Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c19_1080 Physcomitrium patens HOM05D000216 ORTHO05D001131 1.0e-21 105.9 57 100.0
Gohir.D08G095620 Gossypium hirsutum HOM05D000216 ORTHO05D001131 6.5e-08 60.1 55 61.8
Gorai.008G086500 Gossypium raimondii HOM05D000216 ORTHO05D001131 6.5e-08 60.1 55 60.0
BcaC09g49582 Brassica carinata HOM05D000216 ORTHO05D001131 8.5e-08 59.7 48 64.6
BNapus_Darmor_BZH_scaffold_234p00040 Brassica napus HOM05D000216 ORTHO05D001131 8.5e-08 59.7 48 64.6
BolSC28t60417H Brassica oleracea HOM05D000216 ORTHO05D001131 8.5e-08 59.7 48 64.6
Gohir.D12G077902 Gossypium hirsutum HOM05D000216 ORTHO05D001131 8.5e-08 59.7 55 60.0
RhsimPtG0004700 Rhododendron simsii HOM05D000216 ORTHO05D001131 1.4e-07 58.9 55 58.2
AL2G20930 Arabidopsis lyrata HOM05D000216 ORTHO05D001131 2.5e-07 58.2 55 58.2
ATCG00190 Arabidopsis thaliana HOM05D000216 ORTHO05D001131 2.5e-07 58.2 55 58.2
BcaC05g28800 Brassica carinata HOM05D000216 ORTHO05D001131 2.5e-07 58.2 55 58.2
BNapus_Darmor_BZH_scaffold_253p00080 Brassica napus HOM05D000216 ORTHO05D001131 2.5e-07 58.2 55 58.2
BraSC151t45704Z Brassica rapa HOM05D000216 ORTHO05D001131 2.5e-07 58.2 55 58.2
CARHR281930 Cardamine hirsuta HOM05D000216 ORTHO05D001131 2.5e-07 58.2 55 58.2
Gohir.A04G065185 Gossypium hirsutum HOM05D000216 ORTHO05D001131 2.5e-07 58.2 55 58.2
Gohir.D01G029500 Gossypium hirsutum HOM05D000216 ORTHO05D001131 2.5e-07 58.2 55 58.2
Gorai.005G167700 Gossypium raimondii HOM05D000216 ORTHO05D001131 2.5e-07 58.2 55 58.2
Mapoly0091s0005 Marchantia polymorpha HOM05D000216 ORTHO05D001131 2.5e-07 58.2 56 57.1
ClCG07G006760 Citrullus lanatus HOM05D000216 ORTHO05D001131 4.2e-07 57.4 54 57.4
Nn082s42674 Nelumbo nucifera HOM05D000216 ORTHO05D001131 4.2e-07 57.4 55 56.4
PSO548G0026 Papaver somniferum HOM05D000216 ORTHO05D001131 4.2e-07 57.4 55 56.4
CAN.G1738.7 Capsicum annuum HOM05D000216 ORTHO05D001131 5.5e-07 57.0 55 56.4
CAN.G511.6 Capsicum annuum HOM05D000216 ORTHO05D001131 5.5e-07 57.0 55 56.4
MELO3C027101.2 Cucumis melo HOM05D000216 ORTHO05D001131 5.5e-07 57.0 55 56.4
DCAR_010289 Daucus carota HOM05D000216 ORTHO05D001131 5.5e-07 57.0 55 56.4
DCAR_010535 Daucus carota HOM05D000216 ORTHO05D001131 5.5e-07 57.0 55 56.4
DCAR_032476 Daucus carota HOM05D000216 ORTHO05D001131 5.5e-07 57.0 55 56.4
Migut.D01417 Erythranthe guttata HOM05D000216 ORTHO05D001131 5.5e-07 57.0 55 56.4
Manes.04G060056 Manihot esculenta HOM05D000216 ORTHO05D001131 5.5e-07 57.0 55 56.4
PGR111G0080 Punica granatum HOM05D000216 ORTHO05D001131 5.5e-07 57.0 55 56.4
