Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c17_2620 Physcomitrium patens HOM05D003101 ORTHO05D003550 3.5e-137 492.3 385 100.0
Pp3c17_2630 Physcomitrium patens HOM05D003101 ORTHO05D003550 1.6e-134 483.4 381 99.7
Mapoly0012s0166 Marchantia polymorpha HOM05D003101 ORTHO05D003550 5.5e-34 149.4 268 43.7
AagrBONN_evm.TU.Sc2ySwM_117.2898 Anthoceros agrestis HOM05D003101 ORTHO05D003550 5.7e-31 139.4 257 46.7
Os01g0595100 Oryza sativa ssp. japonica HOM05D003101 ORTHO05D003550 2.5e-26 124.0 211 39.8
Zm00001eb357620 Zea mays HOM05D003101 ORTHO05D003550 4.7e-25 119.8 248 37.1
ATR0037G010 Amborella trichopoda HOM05D003101 ORTHO05D003550 4.4e-23 113.2 214 44.9
MBI01_g16637_MAGBIO Magnolia biondii HOM05D003101 ORTHO05D003550 5.7e-23 112.8 225 37.3
Rhsim08G0219800 Rhododendron simsii HOM05D003101 ORTHO05D003550 7.4e-23 112.5 275 35.6
SEGI_16629 Sequoiadendron giganteum HOM05D003101 ORTHO05D003550 7.4e-23 112.5 271 41.0
vmacro18925 Vaccinium macrocarpon HOM05D003101 ORTHO05D003550 1.3e-22 111.7 246 35.8
Nn8g39252 Nelumbo nucifera HOM05D003101 ORTHO05D003550 3.7e-22 110.2 203 43.8
Hund06603 Selenicereus undatus HOM05D003101 ORTHO05D003550 1.8e-21 107.8 217 36.9
Hund00605 Selenicereus undatus HOM05D003101 ORTHO05D003550 2.4e-21 107.5 221 37.6
CBR_g19411 Chara braunii HOM05D003101 ORTHO05D003550 3.1e-21 107.1 75 65.3
Nn2g11806 Nelumbo nucifera HOM05D003101 ORTHO05D003550 3.1e-21 107.1 200 42.0
HPP92_009103 Vanilla planifolia HOM05D003101 ORTHO05D003550 4.1e-21 106.7 279 37.3
THA.LOC104813563 Tarenaya hassleriana HOM05D003101 ORTHO05D003550 7.0e-21 105.9 240 34.6
Aqoxy7G01818 Aquilegia oxysepala HOM05D003101 ORTHO05D003550 9.1e-21 105.5 264 31.4
TAR624G0149 Trochodendron aralioides HOM05D003101 ORTHO05D003550 9.1e-21 105.5 282 30.5
MSTRG.4727 Avicennia marina HOM05D003101 ORTHO05D003550 3.5e-20 103.6 226 38.5
Gohir.A05G127600 Gossypium hirsutum HOM05D003101 ORTHO05D003550 4.5e-20 103.2 209 35.4
Manes.04G121800 Manihot esculenta HOM05D003101 ORTHO05D003550 4.5e-20 103.2 196 38.3
TWI75G0984 Tripterygium wilfordii HOM05D003101 ORTHO05D003550 4.5e-20 103.2 216 38.9
Gohir.D05G128500 Gossypium hirsutum HOM05D003101 ORTHO05D003550 5.9e-20 102.8 209 36.4
Phvul.005G172200 Phaseolus vulgaris HOM05D003101 ORTHO05D003550 7.7e-20 102.4 215 38.6
AUR62011620 Chenopodium quinoa HOM05D003101 ORTHO05D003550 1.0e-19 102.1 259 39.8
Gorai.009G132700 Gossypium raimondii HOM05D003101 ORTHO05D003550 1.0e-19 102.1 206 36.9
CiPaw.02G152100 Carya illinoinensis HOM05D003101 ORTHO05D003550 2.9e-19 100.5 200 38.5
