Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c20_17650 Physcomitrium patens HOM05D003451 ORTHO05D003918 8.6e-31 136.3 69 100.0
Pp3c11_21740 Physcomitrium patens HOM05D003451 ORTHO05D003918 3.9e-15 84.3 46 87.0
Pp3c7_3000 Physcomitrium patens HOM05D003451 ORTHO05D003918 7.3e-14 80.1 46 82.6
Mapoly0141s0030 Marchantia polymorpha HOM05D003451 ORTHO05D003918 4.5e-11 70.9 46 71.7
SEGI_06162 Sequoiadendron giganteum HOM05D003451 ORTHO05D003918 8.4e-10 66.6 45 68.9
TAR369G0018 Trochodendron aralioides HOM05D003451 ORTHO05D003918 1.9e-09 65.5 46 67.4
GSVIVG01026504001 Vitis vinifera HOM05D003451 ORTHO05D003918 7.1e-09 63.5 46 65.2
AagrBONN_evm.TU.Sc2ySwM_344.5320 Anthoceros agrestis HOM05D003451 ORTHO05D003918 1.2e-08 62.8 44 68.2
TAR623G1024 Trochodendron aralioides HOM05D003451 ORTHO05D003918 1.2e-08 62.8 46 63.0
SMO144G0212 Selaginella moellendorffii HOM05D003451 ORTHO05D003918 2.1e-08 62.0 40 70.0
PSO541G4141 Papaver somniferum HOM05D003451 ORTHO05D003918 2.7e-08 61.6 46 63.0
PSO675G7264 Papaver somniferum HOM05D003451 ORTHO05D003918 2.7e-08 61.6 46 63.0
ATR0021G055 Amborella trichopoda HOM05D003451 ORTHO05D003918 3.5e-08 61.2 44 68.2
Nn2g15160 Nelumbo nucifera HOM05D003451 ORTHO05D003918 6.0e-08 60.5 46 60.9
VMungo1215G1947 Vigna mungo HOM05D003451 ORTHO05D003918 6.0e-08 60.5 58 55.2
Aqoxy2G00229 Aquilegia oxysepala HOM05D003451 ORTHO05D003918 7.9e-08 60.1 46 58.7
AT1G51510 Arabidopsis thaliana HOM05D003451 ORTHO05D003918 7.9e-08 60.1 40 67.5
arahy.Tifrunner.gnm1.ann1.KKL1UE Arachis hypogaea HOM05D003451 ORTHO05D003918 7.9e-08 60.1 42 64.3
arahy.Tifrunner.gnm1.ann1.ZE8HJS Arachis hypogaea HOM05D003451 ORTHO05D003918 7.9e-08 60.1 42 64.3
Ca_24487_v3 Cicer arietinum L. HOM05D003451 ORTHO05D003918 7.9e-08 60.1 42 64.3
Glyma.01G227300 Glycine max HOM05D003451 ORTHO05D003918 7.9e-08 60.1 42 64.3
Glyma.11G015500 Glycine max HOM05D003451 ORTHO05D003918 7.9e-08 60.1 42 64.3
Hma1.2p1_0390F.1_g142550 Hydrangea macrophylla HOM05D003451 ORTHO05D003918 7.9e-08 60.1 46 63.0
Lalb_Chr09g0320421 Lupinus albus HOM05D003451 ORTHO05D003918 7.9e-08 60.1 42 64.3
Phvul.002G034400 Phaseolus vulgaris HOM05D003451 ORTHO05D003918 7.9e-08 60.1 42 64.3
Psat2g186200 Pisum sativum HOM05D003451 ORTHO05D003918 7.9e-08 60.1 42 64.3
PGR102G1026 Punica granatum HOM05D003451 ORTHO05D003918 7.9e-08 60.1 41 68.3
TPR.G37988 Trifolium pratense HOM05D003451 ORTHO05D003918 7.9e-08 60.1 42 64.3
CDE09G0232 Ceratophyllum demersum HOM05D003451 ORTHO05D003918 1.0e-07 59.7 46 60.9