RcHm_v2.0_CPg0502401 Rosa chinensis HOM05D000216 ORTHO05D001131 5.5e-07 57.0 55 56.4
SalBow1G4778 Salvia bowleyana HOM05D000216 ORTHO05D001131 5.5e-07 57.0 55 56.4
Sed0002232 Sechium edule HOM05D000216 ORTHO05D001131 5.5e-07 57.0 55 56.4
Sed0007596 Sechium edule HOM05D000216 ORTHO05D001131 5.5e-07 57.0 55 56.4
Sed0025233 Sechium edule HOM05D000216 ORTHO05D001131 5.5e-07 57.0 55 56.4
Solyc00g500053.1 Solanum lycopersicum HOM05D000216 ORTHO05D001131 5.5e-07 57.0 55 56.4
PGSC0003DMG401017663 Solanum tuberosum HOM05D000216 ORTHO05D001131 5.5e-07 57.0 55 56.4
PGSC0003DMG402017663 Solanum tuberosum HOM05D000216 ORTHO05D001131 5.5e-07 57.0 55 56.4
unitig_91.g26498 Utricularia gibba HOM05D000216 ORTHO05D001131 5.5e-07 57.0 55 56.4
Ca_05611_v3 Cicer arietinum L. HOM05D000216 ORTHO05D001131 7.2e-07 56.6 55 54.5
COL.COLO4_00815 Corchorus olitorius HOM05D000216 ORTHO05D001131 7.2e-07 56.6 55 56.4
COL.COLO4_01673 Corchorus olitorius HOM05D000216 ORTHO05D001131 7.2e-07 56.6 55 56.4
Nitab4.5_0000172g0250 Nicotiana tabacum HOM05D000216 ORTHO05D001131 7.2e-07 56.6 55 56.4
Gorai.004G101400 Gossypium raimondii HOM05D000216 ORTHO05D001131 9.4e-07 56.2 55 56.4
Hma1.2p1_0191F.1_g083380 Hydrangea macrophylla HOM05D000216 ORTHO05D001131 9.4e-07 56.2 55 54.5
Lalb_Chr09g0335411 Lupinus albus HOM05D000216 ORTHO05D001131 9.4e-07 56.2 56 55.4
Medtr4g051130 Medicago truncatula HOM05D000216 ORTHO05D001131 1.2e-06 55.8 56 53.6
Psat0s6357g0040 Pisum sativum HOM05D000216 ORTHO05D001131 1.2e-06 55.8 55 54.5
Psat6g035440 Pisum sativum HOM05D000216 ORTHO05D001131 1.2e-06 55.8 55 54.5
Psat7g026840 Pisum sativum HOM05D000216 ORTHO05D001131 1.2e-06 55.8 55 54.5
Psat7g176880 Pisum sativum HOM05D000216 ORTHO05D001131 1.2e-06 55.8 55 54.5
Potri.013G142232 Populus trichocarpa HOM05D000216 ORTHO05D001131 1.2e-06 55.8 55 56.4
QL11p015550 Quercus lobata HOM05D000216 ORTHO05D001131 1.2e-06 55.8 55 52.7
Sabra11G0094200 Salix brachista HOM05D000216 ORTHO05D001131 1.2e-06 55.8 55 56.4
Sabra11G0094400 Salix brachista HOM05D000216 ORTHO05D001131 1.2e-06 55.8 55 56.4
Sabra11G0094700 Salix brachista HOM05D000216 ORTHO05D001131 1.2e-06 55.8 55 56.4
SabraPtG0001100 Salix brachista HOM05D000216 ORTHO05D001131 1.2e-06 55.8 55 56.4
AUR62041878 Chenopodium quinoa HOM05D000216 ORTHO05D001131 1.6e-06 55.5 55 54.5
Ah.06g193280 Amaranthus hybridus HOM05D000216 ORTHO05D001131 2.1e-06 55.1 55 54.5
Ah.10g027590 Amaranthus hybridus HOM05D000216 ORTHO05D001131 2.1e-06 55.1 55 54.5
arahy.Tifrunner.gnm1.ann1.MIWC4Y Arachis hypogaea HOM05D000216 ORTHO05D001131 2.1e-06 55.1 55 54.5
