Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c24_10810 Physcomitrium patens HOM05D001879 ORTHO05D007648 0.0e+00 3356.6 1844 100.0
AagrBONN_evm.TU.Sc2ySwM_117.1790 Anthoceros agrestis HOM05D001879 ORTHO05D007648 9.1e-244 848.6 1649 40.3
Mapoly0006s0231 Marchantia polymorpha HOM05D001879 ORTHO05D007648 1.6e-240 837.8 1524 41.9
SEGI_08589 Sequoiadendron giganteum HOM05D001879 ORTHO05D007648 6.2e-184 649.8 1598 36.3
CBR_g6612 Chara braunii HOM05D001879 ORTHO05D007648 9.1e-127 459.9 1885 30.5
SMO143G0029 Selaginella moellendorffii HOM05D001879 ORTHO05D007648 1.0e-109 403.3 1094 31.9
TAR633G2582 Trochodendron aralioides HOM05D001879 ORTHO05D007648 3.9e-101 374.8 1692 27.8
Nn5g30557 Nelumbo nucifera HOM05D001879 ORTHO05D007648 9.5e-100 370.2 1703 26.8
Dinv44962 Davidia involucrata HOM05D001879 ORTHO05D007648 3.3e-92 345.1 1646 27.3
CDE06G0223 Ceratophyllum demersum HOM05D001879 ORTHO05D007648 7.8e-86 323.9 1659 25.0
Cfa013681 Carpinus fangiana HOM05D001879 ORTHO05D007648 1.1e-84 320.1 1657 26.4
MELO3C016811.2 Cucumis melo HOM05D001879 ORTHO05D007648 7.3e-76 290.8 1652 25.7
QL12p037902 Quercus lobata HOM05D001879 ORTHO05D007648 2.1e-75 289.3 1652 25.4
Sabra14G0010800 Salix brachista HOM05D001879 ORTHO05D007648 8.9e-74 283.9 1660 25.1
PGR031G1956 Punica granatum HOM05D001879 ORTHO05D007957 3.4e-73 282.0 1668 25.5
Potri.014G017000 Populus trichocarpa HOM05D001879 ORTHO05D007648 4.4e-73 281.6 1659 24.7
PSO017G6116 Papaver somniferum HOM05D001879 ORTHO05D007648 2.4e-71 275.8 1605 25.1
Lj4A759T48 Lonicera japonica HOM05D001879 ORTHO05D007648 3.2e-71 275.4 1694 24.2
CiPaw.07G175900 Carya illinoinensis HOM05D001879 ORTHO05D007648 3.9e-69 268.5 1616 25.9
CsaV3_4G034990 Cucumis sativus L. HOM05D001879 ORTHO05D007648 5.1e-69 268.1 1656 25.1
VMungo0647G0280 Vigna mungo HOM05D001879 ORTHO05D007648 1.5e-68 266.5 1670 24.0
CANSAT25G1585 Cannabis sativa HOM05D001879 ORTHO05D007648 5.6e-68 264.6 1680 24.0
Nitab4.5_0000164g0150 Nicotiana tabacum HOM05D001879 ORTHO05D007648 9.6e-68 263.8 1673 24.4
Actinidia10192 Actinidia chinensis HOM05D001879 ORTHO05D007648 2.1e-67 262.7 1666 24.7
Manes.05G181200 Manihot esculenta HOM05D001879 ORTHO05D007648 4.8e-67 261.5 1653 24.7
Sopen04g031540 Solanum pennellii HOM05D001879 ORTHO05D007648 8.1e-67 260.8 1653 24.3
MSTRG.1026 Avicennia marina HOM05D001879 ORTHO05D007648 1.8e-66 259.6 1657 24.9
TWI56G1003 Tripterygium wilfordii HOM05D001879 ORTHO05D007648 1.8e-66 259.6 1653 25.7
