Gene: AT4G27000
General Information
Structural Information
- Species Arabidopsis thaliana
- Gene Identifier AT4G27000
- Transcript Identifier AT4G27000.1
- Gene Type Coding gene
- Location Chr4 : 13554983-13557763 : negative
Gene Family Information
- ID HOM05D000561
- #Genes/#Species 984/100
- Phylogenetic origin
- ID ORTHO05D000514
- #Genes/#Species 826/99
- Phylogenetic origin
Gene Duplication Information
- Block Duplication Block duplicate
Labels
Identifiers
- tid AT4G27000.1
- symbol ATRBP45C
- uniprot Q93W34
Descriptions
- Description RNA-binding (RRM/RBD/RNP motifs) family protein
- Computational description ATRBP45C; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: RNA-binding protein 45A (TAIR:AT5G54900.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
- Loading (ortholog descriptions from ath)...
Functional Annotation
Biological Process
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0006397 | IEA | GOA Database | mRNA processing | |
| GO:0051028 | ISO | PLAZA Integrative Orthology | mRNA transport | Os04g0625800 |
Molecular Function
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0008143 | ISS | Gene Ontology | poly(A) binding | 1 |
| GO:0003729 | IDA, HDA IBA | Gene Ontology | mRNA binding | 2 3 4 |
| GO:0003723 | IEA | GOA Database | RNA binding | |
| GO:0003676 | IEA | GOA Database | nucleic acid binding | |
| GO:0003676 | IEA | InterPro | nucleic acid binding | |
| GO:0005515 | ISO | PLAZA Integrative Orthology | protein binding | Os04g0625800 |
Cellular Component
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0005634 | IEA | GOA Database | nucleus | |
| GO:0005634 | ISS | Gene Ontology | nucleus | 1 |
| GO:0005829 | IDA | GOA Database | cytosol | |
| GO:0005829 | HDA IBA | Gene Ontology | cytosol | 2 5 |
| GO:0005737 | ISO | PLAZA Integrative Orthology | cytoplasm | Os04g0625800 |
Color Legend
| Experimental Evidence |
| Computational Reviewed Evidence |
| Electronic Evidence |
| Mapman id | Description |
|---|---|
| 16.8.4 | RNA processing.mRNA sequestration.mRNA-binding regulatory factor (RBP45/47) |