Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c12_7700 Physcomitrium patens HOM05D005935 ORTHO05D007012 6.4e-81 304.3 184 100.0
Pp3c4_20180 Physcomitrium patens HOM05D005935 ORTHO05D007012 1.9e-53 213.0 150 88.7
Migut.N01391 Erythranthe guttata HOM05D005935 ORTHO05D007012 1.0e-46 190.7 162 76.5
Sed0001365 Sechium edule HOM05D005935 ORTHO05D007012 1.8e-46 189.9 159 79.2
Manes.09G175700 Manihot esculenta HOM05D005935 ORTHO05D007012 5.1e-46 188.3 159 77.4
Eucgr.H03282 Eucalyptus grandis HOM05D005935 ORTHO05D007012 6.7e-46 188.0 162 77.2
GSVIVG01031220001 Vitis vinifera HOM05D005935 ORTHO05D007012 6.7e-46 188.0 162 75.9
arahy.Tifrunner.gnm1.ann1.7UDZ1N Arachis hypogaea HOM05D005935 ORTHO05D007012 8.7e-46 187.6 150 75.3
PSO170G3047 Papaver somniferum HOM05D005935 ORTHO05D007012 1.1e-45 187.2 161 77.6
PSO357G0321 Papaver somniferum HOM05D005935 ORTHO05D007012 1.1e-45 187.2 161 77.6
Hma1.2p1_0008F-1.1_g005750 Hydrangea macrophylla HOM05D005935 ORTHO05D007012 1.5e-45 186.8 157 79.0
ClCG02G015080 Citrullus lanatus HOM05D005935 ORTHO05D007012 1.9e-45 186.4 159 76.7
COL.COLO4_04140 Corchorus olitorius HOM05D005935 ORTHO05D007012 1.9e-45 186.4 150 78.7
MELO3C004198.2 Cucumis melo HOM05D005935 ORTHO05D007012 1.9e-45 186.4 159 76.7
CsaV3_2G006940 Cucumis sativus L. HOM05D005935 ORTHO05D007012 1.9e-45 186.4 159 76.7
Dinv24425 Davidia involucrata HOM05D005935 ORTHO05D007012 1.9e-45 186.4 161 74.5
Lalb_Chr04g0260471 Lupinus albus HOM05D005935 ORTHO05D007012 1.9e-45 186.4 150 69.3
PGR031G1309 Punica granatum HOM05D005935 ORTHO05D007012 1.9e-45 186.4 162 74.7
SEGI_34613 Sequoiadendron giganteum HOM05D005935 ORTHO05D007012 1.9e-45 186.4 150 74.7
THA.LOC104802776 Tarenaya hassleriana HOM05D005935 ORTHO05D007012 1.9e-45 186.4 158 74.7
SGA_v2.0_scaffold80G25879 Striga asiatica HOM05D005935 ORTHO05D007012 2.5e-45 186.0 161 75.8
MSTRG.27950 Avicennia marina HOM05D005935 ORTHO05D007012 3.3e-45 185.7 161 75.8
Potri.013G010300 Populus trichocarpa HOM05D005935 ORTHO05D007012 3.3e-45 185.7 150 80.7
Lsat_1_v5_gn_5_102820 Lactuca sativa HOM05D005935 ORTHO05D007012 4.3e-45 185.3 168 74.4
Prupe.6G314900 Prunus persica HOM05D005935 ORTHO05D007012 4.3e-45 185.3 159 76.7
SalBow3G1520 Salvia bowleyana HOM05D005935 ORTHO05D007012 4.3e-45 185.3 169 74.0
Zm00001eb121760 Zea mays HOM05D005935 ORTHO05D007012 4.3e-45 185.3 150 75.3
Atru.chr2.148 Acer truncatum HOM05D005935 ORTHO05D007012 5.6e-45 184.9 159 77.4
Actinidia16851 Actinidia chinensis HOM05D005935 ORTHO05D007012 5.6e-45 184.9 150 79.3
MD04G1195100 Malus domestica HOM05D005935 ORTHO05D007012 7.4e-45 184.5 159 76.1
TAR362G1094 Trochodendron aralioides HOM05D005935 ORTHO05D007012 7.4e-45 184.5 159 74.8
Cc02_g34830 Coffea canephora HOM05D005935 ORTHO05D007012 9.6e-45 184.1 158 76.6
HanXRQChr10g0299201 Helianthus annuus HOM05D005935 ORTHO05D007012 9.6e-45 184.1 150 80.0
Aqoxy2G00839 Aquilegia oxysepala HOM05D005935 ORTHO05D007012 1.3e-44 183.7 161 77.0