Sed0027780 Sechium edule HOM05D001879 ORTHO05D007648 6.9e-66 257.7 1655 24.5
ClCG05G020550 Citrullus lanatus HOM05D001879 ORTHO05D007648 1.5e-65 256.5 1668 25.5
Glyma.17G235900 Glycine max HOM05D001879 ORTHO05D007648 1.3e-64 253.4 1663 23.0
Rhsim07G0220800 Rhododendron simsii HOM05D001879 ORTHO05D007648 8.4e-64 250.8 842 27.3
arahy.Tifrunner.gnm1.ann1.6NC3R4 Arachis hypogaea HOM05D001879 ORTHO05D007648 3.2e-63 248.8 1657 25.2
arahy.Tifrunner.gnm1.ann1.0QZG7W Arachis hypogaea HOM05D001879 ORTHO05D007648 1.6e-62 246.5 1666 25.2
Atru.chr13.820 Acer truncatum HOM05D001879 ORTHO05D007648 7.8e-62 244.2 1682 24.0
Haze_22324 Corylus avellana HOM05D001879 ORTHO05D007648 7.8e-62 244.2 1604 25.3
Glyma.14G088600 Glycine max HOM05D001879 ORTHO05D007648 7.8e-62 244.2 1659 24.8
Medtr1g018350 Medicago truncatula HOM05D001879 ORTHO05D007648 7.8e-62 244.2 1657 26.0
Aqoxy5G00884 Aquilegia oxysepala HOM05D001879 ORTHO05D007648 1.0e-61 243.8 1054 27.9
Phvul.001G026900 Phaseolus vulgaris HOM05D001879 ORTHO05D007648 2.3e-61 242.7 1661 24.3
ATR0208G021 Amborella trichopoda HOM05D001879 ORTHO05D007648 3.0e-61 242.3 820 27.8
CSS0015613 Camellia sinensis var. sinensis HOM05D001879 ORTHO05D007648 3.9e-61 241.9 860 26.7
Cc10_g05690 Coffea canephora HOM05D001879 ORTHO05D007648 1.6e-59 236.5 1657 23.3
Nitab4.5_0003803g0020 Nicotiana tabacum HOM05D001879 ORTHO05D007648 2.1e-59 236.1 1676 24.2
Lalb_Chr24g0399421 Lupinus albus HOM05D001879 ORTHO05D007648 3.6e-59 235.3 1654 24.8
SGA_v2.0_scaffold238G43965 Striga asiatica HOM05D001879 ORTHO05D007648 3.6e-59 235.3 1638 23.9
SalBow7G0276 Salvia bowleyana HOM05D001879 ORTHO05D007648 4.8e-59 235.0 1661 24.7
RcHm_v2.0_Chr6g0309441 Rosa chinensis HOM05D001879 ORTHO05D007648 1.4e-58 233.4 825 27.3
DCAR_008854 Daucus carota HOM05D001879 ORTHO05D007648 2.4e-58 232.6 1693 23.2
Peaxi162Scf00081g01617 Petunia axillaris HOM05D001879 ORTHO05D007648 5.3e-58 231.5 1613 25.0
HPP92_019611 Vanilla planifolia HOM05D001879 ORTHO05D007648 5.8e-57 228.0 826 27.7
Lj5g0015061 Lotus japonicus HOM05D001879 ORTHO05D007648 8.4e-56 224.2 1649 24.3
FvH4_2g33220 Fragaria vesca HOM05D001879 ORTHO05D007648 1.1e-55 223.8 841 27.0
TPR.G3779 Trifolium pratense HOM05D001879 ORTHO05D007648 5.4e-55 221.5 1659 24.4
Prupe.1G423900 Prunus persica HOM05D001879 ORTHO05D007648 1.2e-54 220.3 827 27.0
GSVIVG01009356001 Vitis vinifera HOM05D001879 ORTHO05D007648 1.2e-54 220.3 1652 23.1
