Gene: AT1G80000

General Information

Structural Information

  • Species Arabidopsis thaliana
  • Gene Identifier AT1G80000
  • Transcript Identifier AT1G80000.2
  • Gene Type Coding gene
  • Location Chr1 : 30093195-30096742 : positive

Gene Family Information

  • ID HOM05D003101
  • #Genes/#Species 221/93
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid AT1G80000.2
  • uniprot Q93ZJ9

Descriptions

  • Description CASC3/Barentsz eIF4AIII binding protein
  • Computational description CASC3/Barentsz eIF4AIII binding; CONTAINS InterPro DOMAIN/s: CASC3/Barentsz eIF4AIII binding (InterPro:IPR018545); BEST Arabidopsis thaliana protein match is: CASC3/Barentsz eIF4AIII binding (TAIR:AT1G15280.2); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
  • Computational description CASC3/Barentsz eIF4AIII binding; CONTAINS InterPro DOMAIN/s: CASC3/Barentsz eIF4AIII binding (InterPro:IPR018545); BEST Arabidopsis thaliana protein match is: CASC3/Barentsz eIF4AIII binding (TAIR:AT1G15280.2); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
  • Loading (ortholog descriptions from ath)...

Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0006397
IEA
GOA DatabasemRNA processing
GO:0006397
IEA
InterPromRNA processing
GO:0006417
IEA
GOA Databaseregulation of translation
GO:0008380
IEA
GOA DatabaseRNA splicing
GO:0051028
IEA
GOA DatabasemRNA transport
GO:0000184
IEA
GOA Databasenuclear-transcribed mRNA catabolic process, nonsense-mediated decay

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0003729
IDA, HDA
IEA
Gene OntologymRNA binding1 2
GO:0003729
IEA
InterPromRNA binding
GO:0003723
IEA
GOA DatabaseRNA binding

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005634
IEA
GOA Databasenucleus
GO:0005634
ISM
Gene Ontologynucleus
GO:0035145
IEA
Gene Ontologyexon-exon junction complex
GO:0035145
IEA
InterProexon-exon junction complex
GO:0005737
IEA
GOA Databasecytoplasm

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR018545 Btz domain
IPR044796 Protein MLN51 homolog, plant
Mapman id Description
17.3.1.1.4 Protein biosynthesis.mRNA quality control.Exon Junction complex (EJC).core components.component CASC3