TAR626G0726 Trochodendron aralioides HOM05D003101 ORTHO05D003550 2.9e-19 100.5 253 33.2
EL10Ac9g21983 Beta vulgaris HOM05D003101 ORTHO05D003550 3.8e-19 100.1 224 35.7
FAN05G5709 Fragaria x ananassa HOM05D003101 ORTHO05D003550 3.8e-19 100.1 243 39.5
Glyma.13G360400 Glycine max HOM05D003101 ORTHO05D003550 3.8e-19 100.1 221 36.7
Eucgr.F03010 Eucalyptus grandis HOM05D003101 ORTHO05D003550 5.0e-19 99.8 206 41.7
HanXRQChr10g0314941 Helianthus annuus HOM05D003101 ORTHO05D003550 5.0e-19 99.8 189 39.7
TWI18G0488 Tripterygium wilfordii HOM05D003101 ORTHO05D003550 5.0e-19 99.8 218 37.2
Lsat_1_v5_gn_5_129921 Lactuca sativa HOM05D003101 ORTHO05D003550 6.5e-19 99.4 212 40.1
Rhsim12G0197000 Rhododendron simsii HOM05D003101 ORTHO05D003550 8.5e-19 99.0 194 39.7
TAR383G0973 Trochodendron aralioides HOM05D003101 ORTHO05D003550 8.5e-19 99.0 217 37.3
Lj3g0021137 Lotus japonicus HOM05D003101 ORTHO05D003550 1.1e-18 98.6 222 37.8
Duzib192G0892 Durio zibethinus HOM05D003101 ORTHO05D003550 1.5e-18 98.2 200 37.5
Hma1.2p1_0323F.1_g125250 Hydrangea macrophylla HOM05D003101 ORTHO05D003550 1.5e-18 98.2 186 38.7
Hma1.2p1_0682F.1_g202700 Hydrangea macrophylla HOM05D003101 ORTHO05D003550 1.5e-18 98.2 251 35.9
Actinidia01797 Actinidia chinensis HOM05D003101 ORTHO05D003550 1.9e-18 97.8 247 34.8
CDE02G4492 Ceratophyllum demersum HOM05D003101 ORTHO05D003550 3.2e-18 97.1 241 33.6
CANSAT56G0412 Cannabis sativa HOM05D003101 ORTHO05D003550 4.2e-18 96.7 257 33.9
QL05p025236 Quercus lobata HOM05D003101 ORTHO05D003550 4.2e-18 96.7 234 38.0
Cfa002053 Carpinus fangiana HOM05D003101 ORTHO05D003550 5.5e-18 96.3 222 42.3
TWI12G0521 Tripterygium wilfordii HOM05D003101 ORTHO05D003550 7.2e-18 95.9 250 38.4
VMungo1080G1584 Vigna mungo HOM05D003101 ORTHO05D003550 7.2e-18 95.9 226 34.5
Solyc03g120300.3 Solanum lycopersicum HOM05D003101 ORTHO05D003550 9.4e-18 95.5 250 38.8
CiPaw.01G240300 Carya illinoinensis HOM05D003101 ORTHO05D003550 1.2e-17 95.1 247 33.2
CDE04G0005 Ceratophyllum demersum HOM05D003101 ORTHO05D003550 1.2e-17 95.1 233 34.8
Migut.I00851 Erythranthe guttata HOM05D003101 ORTHO05D003550 1.2e-17 95.1 233 38.2
Actinidia14364 Actinidia chinensis HOM05D003101 ORTHO05D003550 1.6e-17 94.7 233 36.5
Glyma.07G034600 Glycine max HOM05D003101 ORTHO05D003550 1.6e-17 94.7 223 40.4
Lalb_Chr14g0373491 Lupinus albus HOM05D003101 ORTHO05D003550 2.1e-17 94.4 257 34.2
Medtr4g011920 Medicago truncatula HOM05D003101 ORTHO05D003550 2.1e-17 94.4 213 36.2