Rhsim01G0192600 Rhododendron simsii HOM05D003451 ORTHO05D003918 1.0e-07 59.7 46 60.9
Solyc06g065470.4 Solanum lycopersicum HOM05D003451 ORTHO05D003918 1.0e-07 59.7 46 60.9
CARHR041670 Cardamine hirsuta HOM05D003451 ORTHO05D003918 1.3e-07 59.3 40 70.0
CBR_g6624 Chara braunii HOM05D003451 ORTHO05D003918 1.3e-07 59.3 41 68.3
DCAR_019964 Daucus carota HOM05D003451 ORTHO05D003918 1.3e-07 59.3 45 62.2
Nn7g36360 Nelumbo nucifera HOM05D003451 ORTHO05D003918 1.3e-07 59.3 46 60.9
vmacro04126 Vaccinium macrocarpon HOM05D003451 ORTHO05D003918 1.3e-07 59.3 68 51.5
Actinidia11670 Actinidia chinensis HOM05D003451 ORTHO05D003918 1.8e-07 58.9 46 60.9
MSTRG.17605 Avicennia marina HOM05D003451 ORTHO05D003918 1.8e-07 58.9 46 58.7
CSS0013826 Camellia sinensis var. sinensis HOM05D003451 ORTHO05D003918 1.8e-07 58.9 46 60.9
Carub.0001s4036 Capsella rubella HOM05D003451 ORTHO05D003918 1.8e-07 58.9 41 63.4
Os05g0140500 Oryza sativa ssp. japonica HOM05D003451 ORTHO05D003918 1.8e-07 58.9 46 58.7
SalBow1G0548 Salvia bowleyana HOM05D003451 ORTHO05D003918 1.8e-07 58.9 46 58.7
SalBow1G0865 Salvia bowleyana HOM05D003451 ORTHO05D003918 1.8e-07 58.9 46 58.7
SalBow1G4695 Salvia bowleyana HOM05D003451 ORTHO05D003918 1.8e-07 58.9 46 58.7
SalBow6G3934 Salvia bowleyana HOM05D003451 ORTHO05D003918 1.8e-07 58.9 46 58.7
HanXRQChr13g0401231 Helianthus annuus HOM05D003451 ORTHO05D003918 2.3e-07 58.5 45 60.0
Lalb_Chr16g0376831 Lupinus albus HOM05D003451 ORTHO05D003918 2.3e-07 58.5 42 59.5
Medtr5g008890 Medicago truncatula HOM05D003451 ORTHO05D003918 2.3e-07 58.5 42 64.3
QL01p004066 Quercus lobata HOM05D003451 ORTHO05D003918 2.3e-07 58.5 39 71.8
Actinidia06925 Actinidia chinensis HOM05D003451 ORTHO05D003918 3.0e-07 58.2 46 58.7
CSS0021964 Camellia sinensis var. sinensis HOM05D003451 ORTHO05D003918 3.0e-07 58.2 46 58.7
CANSAT54G1907 Cannabis sativa HOM05D003451 ORTHO05D003918 3.0e-07 58.2 39 69.2
Lsat_1_v5_gn_6_25861 Lactuca sativa HOM05D003451 ORTHO05D003918 3.0e-07 58.2 45 57.8
LjContig00222g0014229 Lotus japonicus HOM05D003451 ORTHO05D003918 3.0e-07 58.2 42 61.9
Sopen06g023960 Solanum pennellii HOM05D003451 ORTHO05D003918 3.0e-07 58.2 45 60.0
PGSC0003DMG400026119 Solanum tuberosum HOM05D003451 ORTHO05D003918 3.0e-07 58.2 45 60.0
unitig_699.g19138 Utricularia gibba HOM05D003451 ORTHO05D003918 3.0e-07 58.2 46 58.7
BcaC08g43919 Brassica carinata HOM05D003451 ORTHO05D003918 3.9e-07 57.8 40 65.0
C06p13130 Brassica napus HOM05D003451 ORTHO05D003918 3.9e-07 57.8 40 65.0
