Gene: AT1G15280

General Information

Structural Information

  • Species Arabidopsis thaliana
  • Gene Identifier AT1G15280
  • Transcript Identifier AT1G15280.2
  • Gene Type Coding gene
  • Location Chr1 : 5252538-5256214 : positive

Gene Family Information

  • ID HOM05D003101
  • #Genes/#Species 221/93
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid AT1G15280.2
  • uniprot Q8H1F3

Descriptions

  • Description CASC3/Barentsz eIF4AIII binding protein
  • Computational description CASC3/Barentsz eIF4AIII binding; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cytosol; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: CASC3/Barentsz eIF4AIII binding (InterPro:IPR018545); BEST Arabidopsis thaliana protein match is: CASC3/Barentsz eIF4AIII binding (TAIR:AT1G80000.2); Has 4070 Blast hits to 2291 proteins in 306 species: Archae - 2; Bacteria - 223; Metazoa - 1249; Fungi - 308; Plants - 219; Viruses - 71; Other Eukaryotes - 1998 (source: NCBI BLink).
  • Computational description CASC3/Barentsz eIF4AIII binding; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cytosol; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: CASC3/Barentsz eIF4AIII binding (InterPro:IPR018545); BEST Arabidopsis thaliana protein match is: CASC3/Barentsz eIF4AIII binding (TAIR:AT1G80000.2); Has 4051 Blast hits to 2285 proteins in 311 species: Archae - 2; Bacteria - 232; Metazoa - 1228; Fungi - 302; Plants - 228; Viruses - 67; Other Eukaryotes - 1992 (source: NCBI BLink).
  • Loading (ortholog descriptions from ath)...

Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0006397
IEA
GOA DatabasemRNA processing
GO:0006397
IEA
InterPromRNA processing
GO:0000184
IEA
GOA Databasenuclear-transcribed mRNA catabolic process, nonsense-mediated decay
GO:0051028
IEA
GOA DatabasemRNA transport
GO:0008380
IEA
GOA DatabaseRNA splicing
GO:0006417
IEA
GOA Databaseregulation of translation
GO:0008150
ND
Gene Ontologybiological_process

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0003729
IDA, HDA
IEA
Gene OntologymRNA binding1 2
GO:0003729
IEA
InterPromRNA binding
GO:0003723
IEA
GOA DatabaseRNA binding

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0035145
IEA
Gene Ontologyexon-exon junction complex
GO:0035145
IEA
InterProexon-exon junction complex
GO:0005829
IDA
GOA Databasecytosol
GO:0005634
IEA
GOA Databasenucleus
GO:0005634
ISM
Gene Ontologynucleus
GO:0005737
IEA
GOA Databasecytoplasm

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR018545 Btz domain
IPR044796 Protein MLN51 homolog, plant
Mapman id Description
17.3.1.1.4 Protein biosynthesis.mRNA quality control.Exon Junction complex (EJC).core components.component CASC3