Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.019G034900 Populus trichocarpa HOM05D004151 ORTHO05D004775 3.4e-64 248.8 176 100.0
Manes.08G144000 Manihot esculenta HOM05D004151 ORTHO05D004775 2.4e-57 226.1 155 87.1
Manes.09G141400 Manihot esculenta HOM05D004151 ORTHO05D004775 2.4e-57 226.1 155 85.8
Sabra13G0051900 Salix brachista HOM05D004151 ORTHO05D004775 1.7e-55 219.9 155 90.3
Potri.013G058400 Populus trichocarpa HOM05D004151 ORTHO05D004775 4.9e-55 218.4 155 90.3
Sabra19G0042500 Salix brachista HOM05D004151 ORTHO05D004775 7.9e-53 211.1 146 91.8
Sabra19G0044800 Salix brachista HOM05D004151 ORTHO05D004775 7.9e-53 211.1 146 91.8
Thecc.05G294500 Theobroma cacao HOM05D004151 ORTHO05D004775 2.3e-52 209.5 156 83.3
TAR369G0512 Trochodendron aralioides HOM05D004151 ORTHO05D004775 6.7e-52 208.0 155 86.5
TWI32G1207 Tripterygium wilfordii HOM05D004151 ORTHO05D004775 8.7e-52 207.6 156 85.3
Lj1g0021266 Lotus japonicus HOM05D004151 ORTHO05D004775 1.5e-51 206.8 174 83.3
SGA_v2.0_scaffold274G46513 Striga asiatica HOM05D004151 ORTHO05D004775 1.9e-51 206.5 159 86.8
ClCG04G005310 Citrullus lanatus HOM05D004151 ORTHO05D004775 2.5e-51 206.1 156 86.5
Cc06_g22960 Coffea canephora HOM05D004151 ORTHO05D004775 2.5e-51 206.1 158 77.8
MELO3C008801.2 Cucumis melo HOM05D004151 ORTHO05D004775 2.5e-51 206.1 156 84.6
CsaV3_4G013280 Cucumis sativus L. HOM05D004151 ORTHO05D004775 2.5e-51 206.1 156 76.3
Gohir.A08G213200 Gossypium hirsutum HOM05D004151 ORTHO05D004775 2.5e-51 206.1 151 84.8
Gohir.D08G230300 Gossypium hirsutum HOM05D004151 ORTHO05D004775 2.5e-51 206.1 151 84.8
Gorai.004G244500 Gossypium raimondii HOM05D004151 ORTHO05D004775 2.5e-51 206.1 151 84.8
QL07p019530 Quercus lobata HOM05D004151 ORTHO05D004775 3.3e-51 205.7 163 78.5
Duzib177G0709 Durio zibethinus HOM05D004151 ORTHO05D004775 9.6e-51 204.1 156 82.1
CDE06G0359 Ceratophyllum demersum HOM05D004151 ORTHO05D004775 1.3e-50 203.8 108 88.9
Lalb_Chr22g0359191 Lupinus albus HOM05D004151 ORTHO05D004775 1.3e-50 203.8 174 81.6
Sed0025621 Sechium edule HOM05D004151 ORTHO05D004775 1.6e-50 203.4 179 72.6
THA.LOC104827273 Tarenaya hassleriana HOM05D004151 ORTHO05D004775 1.6e-50 203.4 156 82.1
Oeu059999.1 Olea europaea HOM05D004151 ORTHO05D004775 2.8e-50 202.6 161 72.0
Duzib106G1401 Durio zibethinus HOM05D004151 ORTHO05D004775 3.7e-50 202.2 156 79.5
Psat0s1971g0280 Pisum sativum HOM05D004151 ORTHO05D004775 3.7e-50 202.2 155 85.8
Nitab4.5_0009048g0010 Nicotiana tabacum HOM05D004151 ORTHO05D004775 4.8e-50 201.8 158 74.7
Ah.06g191800 Amaranthus hybridus HOM05D004151 ORTHO05D004775 6.2e-50 201.4 158 77.8
CiPaw.09G001900 Carya illinoinensis HOM05D004151 ORTHO05D004775 6.2e-50 201.4 155 82.6
Lalb_Chr14g0364491 Lupinus albus HOM05D004151 ORTHO05D004775 6.2e-50 201.4 174 75.9
Nn7g35851 Nelumbo nucifera HOM05D004151 ORTHO05D004775 6.2e-50 201.4 154 81.2