Glyma.19G228900 Glycine max HOM05D005935 ORTHO05D007012 1.3e-44 183.7 162 71.0
Cpa.g.sc48.144 Carica papaya HOM05D005935 ORTHO05D007012 1.6e-44 183.3 150 78.7
Glyma.03G231900 Glycine max HOM05D005935 ORTHO05D007012 1.6e-44 183.3 150 74.7
Mapoly0111s0002 Marchantia polymorpha HOM05D005935 ORTHO05D007012 1.6e-44 183.3 123 74.8
SGA_v2.0_scaffold81G26126 Striga asiatica HOM05D005935 ORTHO05D007012 1.6e-44 183.3 174 71.8
arahy.Tifrunner.gnm1.ann1.G5WI6L Arachis hypogaea HOM05D005935 ORTHO05D007012 2.1e-44 183.0 150 74.7
arahy.Tifrunner.gnm1.ann1.H1X696 Arachis hypogaea HOM05D005935 ORTHO05D007012 2.1e-44 183.0 150 74.7
arahy.Tifrunner.gnm1.ann1.I9BDFC Arachis hypogaea HOM05D005935 ORTHO05D007012 2.1e-44 183.0 150 74.0
Thecc.05G321000 Theobroma cacao HOM05D005935 ORTHO05D007012 2.1e-44 183.0 150 78.7
ATR0767G209 Amborella trichopoda HOM05D005935 ORTHO05D007012 2.8e-44 182.6 162 74.7
CSS0047945 Camellia sinensis var. sinensis HOM05D005935 ORTHO05D007012 2.8e-44 182.6 150 79.3
CiPaw.07G028100 Carya illinoinensis HOM05D005935 ORTHO05D007012 2.8e-44 182.6 159 76.1
FvH4_6g07240 Fragaria vesca HOM05D005935 ORTHO05D007012 2.8e-44 182.6 161 75.8
Os03g0831900 Oryza sativa ssp. japonica HOM05D005935 ORTHO05D007012 2.8e-44 182.6 161 72.0
PSO478G5244 Papaver somniferum HOM05D005935 ORTHO05D007012 2.8e-44 182.6 161 77.0
Aqoxy4G02482 Aquilegia oxysepala HOM05D005935 ORTHO05D007012 3.7e-44 182.2 161 76.4
BcaC05g29782 Brassica carinata HOM05D005935 ORTHO05D007012 3.7e-44 182.2 158 71.5
CANSAT54G1507 Cannabis sativa HOM05D005935 ORTHO05D007012 3.7e-44 182.2 150 79.3
Gohir.A08G206600 Gossypium hirsutum HOM05D005935 ORTHO05D007012 3.7e-44 182.2 150 78.7
Gohir.D08G223300 Gossypium hirsutum HOM05D005935 ORTHO05D007012 3.7e-44 182.2 150 78.7
Gorai.004G237200 Gossypium raimondii HOM05D005935 ORTHO05D007012 3.7e-44 182.2 150 78.7
Phvul.001G225500 Phaseolus vulgaris HOM05D005935 ORTHO05D007012 3.7e-44 182.2 162 70.4
RcHm_v2.0_Chr3g0456881 Rosa chinensis HOM05D005935 ORTHO05D007012 3.7e-44 182.2 161 77.0
VMungo1383G1193 Vigna mungo HOM05D005935 ORTHO05D007012 3.7e-44 182.2 162 70.4
TAR636G0846 Trochodendron aralioides HOM05D005935 ORTHO05D007012 4.8e-44 181.8 159 75.5
Lj1g0021681 Lotus japonicus HOM05D005935 ORTHO05D007012 6.2e-44 181.4 118 77.1
ECA234G4853 Erigeron canadensis HOM05D005935 ORTHO05D007012 8.1e-44 181.0 150 78.0
TWI36G1229 Tripterygium wilfordii HOM05D005935 ORTHO05D007012 8.1e-44 181.0 157 75.2
Solyc01g100330.3 Solanum lycopersicum HOM05D005935 ORTHO05D007012 1.1e-43 180.6 161 73.3
Sopen01g043840 Solanum pennellii HOM05D005935 ORTHO05D007012 1.1e-43 180.6 161 73.3
PGSC0003DMG400002806 Solanum tuberosum HOM05D005935 ORTHO05D007012 1.1e-43 180.6 161 73.3
Haze_04079 Corylus avellana HOM05D005935 ORTHO05D007012 1.4e-43 180.3 159 73.0
DCAR_005416 Daucus carota HOM05D005935 ORTHO05D007012 1.4e-43 180.3 161 74.5