Sopen03g039190 Solanum pennellii HOM05D003101 ORTHO05D003550 2.1e-17 94.4 249 39.4
MSTRG.11085 Avicennia marina HOM05D003101 ORTHO05D003550 2.7e-17 94.0 212 34.4
Ca_20400_v3 Cicer arietinum L. HOM05D003101 ORTHO05D003550 2.7e-17 94.0 201 38.8
Gohir.D10G072000 Gossypium hirsutum HOM05D003101 ORTHO05D003550 2.7e-17 94.0 193 36.3
Gorai.011G077400 Gossypium raimondii HOM05D003101 ORTHO05D003550 2.7e-17 94.0 193 36.3
PSO782G5747 Papaver somniferum HOM05D003101 ORTHO05D003550 2.7e-17 94.0 279 32.3
VMungo0331G1559 Vigna mungo HOM05D003101 ORTHO05D003550 2.7e-17 94.0 230 36.1
Atru.chr1.3230 Acer truncatum HOM05D003101 ORTHO05D003550 3.6e-17 93.6 254 35.8
ECA234G1424 Erigeron canadensis HOM05D003101 ORTHO05D003550 3.6e-17 93.6 201 40.3
Lj3g0018219 Lotus japonicus HOM05D003101 ORTHO05D003550 3.6e-17 93.6 87 55.2
AUR62016435 Chenopodium quinoa HOM05D003101 ORTHO05D003550 4.7e-17 93.2 277 37.5
Dinv38057 Davidia involucrata HOM05D003101 ORTHO05D003550 6.1e-17 92.8 242 35.1
Phvul.010G151300 Phaseolus vulgaris HOM05D003101 ORTHO05D003550 6.1e-17 92.8 201 36.8
Sc12g0009260 Simmondsia chinensis HOM05D003101 ORTHO05D003550 6.1e-17 92.8 242 35.1
Thecc.06G084100 Theobroma cacao HOM05D003101 ORTHO05D003550 6.1e-17 92.8 204 36.3
Gohir.A10G079500 Gossypium hirsutum HOM05D003101 ORTHO05D003550 8.0e-17 92.4 190 36.3
Prupe.3G073300 Prunus persica HOM05D003101 ORTHO05D003550 8.0e-17 92.4 203 41.9
unitig_22.g5467 Utricularia gibba HOM05D003101 ORTHO05D003550 8.0e-17 92.4 245 33.9
MELO3C023364.2 Cucumis melo HOM05D000041 ORTHO05D000061 1.0e-16 92.0 191 35.6
Nitab4.5_0003885g0080 Nicotiana tabacum HOM05D003101 ORTHO05D003550 1.0e-16 92.0 256 37.1
PGR102G1309 Punica granatum HOM05D003101 ORTHO05D003550 1.0e-16 92.0 233 38.2
BraA07t30288Z Brassica rapa HOM05D003101 ORTHO05D003550 1.4e-16 91.7 266 35.7
Psat7g253080 Pisum sativum HOM05D003101 ORTHO05D003550 1.4e-16 91.7 235 35.7
GSVIVG01017130001 Vitis vinifera HOM05D003101 ORTHO05D003550 1.4e-16 91.7 257 36.2
Glyma.08G207400 Glycine max HOM05D003101 ORTHO05D003550 1.8e-16 91.3 209 40.7
Lalb_Chr24g0395781 Lupinus albus HOM05D003101 ORTHO05D003550 1.8e-16 91.3 246 39.4
A07p26440 Brassica napus HOM05D003101 ORTHO05D003550 2.3e-16 90.9 266 35.7
Lalb_Chr22g0351191 Lupinus albus HOM05D003101 ORTHO05D003550 2.3e-16 90.9 196 34.7
Potri.001G178900 Populus trichocarpa HOM05D003101 ORTHO05D003550 2.3e-16 90.9 187 34.8
RcHm_v2.0_Chr2g0137581 Rosa chinensis HOM05D003101 ORTHO05D003550 2.3e-16 90.9 228 39.9
COL.COLO4_30344 Corchorus olitorius HOM05D003101 ORTHO05D003550 3.0e-16 90.5 189 37.0