BolC6t36469H Brassica oleracea HOM05D003451 ORTHO05D003918 3.9e-07 57.8 40 65.0
Eucgr.J00743 Eucalyptus grandis HOM05D003451 ORTHO05D003918 3.9e-07 57.8 40 67.5
THA.LOC104816872 Tarenaya hassleriana HOM05D003451 ORTHO05D003918 3.9e-07 57.8 40 65.0
THA.LOC104817916 Tarenaya hassleriana HOM05D003451 ORTHO05D003918 3.9e-07 57.8 40 65.0
HPP92_003156 Vanilla planifolia HOM05D003451 ORTHO05D003918 3.9e-07 57.8 46 58.7
Atru.chr3.2648 Acer truncatum HOM05D003451 ORTHO05D003918 5.1e-07 57.4 40 67.5
BcaB02g11254 Brassica carinata HOM05D003451 ORTHO05D003918 5.1e-07 57.4 40 67.5
Gohir.A05G073100 Gossypium hirsutum HOM05D003451 ORTHO05D003918 5.1e-07 57.4 40 65.0
Manes.14G004400 Manihot esculenta HOM05D003451 ORTHO05D003918 5.1e-07 57.4 46 56.5
Sp1g38150 Schrenkiella parvula HOM05D003451 ORTHO05D003918 5.1e-07 57.4 40 65.0
BcaC08g43315 Brassica carinata HOM05D003451 ORTHO05D003918 6.7e-07 57.0 40 65.0
A06p02460 Brassica napus HOM05D003451 ORTHO05D003918 6.7e-07 57.0 40 65.0
C06p06630 Brassica napus HOM05D003451 ORTHO05D003918 6.7e-07 57.0 40 65.0
BolC6t35776H Brassica oleracea HOM05D003451 ORTHO05D003918 6.7e-07 57.0 40 65.0
BraA06t23452Z Brassica rapa HOM05D003451 ORTHO05D003918 6.7e-07 57.0 40 65.0
PSO339G2767 Papaver somniferum HOM05D003451 ORTHO05D003918 6.7e-07 57.0 45 60.0
MSTRG.12458 Avicennia marina HOM05D003451 ORTHO05D003918 8.7e-07 56.6 46 58.7
A05p19520 Brassica napus HOM05D003451 ORTHO05D003918 8.7e-07 56.6 40 62.5
Ciclev10016808m.g Citrus clementina HOM05D003451 ORTHO05D003918 8.7e-07 56.6 40 65.0
Thhalv10011787m.g Eutrema salsugineum HOM05D003451 ORTHO05D003918 8.7e-07 56.6 40 62.5
Lsat_1_v5_gn_1_49181 Lactuca sativa HOM05D003451 ORTHO05D003918 8.7e-07 56.6 45 57.8
Oeu001483.1 Olea europaea HOM05D003451 ORTHO05D003918 8.7e-07 56.6 46 58.7
PSO384G4628 Papaver somniferum HOM05D003451 ORTHO05D003918 8.7e-07 56.6 45 60.0
Peaxi162Scf00268g01431 Petunia axillaris HOM05D003451 ORTHO05D003918 8.7e-07 56.6 45 60.0
Sc09g0000810 Simmondsia chinensis HOM05D003451 ORTHO05D003918 8.7e-07 56.6 40 67.5
TWI32G0677 Tripterygium wilfordii HOM05D003451 ORTHO05D003918 8.7e-07 56.6 40 67.5
TWI60G0042 Tripterygium wilfordii HOM05D003451 ORTHO05D003918 8.7e-07 56.6 40 67.5
Aa31LG10G3250 Aethionema arabicum HOM05D003451 ORTHO05D003918 1.1e-06 56.2 40 62.5
BcaB07g33596 Brassica carinata HOM05D003451 ORTHO05D003918 1.1e-06 56.2 40 62.5
CSS0003600 Camellia sinensis var. sinensis HOM05D003451 ORTHO05D003918 1.1e-06 56.2 46 58.7