FAN20G0949 Fragaria x ananassa HOM05D001879 ORTHO05D007648 1.6e-54 219.9 839 26.5
FAN27G0954 Fragaria x ananassa HOM05D001879 ORTHO05D007648 3.0e-53 215.7 849 26.6
MD08G1086000 Malus domestica HOM05D001879 ORTHO05D007648 3.9e-53 215.3 823 26.5
EL10Ac1g02391 Beta vulgaris HOM05D001879 ORTHO05D007648 7.6e-49 201.1 812 26.0
FAN24G0874 Fragaria x ananassa HOM05D001879 ORTHO05D007648 1.0e-48 200.7 850 27.2
FAN15G3244 Fragaria x ananassa HOM05D001879 ORTHO05D007648 2.9e-48 199.1 871 24.9
Ah.05g167110 Amaranthus hybridus HOM05D001879 ORTHO05D007957 7.1e-47 194.5 815 24.4
Solyc04g077940.4 Solanum lycopersicum HOM05D001879 ORTHO05D007648 1.0e-45 190.7 1086 25.9
Gohir.D05G212700 Gossypium hirsutum HOM05D001879 ORTHO05D007648 1.5e-44 186.8 846 25.5
Gorai.009G219200 Gossypium raimondii HOM05D001879 ORTHO05D007648 3.7e-43 182.2 824 25.4
ECA247G3074 Erigeron canadensis HOM05D001879 ORTHO05D007648 4.8e-43 181.8 817 25.0
AUR62038814 Chenopodium quinoa HOM05D001879 ORTHO05D007648 1.1e-42 180.6 830 25.2
Gohir.A05G209500 Gossypium hirsutum HOM05D001879 ORTHO05D007648 1.4e-42 180.3 846 25.4
Sc15g0005720 Simmondsia chinensis HOM05D001879 ORTHO05D007648 1.8e-42 179.9 834 25.2
Ciclev10003334m.g Citrus clementina HOM05D001879 ORTHO05D007648 6.9e-42 177.9 830 25.2
Lsat_1_v5_gn_1_24340 Lactuca sativa HOM05D001879 ORTHO05D007648 1.2e-41 177.2 828 24.4
Lalb_Chr22g0355581 Lupinus albus HOM05D001879 ORTHO05D007648 2.0e-41 176.4 827 25.5
COL.COLO4_28516 Corchorus olitorius HOM05D001879 ORTHO05D007957 2.6e-41 176.0 842 24.8
Thecc.08G090000 Theobroma cacao HOM05D001879 ORTHO05D007648 7.6e-41 174.5 838 23.7
Oeu022102.3 Olea europaea HOM05D001879 ORTHO05D007648 2.5e-39 169.5 843 24.0
AUR62037434 Chenopodium quinoa HOM05D001879 ORTHO05D007648 5.5e-39 168.3 776 25.5
HanXRQChr08g0220641 Helianthus annuus HOM05D001879 ORTHO05D007648 3.0e-37 162.5 974 22.5
Cpa.g.sc142.15 Carica papaya HOM05D001879 ORTHO05D007648 9.7e-36 157.5 777 25.2
CBR_g6294 Chara braunii HOM05D001879 ORTHO05D007648 9.7e-36 157.5 1305 22.5
Os01g0765300 Oryza sativa ssp. japonica HOM05D001879 ORTHO05D007648 1.3e-35 157.1 139 51.8
Hund24034 Selenicereus undatus HOM05D001879 ORTHO05D007648 2.8e-35 156.0 140 53.6
Psat6g016280 Pisum sativum HOM05D001879 ORTHO05D007648 8.2e-35 154.5 829 25.1
Zm00001eb152180 Zea mays HOM05D001879 ORTHO05D007648 1.8e-34 153.3 940 22.4
Sp1g23980 Schrenkiella parvula HOM05D001879 ORTHO05D007648 2.4e-34 152.9 145 50.3
AT1G27750 Arabidopsis thaliana HOM05D001879 ORTHO05D007648 1.2e-33 150.6 823 22.5