PGSC0003DMG402002640 Solanum tuberosum HOM05D003101 ORTHO05D003550 3.0e-16 90.5 250 38.4
ClCG09G002280 Citrullus lanatus HOM05D003101 ORTHO05D003550 4.0e-16 90.1 186 33.3
Ciclev10024985m.g Citrus clementina HOM05D003101 ORTHO05D003550 4.0e-16 90.1 196 36.7
Gohir.D03G074200 Gossypium hirsutum HOM05D003101 ORTHO05D003550 5.2e-16 89.7 196 36.2
MD17G1197300 Malus domestica HOM05D003101 ORTHO05D003550 5.2e-16 89.7 75 61.3
THA.LOC104800435 Tarenaya hassleriana HOM05D003101 ORTHO05D003550 5.2e-16 89.7 258 31.0
CsaV3_7G033030 Cucumis sativus L. HOM05D003101 ORTHO05D003550 6.7e-16 89.4 229 33.6
Peaxi162Scf00015g00341 Petunia axillaris HOM05D003101 ORTHO05D003550 6.7e-16 89.4 252 36.5
FAN02G4233 Fragaria x ananassa HOM05D003101 ORTHO05D003550 8.8e-16 89.0 226 39.4
Manes.11G048500 Manihot esculenta HOM05D003101 ORTHO05D003550 8.8e-16 89.0 189 38.6
Cc04_g03550 Coffea canephora HOM05D003101 ORTHO05D003550 1.2e-15 88.6 243 36.2
Duzib235G1478 Durio zibethinus HOM05D003101 ORTHO05D003550 1.2e-15 88.6 209 37.8
Gorai.002G058500 Gossypium raimondii HOM05D003101 ORTHO05D003550 1.2e-15 88.6 196 35.7
THA.LOC104812516 Tarenaya hassleriana HOM05D003101 ORTHO05D003550 1.2e-15 88.6 278 32.7
CAN.G438.56 Capsicum annuum HOM05D003101 ORTHO05D003550 1.5e-15 88.2 251 35.5
Gohir.A02G122300 Gossypium hirsutum HOM05D003101 ORTHO05D003550 1.5e-15 88.2 218 32.6
TPR.G24188 Trifolium pratense HOM05D003101 ORTHO05D003550 1.5e-15 88.2 244 38.9
SGA_v2.0_scaffold117G32385 Striga asiatica HOM05D003101 ORTHO05D003550 2.0e-15 87.8 254 32.3
Sp5g35780 Schrenkiella parvula HOM05D003101 ORTHO05D003550 2.6e-15 87.4 189 40.2
DCAR_000323 Daucus carota HOM05D003101 ORTHO05D003550 3.3e-15 87.0 216 34.3
DCAR_021316 Daucus carota HOM05D003101 ORTHO05D003550 3.3e-15 87.0 216 34.3
Sed0012835 Sechium edule HOM05D003101 ORTHO05D003550 3.3e-15 87.0 188 36.2
unitig_8.g3892 Utricularia gibba HOM05D003101 ORTHO05D003550 3.3e-15 87.0 213 33.3
AT1G80000 Arabidopsis thaliana HOM05D003101 ORTHO05D003550 7.5e-15 85.9 263 36.9
Nitab4.5_0006801g0040 Nicotiana tabacum HOM05D003101 ORTHO05D003550 7.5e-15 85.9 254 35.0
Oeu024064.1 Olea europaea HOM05D003101 ORTHO05D003550 7.5e-15 85.9 211 35.5
BolC6t38053H Brassica oleracea HOM05D003101 ORTHO05D003550 9.7e-15 85.5 248 31.5
FAN09G0931 Fragaria x ananassa HOM05D003101 ORTHO05D003550 1.3e-14 85.1 185 42.2
HanXRQChr14g0455931 Helianthus annuus HOM05D003101 ORTHO05D003550 1.3e-14 85.1 269 33.8
Thhalv10018298m.g Eutrema salsugineum HOM05D003101 ORTHO05D003550 1.7e-14 84.7 263 36.1