FAN05G5324 Fragaria x ananassa HOM05D005935 ORTHO05D007012 1.8e-43 179.9 150 78.7
Peaxi162Scf00673g00126 Petunia axillaris HOM05D005935 ORTHO05D007012 1.8e-43 179.9 176 69.9
Sc09g0002670 Simmondsia chinensis HOM05D005935 ORTHO05D007012 1.8e-43 179.9 150 78.7
Ah.06g188880 Amaranthus hybridus HOM05D005935 ORTHO05D007012 2.4e-43 179.5 159 74.2
EL10Ac4g09829 Beta vulgaris HOM05D005935 ORTHO05D007012 2.4e-43 179.5 162 73.5
FAN02G1619 Fragaria x ananassa HOM05D005935 ORTHO05D007012 2.4e-43 179.5 150 78.7
FAN14G3557 Fragaria x ananassa HOM05D005935 ORTHO05D007012 2.4e-43 179.5 150 78.7
Lalb_Chr18g0046051 Lupinus albus HOM05D005935 ORTHO05D007012 2.4e-43 179.5 150 74.0
Medtr7g112060 Medicago truncatula HOM05D005935 ORTHO05D007012 2.4e-43 179.5 150 73.3
CDE05G0147 Ceratophyllum demersum HOM05D005935 ORTHO05D007012 3.1e-43 179.1 173 72.3
Psat3g013040 Pisum sativum HOM05D005935 ORTHO05D007012 3.1e-43 179.1 150 71.3
CARHR080230 Cardamine hirsuta HOM05D005935 ORTHO05D007012 4.0e-43 178.7 117 76.1
CDE11G0767 Ceratophyllum demersum HOM05D005935 ORTHO05D007012 4.0e-43 178.7 173 71.7
Ca_09298_v3 Cicer arietinum L. HOM05D005935 ORTHO05D007012 5.3e-43 178.3 162 69.1
MD12G1207200 Malus domestica HOM05D005935 ORTHO05D007012 5.3e-43 178.3 159 76.7
AL3G16500 Arabidopsis lyrata HOM05D005935 ORTHO05D007012 6.9e-43 177.9 158 72.8
AT3G05760 Arabidopsis thaliana HOM05D005935 ORTHO05D007012 6.9e-43 177.9 158 73.4
FAN09G4449 Fragaria x ananassa HOM05D005935 ORTHO05D007012 6.9e-43 177.9 119 75.6
Sp3g04650 Schrenkiella parvula HOM05D005935 ORTHO05D007012 6.9e-43 177.9 117 76.1
Carub.0003s0513 Capsella rubella HOM05D005935 ORTHO05D007012 9.0e-43 177.6 158 72.8
CAN.G1715.16 Capsicum annuum HOM05D005935 ORTHO05D007012 9.0e-43 177.6 162 72.8
QL01p019294 Quercus lobata HOM05D005935 ORTHO05D007012 9.0e-43 177.6 150 78.0
TWI56G1463 Tripterygium wilfordii HOM05D005935 ORTHO05D007012 9.0e-43 177.6 150 76.7
Ciclev10002528m.g Citrus clementina HOM05D005935 ORTHO05D007012 1.5e-42 176.8 150 78.0
unitig_21.g20172 Utricularia gibba HOM05D005935 ORTHO05D007012 1.5e-42 176.8 160 73.8
Duzib128G1094 Durio zibethinus HOM05D005935 ORTHO05D007012 2.6e-42 176.0 106 80.2
C05p61480 Brassica napus HOM05D002110 ORTHO05D007012 5.8e-42 174.9 162 71.6
BcaC05g30089 Brassica carinata HOM05D005935 ORTHO05D007012 1.3e-41 173.7 117 73.5
BolC5t34806H Brassica oleracea HOM05D002110 ORTHO05D007012 1.3e-41 173.7 117 73.5
BraA05t22944Z Brassica rapa HOM05D002110 ORTHO05D007012 1.3e-41 173.7 117 73.5
QL03p018299 Quercus lobata HOM05D005935 ORTHO05D007012 2.2e-41 172.9 150 76.7
TPR.G1633 Trifolium pratense HOM05D005935 ORTHO05D007012 2.9e-41 172.6 175 61.7
AUR62000683 Chenopodium quinoa HOM05D005935 ORTHO05D007012 3.8e-41 172.2 105 79.0
Nn3g21642 Nelumbo nucifera HOM05D005935 ORTHO05D007012 4.9e-41 171.8 159 71.1
AagrBONN_evm.TU.Sc2ySwM_344.1201 Anthoceros agrestis HOM05D005935 ORTHO05D007012 6.5e-41 171.4 106 78.3