BraA09t39344Z Brassica rapa HOM05D001879 ORTHO05D007648 1.2e-33 150.6 145 51.0
AL1G41280 Arabidopsis lyrata HOM05D001879 ORTHO05D007648 2.0e-33 149.8 149 51.0
A09p38350 Brassica napus HOM05D001879 ORTHO05D007648 3.4e-33 149.1 145 50.3
C05p26440 Brassica napus HOM05D001879 ORTHO05D007648 7.7e-33 147.9 145 50.3
BolC5t31365H Brassica oleracea HOM05D001879 ORTHO05D007648 7.7e-33 147.9 145 50.3
CARHR027260 Cardamine hirsuta HOM05D001879 ORTHO05D007648 1.0e-32 147.5 140 51.4
Thhalv10006638m.g Eutrema salsugineum HOM05D001879 ORTHO05D007648 2.2e-32 146.4 146 49.3
Eucgr.F02258 Eucalyptus grandis HOM05D001879 ORTHO05D007648 2.9e-32 146.0 140 48.6
vmacro22059 Vaccinium macrocarpon HOM05D001879 ORTHO05D007648 2.9e-32 146.0 149 49.0
BcaC05g26775 Brassica carinata HOM05D001879 ORTHO05D007648 3.8e-32 145.6 145 49.0
Aa31sc113G20 Aethionema arabicum HOM05D001879 ORTHO05D007648 2.5e-31 142.9 844 22.0
Carub.0001s2626 Capsella rubella HOM05D001879 ORTHO05D007648 2.5e-31 142.9 809 22.6
Os01g0765200 Oryza sativa ssp. japonica HOM05D001879 ORTHO05D007648 1.5e-28 133.7 373 27.9
SHI08394 Sapria himalayana HOM05D001879 ORTHO05D007648 1.5e-28 133.7 141 46.8
Ca_13228_v3 Cicer arietinum L. HOM05D001879 ORTHO05D007648 3.1e-26 125.9 368 31.0
SHI08393 Sapria himalayana HOM05D001879 ORTHO05D007648 1.0e-24 120.9 249 29.7
TAR381G0870 Trochodendron aralioides HOM05D001879 ORTHO05D007648 2.9e-24 119.4 322 28.3
Ca_14462_v3 Cicer arietinum L. HOM05D001879 ORTHO05D000002 5.5e-23 115.2 241 33.2
RcHm_v2.0_Chr6g0309451 Rosa chinensis HOM05D001879 ORTHO05D007648 1.8e-21 110.2 96 55.2
Cpa.g.sc142.16 Carica papaya HOM05D001879 ORTHO05D007648 1.3e-16 94.0 74 56.8
Cfa015194 Carpinus fangiana HOM05D002300 ORTHO05D002340 5.0e-16 92.0 342 28.1
Ca_22944_v3 Cicer arietinum L. HOM05D001879 ORTHO05D007648 5.0e-16 92.0 177 31.6
CBR_g19751 Chara braunii HOM05D002300 ORTHO05D002340 3.2e-15 89.4 344 27.3
CANSAT78G0002 Cannabis sativa HOM05D002300 ORTHO05D002340 5.5e-15 88.6 366 27.9
Ca_13223_v3 Cicer arietinum L. HOM05D001879 ORTHO05D007648 5.5e-15 88.6 444 26.8
QL10p050788 Quercus lobata HOM05D002300 ORTHO05D002340 5.5e-15 88.6 342 27.8
Haze_01461 Corylus avellana HOM05D002300 ORTHO05D002340 2.7e-14 86.3 346 27.7
Ah.13g073790 Amaranthus hybridus HOM05D002300 ORTHO05D002340 3.0e-13 82.8 468 23.5
Psat7g209640 Pisum sativum HOM05D002300 ORTHO05D002340 4.4e-12 79.0 338 26.0
Pp3c11_21890 Physcomitrium patens HOM05D002300 ORTHO05D002340 5.7e-12 78.6 359 24.8