FAN14G4821 Fragaria x ananassa HOM05D003101 ORTHO05D003550 2.2e-14 84.3 226 36.3
Glyma.15G013500 Glycine max HOM05D003101 ORTHO05D003550 2.2e-14 84.3 241 32.4
SHI24317 Sapria himalayana HOM05D003101 ORTHO05D003550 2.2e-14 84.3 276 30.4
SGA_v2.0_scaffold279G46820 Striga asiatica HOM05D003101 ORTHO05D003550 2.2e-14 84.3 193 34.2
BcaB02g07299 Brassica carinata HOM05D003101 ORTHO05D003550 2.8e-14 84.0 251 36.3
Carub.0002s2751 Capsella rubella HOM05D003101 ORTHO05D003550 2.8e-14 84.0 279 34.1
FvH4_6g30960 Fragaria vesca HOM05D003101 ORTHO05D003550 2.8e-14 84.0 226 36.3
Gohir.A09G084000 Gossypium hirsutum HOM05D003101 ORTHO05D003550 2.8e-14 84.0 182 40.1
Sed0009602 Sechium edule HOM05D003101 ORTHO05D003550 2.8e-14 84.0 197 34.5
DCAR_016225 Daucus carota HOM05D003101 ORTHO05D003550 3.7e-14 83.6 87 55.2
MD09G1214900 Malus domestica HOM05D003101 ORTHO05D003550 4.8e-14 83.2 279 34.4
Oeu033489.1 Olea europaea HOM05D003101 ORTHO05D003550 4.8e-14 83.2 194 36.1
Os05g0534600 Oryza sativa ssp. japonica HOM05D003101 ORTHO05D003550 6.3e-14 82.8 65 55.4
CARHR074480 Cardamine hirsuta HOM05D003101 ORTHO05D003550 8.2e-14 82.4 260 35.8
Oeu063973.3 Olea europaea HOM05D003101 ORTHO05D003550 8.2e-14 82.4 202 32.7
arahy.Tifrunner.gnm1.ann1.QF777V Arachis hypogaea HOM05D003101 ORTHO05D003550 1.1e-13 82.0 237 37.1
arahy.Tifrunner.gnm1.ann1.V93J5T Arachis hypogaea HOM05D003101 ORTHO05D003550 1.1e-13 82.0 237 37.1
AL2G41540 Arabidopsis lyrata HOM05D003101 ORTHO05D003550 1.4e-13 81.6 265 34.7
Duzib160G0782 Durio zibethinus HOM05D003101 ORTHO05D003550 1.4e-13 81.6 229 32.3
Actinidia08970 Actinidia chinensis HOM05D003101 ORTHO05D003550 1.8e-13 81.3 144 41.0
BcaC08g45284 Brassica carinata HOM05D003101 ORTHO05D003550 1.8e-13 81.3 266 34.6
C06p28830 Brassica napus HOM05D003101 ORTHO05D003550 1.8e-13 81.3 266 34.6
Gohir.D09G083800 Gossypium hirsutum HOM05D003101 ORTHO05D003550 1.8e-13 81.3 194 43.8
Gorai.006G099800 Gossypium raimondii HOM05D003101 ORTHO05D003550 1.8e-13 81.3 194 43.8
Solyc12g042990.3 Solanum lycopersicum HOM05D003101 ORTHO05D003550 1.8e-13 81.3 200 33.0
PGSC0003DMG401028616 Solanum tuberosum HOM05D003101 ORTHO05D003550 1.8e-13 81.3 212 35.8
Aa31LG4G300 Aethionema arabicum HOM05D000045 ORTHO05D000067 2.4e-13 80.9 264 33.3
Nitab4.5_0002327g0040 Nicotiana tabacum HOM05D003101 ORTHO05D003550 3.1e-13 80.5 260 35.0
Potri.003G056500 Populus trichocarpa HOM05D003101 ORTHO05D003550 3.1e-13 80.5 206 33.5
BolC5t30078H Brassica oleracea HOM05D003101 ORTHO05D003550 5.3e-13 79.7 277 34.3