THA.LOC104802867 Tarenaya hassleriana HOM05D004151 ORTHO05D004775 6.2e-50 201.4 157 82.2
Phvul.001G110400 Phaseolus vulgaris HOM05D004151 ORTHO05D004775 8.1e-50 201.1 155 84.5
Sc25g0004980 Simmondsia chinensis HOM05D004151 ORTHO05D004775 1.4e-49 200.3 155 73.5
Gohir.D11G310400 Gossypium hirsutum HOM05D004151 ORTHO05D004775 1.8e-49 199.9 151 82.8
Gorai.007G343400 Gossypium raimondii HOM05D004151 ORTHO05D004775 1.8e-49 199.9 151 82.8
PGR142G1491 Punica granatum HOM05D004151 ORTHO05D004775 1.8e-49 199.9 149 85.2
Sp3g02890 Schrenkiella parvula HOM05D004151 ORTHO05D004775 1.8e-49 199.9 109 88.1
TWI34G0161 Tripterygium wilfordii HOM05D004151 ORTHO05D004775 1.8e-49 199.9 160 85.0
MSTRG.19934 Avicennia marina HOM05D004151 ORTHO05D004775 2.4e-49 199.5 161 76.4
Nitab4.5_0007542g0010 Nicotiana tabacum HOM05D004151 ORTHO05D004775 2.4e-49 199.5 158 71.5
Sed0023399 Sechium edule HOM05D004151 ORTHO05D004775 2.4e-49 199.5 154 85.1
Solyc10g078540.3 Solanum lycopersicum HOM05D004151 ORTHO05D004775 2.4e-49 199.5 158 76.6
Sopen10g029190 Solanum pennellii HOM05D004151 ORTHO05D004775 2.4e-49 199.5 158 76.6
HPP92_021240 Vanilla planifolia HOM05D004151 ORTHO05D004775 2.4e-49 199.5 157 79.0
VMungo1383G2477 Vigna mungo HOM05D004151 ORTHO05D004775 2.4e-49 199.5 155 85.2
Glyma.16G041400 Glycine max HOM05D004151 ORTHO05D004775 4.0e-49 198.7 159 76.7
Oeu049600.1 Olea europaea HOM05D004151 ORTHO05D004775 4.0e-49 198.7 108 88.0
Os11g0579800 Oryza sativa ssp. japonica HOM05D004151 ORTHO05D004775 4.0e-49 198.7 154 80.5
TPR.G5895 Trifolium pratense HOM05D004151 ORTHO05D004775 4.0e-49 198.7 155 81.9
Gohir.A11G296500 Gossypium hirsutum HOM05D004151 ORTHO05D004775 5.3e-49 198.4 151 82.1
RcHm_v2.0_Chr3g0490211 Rosa chinensis HOM05D004151 ORTHO05D004775 5.3e-49 198.4 156 79.5
PGSC0003DMG400008366 Solanum tuberosum HOM05D004151 ORTHO05D004775 5.3e-49 198.4 154 76.0
arahy.Tifrunner.gnm1.ann1.JDMG7B Arachis hypogaea HOM05D004151 ORTHO05D004775 6.9e-49 198.0 150 86.7
arahy.Tifrunner.gnm1.ann1.PLSY77 Arachis hypogaea HOM05D004151 ORTHO05D004775 6.9e-49 198.0 150 86.7
Peaxi162Scf00003g04832 Petunia axillaris HOM05D004151 ORTHO05D004775 6.9e-49 198.0 161 68.3
Aa31LG11G11430 Aethionema arabicum HOM05D004151 ORTHO05D004775 9.0e-49 197.6 155 85.2
Ah.13g075350 Amaranthus hybridus HOM05D004151 ORTHO05D004775 9.0e-49 197.6 155 80.6
COL.COLO4_13597 Corchorus olitorius HOM05D004151 ORTHO05D004775 9.0e-49 197.6 147 87.1
Medtr7g085640 Medicago truncatula HOM05D004151 ORTHO05D004775 9.0e-49 197.6 151 87.4
GSVIVG01033401001 Vitis vinifera HOM05D004151 ORTHO05D004775 9.0e-49 197.6 157 71.3
Thhalv10021561m.g Eutrema salsugineum HOM05D004151 ORTHO05D004775 1.2e-48 197.2 108 88.0
Dinv37014 Davidia involucrata HOM05D004151 ORTHO05D004775 2.0e-48 196.4 183 73.2
Atru.chr5.2062 Acer truncatum HOM05D004151 ORTHO05D004775 2.6e-48 196.1 156 73.1
Cfa016441 Carpinus fangiana HOM05D004151 ORTHO05D004775 2.6e-48 196.1 178 75.3
