativum HOM05D003576 ORTHO05D004124 5.2e-14 83.2 49 73.5
Sp7g03350 Schrenkiella parvula HOM05D003576 ORTHO05D004124 7.1e-11 72.8 100 39.0
CSS0033760 Camellia sinensis var. sinensis HOM05D003576 ORTHO05D004124 3.3e-08 63.9 51 58.8
BcaNung01892 Brassica carinata HOM05D003576 ORTHO05D000199 1.2e-07 62.0 37 75.7
CSS0032612 Camellia sinensis var. sinensis HOM05D003576 ORTHO05D004124 1.2e-07 62.0 51 54.9
CSS0050114 Camellia sinensis var. sinensis HOM05D003576 ORTHO05D004124 1.2e-07 62.0 51 54.9
CSS0046774 Camellia sinensis var. sinensis HOM05D003576 ORTHO05D004124 2.8e-07 60.8 51 52.9


User provided reference genes

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