Lj5A336T44 Lonicera japonica HOM05D005935 ORTHO05D007012 4.2e-40 168.7 110 76.4
AagrBONN_evm.TU.Sc2ySwM_228.1845 Anthoceros agrestis HOM05D005935 ORTHO05D007012 5.5e-40 168.3 102 79.4
SMO201G0167 Selaginella moellendorffii HOM05D005935 ORTHO05D007012 7.1e-40 167.9 169 65.1
Aa31LG5G16170 Aethionema arabicum HOM05D005935 ORTHO05D007012 6.0e-39 164.9 103 77.7
Nitab4.5_0013342g0020 Nicotiana tabacum HOM05D000001 ORTHO05D004269 7.9e-39 164.5 151 72.8
AagrBONN_evm.TU.Sc2ySwM_368.1862 Anthoceros agrestis HOM05D005935 ORTHO05D007012 1.9e-37 159.8 92 84.8
vmacro01555 Vaccinium macrocarpon HOM05D005935 ORTHO05D007012 1.9e-37 159.8 202 58.9
HPP92_015241 Vanilla planifolia HOM05D005935 ORTHO05D007012 5.7e-37 158.3 159 71.1
Thhalv10022198m.g Eutrema salsugineum HOM05D005935 ORTHO05D007012 3.7e-36 155.6 145 58.6
Nitab4.5_0000155g0010 Nicotiana tabacum HOM05D005935 ORTHO05D007012 6.2e-36 154.8 173 66.5
AUR62005273 Chenopodium quinoa HOM05D005935 ORTHO05D007012 1.4e-32 143.7 105 69.5
Hund21747 Selenicereus undatus HOM05D005935 ORTHO05D007012 2.5e-32 142.9 136 72.1
CSS0009551 Camellia sinensis var. sinensis HOM05D005935 ORTHO05D007012 2.7e-31 139.4 161 67.1
Nitab4.5_0000368g0260 Nicotiana tabacum HOM05D005935 ORTHO05D007012 1.1e-29 134.0 117 63.2
RcHm_v2.0_Chr7g0179971 Rosa chinensis HOM05D005935 ORTHO05D007012 3.3e-29 132.5 100 63.0
Hund07136 Selenicereus undatus HOM05D005935 ORTHO05D007012 1.6e-28 130.2 256 44.1
Nitab4.5_0007747g0010 Nicotiana tabacum HOM05D005935 ORTHO05D007012 6.3e-28 128.3 119 76.5
Cre07.g341650 Chlamydomonas reinhardtii HOM05D005935 ORTHO05D007012 5.9e-26 121.7 89 64.0
Rhsim11G0094200 Rhododendron simsii HOM05D005935 ORTHO05D007012 1.3e-25 120.6 86 72.1
CSS0024691 Camellia sinensis var. sinensis HOM05D005935 ORTHO05D007012 1.4e-24 117.1 100 66.0
Oeu013219.2 Olea europaea HOM05D005935 ORTHO05D007012 1.5e-21 107.1 174 55.2
CBR_g38440 Chara braunii HOM05D005935 ORTHO05D007012 4.3e-21 105.5 60 78.3
Sabra13G0008800 Salix brachista HOM05D005935 ORTHO05D007012 5.7e-21 105.1 174 42.5
CSS0031844 Camellia sinensis var. sinensis HOM05D005935 ORTHO05D007012 6.3e-20 101.7 75 74.7
FAN04G2955 Fragaria x ananassa HOM05D005935 ORTHO05D007012 6.3e-20 101.7 77 61.0
CSS0034550 Camellia sinensis var. sinensis HOM05D005935 ORTHO05D007012 1.7e-17 93.6 180 51.7
MCO03G264 Micromonas commoda HOM05D005935 ORTHO05D007012 1.4e-14 84.0 149 48.3
PRCOL_00000245 Prasinoderma coloniale HOM05D005935 ORTHO05D007012 1.1e-11 74.3 152 39.5
Zm00001eb307900 Zea mays HOM05D005935 ORTHO05D007012 4.5e-10 68.9 91 64.8
Zm00001eb180860 Zea mays HOM05D005935 ORTHO05D007012 5.0e-09 65.5 46 73.9
Zm00001eb114570 Zea mays HOM05D005935 ORTHO05D007012 1.5e-08 63.9 86 65.1
Cfa024511 Carpinus fangiana HOM05D005935 ORTHO05D007012 2.1e-07 60.1 121 30.6
Actinidia35528 Actinidia chinensis HOM05D005935 ORTHO05D007012 1.0e-06 57.8 231 36.4


User provided reference genes

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