FvH4_1g30320 Fragaria vesca HOM05D004151 ORTHO05D004775 3.4e-48 195.7 155 76.8
FAN19G1796 Fragaria x ananassa HOM05D004151 ORTHO05D004775 3.4e-48 195.7 155 78.7
FAN26G2823 Fragaria x ananassa HOM05D004151 ORTHO05D004775 3.4e-48 195.7 155 78.7
Aa31LG5G14500 Aethionema arabicum HOM05D004151 ORTHO05D004775 4.5e-48 195.3 130 84.6
CANSAT78G0749 Cannabis sativa HOM05D004151 ORTHO05D004775 4.5e-48 195.3 151 86.1
Haze_19418 Corylus avellana HOM05D004151 ORTHO05D004775 4.5e-48 195.3 157 77.7
Haze_19447 Corylus avellana HOM05D004151 ORTHO05D004775 4.5e-48 195.3 157 77.7
Dinv14579 Davidia involucrata HOM05D004151 ORTHO05D004775 4.5e-48 195.3 108 87.0
MD05G1045500 Malus domestica HOM05D004151 ORTHO05D004775 4.5e-48 195.3 156 72.4
CARHR078040 Cardamine hirsuta HOM05D004151 ORTHO05D004775 5.8e-48 194.9 108 83.3
EL10Ac3g06820 Beta vulgaris HOM05D004151 ORTHO05D004775 7.6e-48 194.5 152 84.9
Hund24835 Selenicereus undatus HOM05D004151 ORTHO05D004775 7.6e-48 194.5 154 79.9
Glyma.19G110900 Glycine max HOM05D004151 ORTHO05D004775 1.0e-47 194.1 163 79.1
SEGI_32651 Sequoiadendron giganteum HOM05D004151 ORTHO05D004775 1.0e-47 194.1 156 75.0
BcaNung05745 Brassica carinata HOM05D004151 ORTHO05D004775 1.3e-47 193.7 109 85.3
Carub.0006s1646 Capsella rubella HOM05D004151 ORTHO05D004775 1.3e-47 193.7 158 78.5
AUR62032690 Chenopodium quinoa HOM05D004151 ORTHO05D004775 1.3e-47 193.7 147 87.8
Zm00001eb200450 Zea mays HOM05D004151 ORTHO05D004775 1.3e-47 193.7 104 84.6
Migut.J01888 Erythranthe guttata HOM05D004151 ORTHO05D004775 1.7e-47 193.4 157 79.0
FAN23G0170 Fragaria x ananassa HOM05D004151 ORTHO05D004775 1.7e-47 193.4 155 78.1
CARHR194880 Cardamine hirsuta HOM05D004151 ORTHO05D004775 2.9e-47 192.6 163 76.7
PSO384G0229 Papaver somniferum HOM05D004151 ORTHO05D004775 2.9e-47 192.6 156 81.4
Atru.chr5.2060 Acer truncatum HOM05D004151 ORTHO05D004775 3.8e-47 192.2 156 72.4
AT3G03920 Arabidopsis thaliana HOM05D004151 ORTHO05D004775 3.8e-47 192.2 178 75.8
BolC1t05799H Brassica oleracea HOM05D004151 ORTHO05D004775 3.8e-47 192.2 155 76.8
Lsat_1_v5_gn_8_145841 Lactuca sativa HOM05D004151 ORTHO05D004775 3.8e-47 192.2 155 83.9
Sp6g26140 Schrenkiella parvula HOM05D004151 ORTHO05D004775 3.8e-47 192.2 158 77.8
Hma1.2p1_0134F.1_g061640 Hydrangea macrophylla HOM05D004151 ORTHO05D004775 4.9e-47 191.8 166 75.9
MD00G1189600 Malus domestica HOM05D004151 ORTHO05D004775 4.9e-47 191.8 156 67.9
AL3G13810 Arabidopsis lyrata HOM05D004151 ORTHO05D004775 6.5e-47 191.4 157 82.8
FAN28G2413 Fragaria x ananassa HOM05D004151 ORTHO05D004775 6.5e-47 191.4 146 78.1
Thhalv10014755m.g Eutrema salsugineum HOM05D004151 ORTHO05D004775 8.4e-47 191.0 158 69.0
A03p08690 Brassica napus HOM05D004151 ORTHO05D004775 1.1e-46 190.7 157 79.0
Lsat_1_v5_gn_8_24760 Lactuca sativa HOM05D004151 ORTHO05D004775 1.1e-46 190.7 154 83.8