Ah.01g021210 Amaranthus hybridus HOM05D003101 ORTHO05D003550 7.0e-13 79.3 214 31.3
Nitab4.5_0000351g0170 Nicotiana tabacum HOM05D003101 ORTHO05D003550 9.1e-13 79.0 68 54.4
Sabra03G0031900 Salix brachista HOM05D003101 ORTHO05D003550 1.2e-12 78.6 181 32.6
PSO063G5160 Papaver somniferum HOM05D003101 ORTHO05D003550 2.7e-12 77.4 278 29.5
ECA247G3305 Erigeron canadensis HOM05D003101 ORTHO05D003550 4.5e-12 76.6 263 30.4
AT1G15280 Arabidopsis thaliana HOM05D003101 ORTHO05D003550 5.9e-12 76.3 276 34.8
C05p13410 Brassica napus HOM05D003101 ORTHO05D003550 7.7e-12 75.9 277 34.3
Sopen12g022220 Solanum pennellii HOM05D003101 ORTHO05D003550 7.7e-12 75.9 200 33.0
Zm00001eb353830 Zea mays HOM05D003101 ORTHO05D003550 1.0e-11 75.5 79 50.6
A08p31660 Brassica napus HOM05D003101 ORTHO05D003550 2.9e-11 73.9 199 37.7
BraA08t35088Z Brassica rapa HOM05D003101 ORTHO05D003550 2.9e-11 73.9 199 37.7
Thhalv10007225m.g Eutrema salsugineum HOM05D003101 ORTHO05D003550 2.9e-11 73.9 253 35.6
C08p17080 Brassica napus HOM05D003101 ORTHO05D003550 5.0e-11 73.2 219 37.0
BolC8t49334H Brassica oleracea HOM05D003101 ORTHO05D003550 5.0e-11 73.2 219 37.0
AL1G27370 Arabidopsis lyrata HOM05D003101 ORTHO05D003550 1.9e-10 71.2 252 35.3
Lj5C62G3 Lonicera japonica HOM05D003101 ORTHO05D003550 2.5e-10 70.9 221 30.3
BcaC07g38777 Brassica carinata HOM05D003101 ORTHO05D003550 9.4e-10 68.9 218 35.8
Zm00001eb293900 Zea mays HOM05D003101 ORTHO05D003550 1.2e-09 68.6 339 26.0
Sp1g13590 Schrenkiella parvula HOM05D003101 ORTHO05D003550 1.6e-09 68.2 278 34.2
Carub.0001s1504 Capsella rubella HOM05D003101 ORTHO05D003550 1.4e-08 65.1 276 33.7
BraA06t24308Z Brassica rapa HOM05D003101 ORTHO05D003550 8.8e-08 62.4 214 34.1
CARHR015810 Cardamine hirsuta HOM05D003101 ORTHO05D003550 1.2e-07 62.0 281 33.8
BcaB03g13068 Brassica carinata HOM05D003101 ORTHO05D003550 1.5e-07 61.6 197 35.5
A06p11280 Brassica napus HOM05D003101 ORTHO05D003550 2.0e-07 61.2 214 34.6
MD00G1201000 Malus domestica HOM05D003101 ORTHO05D003550 2.6e-07 60.8 177 32.8
Os01g0719400 Oryza sativa ssp. japonica HOM05D003101 ORTHO05D003550 4.4e-07 60.1 67 49.3
Haze_16450 Corylus avellana HOM05D003101 ORTHO05D003550 7.5e-07 59.3 209 38.3
Duzib187G0750 Durio zibethinus HOM05D003101 ORTHO05D026231 9.8e-07 58.9 73 41.1
Oeu000441.3 Olea europaea HOM05D003101 ORTHO05D003550 2.8e-06 57.4 266 25.6
Lj9A506T42 Lonicera japonica HOM05D003101 ORTHO05D003550 6.3e-06 56.2 206 31.1


User provided reference genes

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