CSS0014106 Camellia sinensis var. sinensis HOM05D003451 ORTHO05D003918 1.1e-06 56.2 63 49.2
CSS0015848 Camellia sinensis var. sinensis HOM05D003451 ORTHO05D003918 1.1e-06 56.2 63 47.6
CiPaw.13G154800 Carya illinoinensis HOM05D003451 ORTHO05D003918 1.1e-06 56.2 39 66.7
CiPaw.14G116900 Carya illinoinensis HOM05D003451 ORTHO05D003918 1.1e-06 56.2 39 69.2
AL1G59400 Arabidopsis lyrata HOM05D003451 ORTHO05D003918 1.5e-06 55.8 40 65.0
BraA05t20856Z Brassica rapa HOM05D003451 ORTHO05D003918 1.5e-06 55.8 40 62.5
ECA233G6223 Erigeron canadensis HOM05D003451 ORTHO05D003918 1.5e-06 55.8 45 57.8
TWI34G0098 Tripterygium wilfordii HOM05D003451 ORTHO05D003918 1.5e-06 55.8 40 65.0
unitig_27.g25002 Utricularia gibba HOM05D003451 ORTHO05D003918 1.5e-06 55.8 45 57.8
Zm00001eb062000 Zea mays HOM05D003451 ORTHO05D003918 1.5e-06 55.8 41 63.4
BcaC01g01279 Brassica carinata HOM05D003451 ORTHO05D003918 1.9e-06 55.5 40 62.5
A08p02680 Brassica napus HOM05D003451 ORTHO05D003918 1.9e-06 55.5 40 62.5
C03p90160 Brassica napus HOM05D003451 ORTHO05D003918 1.9e-06 55.5 40 62.5
BolC3t21338H Brassica oleracea HOM05D003451 ORTHO05D003918 1.9e-06 55.5 40 62.5
BraA08t32308Z Brassica rapa HOM05D003451 ORTHO05D003918 1.9e-06 55.5 40 62.5
Cre12.g526750 Chlamydomonas reinhardtii HOM05D003451 ORTHO05D003918 1.9e-06 55.5 36 72.2
Gohir.A09G110960 Gossypium hirsutum HOM05D003451 ORTHO05D003918 1.9e-06 55.5 40 62.5
HanXRQChr01g0029351 Helianthus annuus HOM05D003451 ORTHO05D003918 1.9e-06 55.5 44 56.8
Lj2A624G28 Lonicera japonica HOM05D003451 ORTHO05D003918 1.9e-06 55.5 67 50.7
Lj5C793G3 Lonicera japonica HOM05D003451 ORTHO05D003918 1.9e-06 55.5 67 50.7
Manes.06G162200 Manihot esculenta HOM05D003451 ORTHO05D003918 1.9e-06 55.5 46 54.3
THA.LOC104811180 Tarenaya hassleriana HOM05D003451 ORTHO05D003918 1.9e-06 55.5 40 60.0
Cpa.g.sc84.26 Carica papaya HOM05D003451 ORTHO05D003918 2.5e-06 55.1 62 53.2
Cfa009811 Carpinus fangiana HOM05D003451 ORTHO05D003918 2.5e-06 55.1 39 64.1
ClCG03G013000 Citrullus lanatus HOM05D003451 ORTHO05D003918 2.5e-06 55.1 45 55.6
Haze_23175 Corylus avellana HOM05D003451 ORTHO05D003918 2.5e-06 55.1 39 64.1
MELO3C015160.2 Cucumis melo HOM05D003451 ORTHO05D003918 2.5e-06 55.1 45 55.6
CsaV3_1G043070 Cucumis sativus L. HOM05D003451 ORTHO05D003918 2.5e-06 55.1 45 55.6
Migut.N02344 Erythranthe guttata HOM05D003451 ORTHO05D003918 2.5e-06 55.1 46 56.5
Gohir.D09G107600 Gossypium hirsutum HOM05D003451 ORTHO05D003918 2.5e-06 55.1 40 62.5
Gorai.006G125200 Gossypium raimondii HOM05D003451 ORTHO05D003918 2.5e-06 55.1 40 62.5
