Gene: Solyc12g042990.3

General Information

Structural Information

  • Species Solanum lycopersicum
  • Gene Identifier Solyc12g042990.3
  • Transcript Identifier Solyc12g042990.3.1
  • Gene Type Coding gene
  • Location SL4.0ch12 : 58216537-58225455 : negative

Gene Family Information

  • ID HOM05D003101
  • #Genes/#Species 221/93
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid Solyc12g042990.3.1
  • uniprot A0A3Q7JW38
  • gene_id Solyc12g042990

Descriptions

  • Description CASC3/Barentsz eIF4AIII binding protein (AHRD V3.3 *** AT1G80000.3)
  • Loading (ortholog descriptions from ath)...

Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0006397
IEA
GOA DatabasemRNA processing
GO:0006397
IEA
InterPromRNA processing
GO:0006417
IEA
GOA Databaseregulation of translation
GO:0008380
IEA
GOA DatabaseRNA splicing
GO:0051028
IEA
GOA DatabasemRNA transport
GO:0000184
IEA
GOA Databasenuclear-transcribed mRNA catabolic process, nonsense-mediated decay

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0003729
IEA
GOA DatabasemRNA binding
GO:0003729
IEA
InterPromRNA binding
GO:0003723
IEA
GOA DatabaseRNA binding

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0035145
IEA
GOA Databaseexon-exon junction complex
GO:0035145
IEA
InterProexon-exon junction complex
GO:0005737
IEA
GOA Databasecytoplasm
GO:0005634
IEA
GOA Databasenucleus
GO:0005829
ISO
PLAZA Integrative Orthologycytosol AT1G15280

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR018545 Btz domain
IPR044796 Protein MLN51 homolog, plant
Mapman id Description
17.3.1.1.4 Protein biosynthesis.mRNA quality control.Exon Junction complex (EJC).core components.component CASC3