arahy.Tifrunner.gnm1.ann1.WNC9JI Arachis hypogaea HOM05D000216 ORTHO05D001131 2.1e-06 55.1 55 54.5
arahy.Tifrunner.gnm1.ann1.XEUA7Q Arachis hypogaea HOM05D000216 ORTHO05D001131 2.1e-06 55.1 55 54.5
EL10As12g24016 Beta vulgaris HOM05D000216 ORTHO05D001131 2.1e-06 55.1 55 54.5
Gohir.D02G109701 Gossypium hirsutum HOM05D000216 ORTHO05D001131 2.1e-06 55.1 55 56.4
Lj2A1224G98 Lonicera japonica HOM05D000216 ORTHO05D001131 2.1e-06 55.1 55 52.7
Lj2A1227T104 Lonicera japonica HOM05D000216 ORTHO05D001131 2.1e-06 55.1 55 52.7
Lj2A1238G119 Lonicera japonica HOM05D000216 ORTHO05D001131 2.1e-06 55.1 55 52.7
Lj2C1237G9 Lonicera japonica HOM05D000216 ORTHO05D001131 2.1e-06 55.1 55 52.7
Psat0s1150g0040 Pisum sativum HOM05D000216 ORTHO05D001131 2.1e-06 55.1 55 54.5
Psat3g095080 Pisum sativum HOM05D000216 ORTHO05D001131 2.1e-06 55.1 55 52.7
Sc13g0006970 Simmondsia chinensis HOM05D000216 ORTHO05D001131 2.1e-06 55.1 55 54.5
Sc15g0001760 Simmondsia chinensis HOM05D000216 ORTHO05D001131 2.1e-06 55.1 55 54.5
Sc25g0001960 Simmondsia chinensis HOM05D000216 ORTHO05D001131 2.1e-06 55.1 55 54.5
HPP92_028444 Vanilla planifolia HOM05D000216 ORTHO05D001131 2.1e-06 55.1 56 51.8
VMungo1015G0001 Vigna mungo HOM05D000216 ORTHO05D001131 2.1e-06 55.1 55 56.4
vmacro22402 Vaccinium macrocarpon HOM05D000216 ORTHO05D001131 2.7e-06 54.7 55 52.7
ATR0227G001 Amborella trichopoda HOM05D000216 ORTHO05D001131 4.7e-06 53.9 55 52.7
CAN.G939.16 Capsicum annuum HOM05D000216 ORTHO05D001131 4.7e-06 53.9 55 54.5
ClCG11G013030 Citrullus lanatus HOM05D000216 ORTHO05D001131 4.7e-06 53.9 54 53.7
LjContig00318g0016482 Lotus japonicus HOM05D000216 ORTHO05D001131 4.7e-06 53.9 55 52.7
Psat1g084360 Pisum sativum HOM05D000216 ORTHO05D001131 4.7e-06 53.9 55 52.7
CAN.G1648.8 Capsicum annuum HOM05D000216 ORTHO05D001131 6.1e-06 53.5 53 54.7
CsaV3_UNG208340 Cucumis sativus L. HOM05D000216 ORTHO05D001131 6.1e-06 53.5 55 52.7
Medtr0002s0510 Medicago truncatula HOM05D000216 ORTHO05D001131 6.1e-06 53.5 55 49.1
Solyc01g017360.3 Solanum lycopersicum HOM05D000216 ORTHO05D001131 6.1e-06 53.5 54 53.7
arahy.Tifrunner.gnm1.ann1.D45LZI Arachis hypogaea HOM05D000216 ORTHO05D001131 7.9e-06 53.1 55 50.9
Zm00001eb434940 Zea mays HOM05D000216 ORTHO05D001131 7.9e-06 53.1 55 47.3
Zm00001eb435280 Zea mays HOM05D000216 ORTHO05D001131 7.9e-06 53.1 55 47.3
Zm00001eb435760 Zea mays HOM05D000216 ORTHO05D001131 7.9e-06 53.1 55 47.3
Zm00001eb436840 Zea mays HOM05D000216 ORTHO05D001131 7.9e-06 53.1 55 47.3


User provided reference genes

Program Settings