Nitab4.5_0003158g0010 Nicotiana tabacum HOM05D003451 ORTHO05D003918 2.5e-06 55.1 45 57.8
Sed0009927 Sechium edule HOM05D003451 ORTHO05D003918 2.5e-06 55.1 45 55.6
Dinv22160 Davidia involucrata HOM05D003451 ORTHO05D003918 3.3e-06 54.7 46 58.7
Dinv36234 Davidia involucrata HOM05D003451 ORTHO05D003918 3.3e-06 54.7 46 54.3
Gohir.D05G076000 Gossypium hirsutum HOM05D003451 ORTHO05D003918 3.3e-06 54.7 40 62.5
Gorai.009G077300 Gossypium raimondii HOM05D003451 ORTHO05D003918 3.3e-06 54.7 40 62.5
Os03g0809900 Oryza sativa ssp. japonica HOM05D003451 ORTHO05D003918 3.3e-06 54.7 41 61.0
Prupe.4G255000 Prunus persica HOM05D003451 ORTHO05D003918 3.3e-06 54.7 39 64.1
Hund07469 Selenicereus undatus HOM05D003451 ORTHO05D003918 3.3e-06 54.7 54 50.0
Thecc.09G245200 Theobroma cacao HOM05D003451 ORTHO05D003918 3.3e-06 54.7 40 62.5
CSS0000811 Camellia sinensis var. sinensis HOM05D003451 ORTHO05D003918 4.3e-06 54.3 44 59.1
CSS0010909 Camellia sinensis var. sinensis HOM05D003451 ORTHO05D003918 4.3e-06 54.3 46 56.5
CSS0020415 Camellia sinensis var. sinensis HOM05D003451 ORTHO05D003918 4.3e-06 54.3 62 46.8
Migut.D00628 Erythranthe guttata HOM05D003451 ORTHO05D003918 4.3e-06 54.3 46 54.3
SGA_v2.0_scaffold3G01477 Striga asiatica HOM05D003451 ORTHO05D003918 4.3e-06 54.3 68 47.1
HanXRQChr11g0351591 Helianthus annuus HOM05D003451 ORTHO05D003918 5.6e-06 53.9 40 60.0
BcaB04g17193 Brassica carinata HOM05D003451 ORTHO05D003918 7.4e-06 53.5 40 60.0
Dinv39631 Davidia involucrata HOM05D003451 ORTHO05D003918 7.4e-06 53.5 46 56.5
Duzib168G0102 Durio zibethinus HOM05D003451 ORTHO05D003918 7.4e-06 53.5 40 60.0
Gohir.A13G218200 Gossypium hirsutum HOM05D003451 ORTHO05D003918 7.4e-06 53.5 40 60.0
Gohir.D13G221900 Gossypium hirsutum HOM05D003451 ORTHO05D003918 7.4e-06 53.5 40 60.0
Gorai.013G253000 Gossypium raimondii HOM05D003451 ORTHO05D003918 7.4e-06 53.5 40 60.0
Cc01_g05030 Coffea canephora HOM05D003451 ORTHO05D003918 9.6e-06 53.1 46 52.2
COL.COLO4_37539 Corchorus olitorius HOM05D003451 ORTHO05D003918 9.6e-06 53.1 40 60.0
Duzib170G0373 Durio zibethinus HOM05D003451 ORTHO05D003918 9.6e-06 53.1 40 57.5
Lj7A514T32 Lonicera japonica HOM05D003451 ORTHO05D003918 9.6e-06 53.1 67 49.3
Nitab4.5_0000159g0090 Nicotiana tabacum HOM05D003451 ORTHO05D003918 9.6e-06 53.1 45 57.8
Nitab4.5_0000531g0010 Nicotiana tabacum HOM05D003451 ORTHO05D003918 9.6e-06 53.1 45 57.8


User provided reference genes

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