Mapoly0125s0028 Marchantia polymorpha HOM05D002300 ORTHO05D002340 2.2e-11 76.6 345 25.2
Manes.04G039300 Manihot esculenta HOM05D002300 ORTHO05D002340 3.7e-11 75.9 343 25.7
MSTRG.9753 Avicennia marina HOM05D002300 ORTHO05D002340 6.3e-11 75.1 340 24.4
Cre09.g398030 Chlamydomonas reinhardtii HOM05D001879 ORTHO05D007648 5.3e-10 72.0 155 31.6
Glyma.12G051000 Glycine max HOM05D002300 ORTHO05D002340 7.0e-10 71.6 345 25.2
unitig_0.g2401 Utricularia gibba HOM05D002300 ORTHO05D002340 9.1e-10 71.2 279 26.2
Cc03_g12090 Coffea canephora HOM05D002300 ORTHO05D002340 1.2e-09 70.9 312 24.7
Ca_31153_v3 Cicer arietinum L. HOM05D001879 ORTHO05D009627 2.0e-09 70.1 82 43.9
Lj6A86G18 Lonicera japonica HOM05D002300 ORTHO05D002340 4.5e-09 68.9 248 27.0
THA.LOC104803786 Tarenaya hassleriana HOM05D002300 ORTHO05D002340 1.0e-08 67.8 172 25.6
Migut.G01324 Erythranthe guttata HOM05D002300 ORTHO05D002340 1.3e-08 67.4 359 26.2
Lj6A104G19 Lonicera japonica HOM05D002300 ORTHO05D002340 2.2e-08 66.6 248 26.6
AagrBONN_evm.TU.Sc2ySwM_344.3191 Anthoceros agrestis HOM05D002300 ORTHO05D002340 2.9e-08 66.2 263 25.9
Sed0001804 Sechium edule HOM05D002300 ORTHO05D002340 5.0e-08 65.5 294 23.5
unitig_52.g17684 Utricularia gibba HOM05D002300 ORTHO05D002340 8.5e-08 64.7 306 25.2
Glyma.13G345300 Glycine max HOM05D002300 ORTHO05D002340 1.1e-07 64.3 271 24.7
Medtr4g068120 Medicago truncatula HOM05D002300 ORTHO05D002340 1.1e-07 64.3 346 25.1
Ca_20799_v3 Cicer arietinum L. HOM05D002300 ORTHO05D002340 1.5e-07 63.9 353 24.6
arahy.Tifrunner.gnm1.ann1.L2JJZ6 Arachis hypogaea HOM05D002300 ORTHO05D002340 1.9e-07 63.5 326 24.2
Cpa.g.sc9.316 Carica papaya HOM05D002300 ORTHO05D002340 1.9e-07 63.5 355 23.9
arahy.Tifrunner.gnm1.ann1.RX7M1F Arachis hypogaea HOM05D002300 ORTHO05D002340 2.5e-07 63.2 326 23.9
COL.COLO4_10090 Corchorus olitorius HOM05D002300 ORTHO05D002340 4.2e-07 62.4 291 24.7
Gohir.D10G126300 Gossypium hirsutum HOM05D002300 ORTHO05D002340 4.2e-07 62.4 291 23.7
Gorai.011G139200 Gossypium raimondii HOM05D002300 ORTHO05D002340 4.2e-07 62.4 291 23.7
Gohir.A10G140500 Gossypium hirsutum HOM05D002300 ORTHO05D002340 5.5e-07 62.0 292 23.6
Rhsim06G0046700 Rhododendron simsii HOM05D000561 ORTHO05D000514 5.5e-07 62.0 157 26.8
Hund17596 Selenicereus undatus HOM05D000561 ORTHO05D000514 1.2e-06 60.8 100 29.0
Solyc06g053320.4 Solanum lycopersicum HOM05D002300 ORTHO05D002340 1.2e-06 60.8 328 24.4
Sopen06g018380 Solanum pennellii HOM05D002300 ORTHO05D002340 1.2e-06 60.8 328 24.7
HPP92_002216 Vanilla planifolia HOM05D000561 ORTHO05D000514 1.2e-06 60.8 102 31.4
Eucgr.A00103 Eucalyptus grandis HOM05D002300 ORTHO05D002340 1.6e-06 60.5 555 22.2
PGR119G1727 Punica granatum HOM05D000561 ORTHO05D000514 1.6e-06 60.5 86 33.7
Hund07519 Selenicereus undatus HOM05D000561 ORTHO05D000514 1.6e-06 60.5 93 34.4
SGA_v2.0_scaffold247G44873 Striga asiatica HOM05D000561 ORTHO05D000514 1.6e-06 60.5 115 30.4
Atru.chr4.1262 Acer truncatum HOM05D002300 ORTHO05D002340 2.1e-06 60.1 381 23.1
Aa31LG5G10410 Aethionema arabicum HOM05D000561 ORTHO05D000514 2.1e-06 60.1 78 30.8
Sc19g0002840 Simmondsia chinensis HOM05D002300 ORTHO05D002340 2.1e-06 60.1 300 24.3
AT4G27000 Arabidopsis thaliana HOM05D000561 ORTHO05D000514 2.7e-06 59.7 104 27.9
Ca_20160_v3 Cicer arietinum L. HOM05D001879 ORTHO05D009627 2.7e-06 59.7 171 31.6
Cc05_g13760 Coffea canephora HOM05D000561 ORTHO05D000514 2.7e-06 59.7 86 29.1
Mapoly0013s0011 Marchantia polymorpha HOM05D000561 ORTHO05D000514 2.7e-06 59.7 81 32.1
Actinidia26503 Actinidia chinensis HOM05D002300 ORTHO05D002340 3.6e-06 59.3 327 23.2
Lj3A34T42 Lonicera japonica HOM05D002300 ORTHO05D002340 4.7e-06 58.9 346 24.0
PGSC0003DMG400007361 Solanum tuberosum HOM05D000561 ORTHO05D000514 4.7e-06 58.9 117 28.2
TWI36G0634 Tripterygium wilfordii HOM05D000561 ORTHO05D000514 4.7e-06 58.9 92 30.4
Atru.chr3.2740 Acer truncatum HOM05D000561 ORTHO05D000514 6.1e-06 58.5 97 30.9
Pp3c12_10910 Physcomitrium patens HOM05D000561 ORTHO05D000514 6.1e-06 58.5 119 26.9
Pp3c12_10960 Physcomitrium patens HOM05D000561 ORTHO05D000514 6.1e-06 58.5 119 26.9
Hund17595 Selenicereus undatus HOM05D000561 ORTHO05D000514 6.1e-06 58.5 86 31.4
Solyc11g065880.2 Solanum lycopersicum HOM05D000561 ORTHO05D000514 6.1e-06 58.5 117 28.2
HPP92_028294 Vanilla planifolia HOM05D000561 ORTHO05D000514 6.1e-06 58.5 94 31.9
Actinidia16326 Actinidia chinensis HOM05D000561 ORTHO05D000514 8.0e-06 58.2 101 31.7
AL7G25830 Arabidopsis lyrata HOM05D000561 ORTHO05D000514 8.0e-06 58.2 104 26.9
AUR62019286 Chenopodium quinoa HOM05D000561 ORTHO05D000514 8.0e-06 58.2 92 32.6
Duzib268G0577 Durio zibethinus HOM05D002300 ORTHO05D002340 8.0e-06 58.2 316 24.4
Pp3c4_13300 Physcomitrium patens HOM05D000561 ORTHO05D000514 8.0e-06 58.2 119 26.1
TAR376G0108 Trochodendron aralioides HOM05D000561 ORTHO05D001366 8.0e-06 58.2 92 28.3


User provided reference genes

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