PSO063G0165 Papaver somniferum HOM05D004151 ORTHO05D004775 1.1e-46 190.7 156 79.5
BolC3t13499H Brassica oleracea HOM05D004151 ORTHO05D004775 1.4e-46 190.3 155 78.1
BraA01t04550Z Brassica rapa HOM05D004151 ORTHO05D004775 1.4e-46 190.3 108 85.2
HanXRQChr08g0216931 Helianthus annuus HOM05D004151 ORTHO05D004775 1.4e-46 190.3 175 83.4
PSO339G5713 Papaver somniferum HOM05D004151 ORTHO05D004775 1.4e-46 190.3 151 82.8
Prupe.8G064800 Prunus persica HOM05D004151 ORTHO05D004775 1.4e-46 190.3 157 78.3
unitig_21.g20195 Utricularia gibba HOM05D004151 ORTHO05D004775 1.4e-46 190.3 155 72.9
A01p41270 Brassica napus HOM05D004151 ORTHO05D004775 4.2e-46 188.7 157 75.2
BNapus_Darmor_BZH_scaffold_78p00440 Brassica napus HOM05D004151 ORTHO05D004775 4.2e-46 188.7 157 75.2
PSO782G4796 Papaver somniferum HOM05D004151 ORTHO05D004775 7.1e-46 188.0 156 74.4
BcaNung05743 Brassica carinata HOM05D004151 ORTHO05D004775 9.3e-46 187.6 107 84.1
SalBow5G4201 Salvia bowleyana HOM05D004151 ORTHO05D004775 9.3e-46 187.6 149 73.8
Aqoxy1G00486 Aquilegia oxysepala HOM05D004151 ORTHO05D004775 1.2e-45 187.2 159 75.5
BcaB01g05179 Brassica carinata HOM05D004151 ORTHO05D004775 1.2e-45 187.2 155 77.4
C03p10140 Brassica napus HOM05D004151 ORTHO05D004775 1.2e-45 187.2 155 77.4
BraA03t10192Z Brassica rapa HOM05D004151 ORTHO05D004775 1.2e-45 187.2 155 77.4
Pp3c25_15020 Physcomitrium patens HOM05D004151 ORTHO05D004775 2.1e-45 186.4 107 78.5
vmacro09141 Vaccinium macrocarpon HOM05D004151 ORTHO05D004775 2.1e-45 186.4 155 81.3
Actinidia22083 Actinidia chinensis HOM05D004151 ORTHO05D004775 2.7e-45 186.0 97 89.7
ATR0697G007 Amborella trichopoda HOM05D004151 ORTHO05D004775 2.7e-45 186.0 146 85.6
CSS0045523 Camellia sinensis var. sinensis HOM05D004151 ORTHO05D004775 2.7e-45 186.0 150 82.0
HanXRQChr07g0204461 Helianthus annuus HOM05D004151 ORTHO05D004775 3.5e-45 185.7 149 79.9
Pp3c5_28430 Physcomitrium patens HOM05D004151 ORTHO05D004775 3.5e-45 185.7 107 78.5
Mapoly0086s0024 Marchantia polymorpha HOM05D004151 ORTHO05D004775 4.6e-45 185.3 108 77.8
Carub.0003s0316 Capsella rubella HOM05D004151 ORTHO05D004775 7.9e-45 184.5 107 81.3
ECA233G5487 Erigeron canadensis HOM05D004151 ORTHO05D004775 1.0e-44 184.1 156 76.3
BcaC03g13582 Brassica carinata HOM05D004151 ORTHO05D004775 1.3e-44 183.7 159 73.0
BolC2t06882H Brassica oleracea HOM05D004151 ORTHO05D004775 1.3e-44 183.7 159 73.0
Zm00001eb114360 Zea mays HOM05D004151 ORTHO05D004775 3.0e-44 182.6 144 63.2
AL6G29380 Arabidopsis lyrata HOM05D004151 ORTHO05D004775 1.5e-43 180.3 158 69.0
C02p09730 Brassica napus HOM05D004151 ORTHO05D004775 1.5e-43 180.3 159 72.3
AT5G18180 Arabidopsis thaliana HOM05D004151 ORTHO05D004775 3.3e-43 179.1 158 67.1
A02p04770 Brassica napus HOM05D004151 ORTHO05D004775 5.7e-43 178.3 158 70.9
AagrBONN_evm.TU.Sc2ySwM_362.2901 Anthoceros agrestis HOM05D004151 ORTHO05D004775 9.6e-43 177.6 156 71.2
BcaB05g23300 Brassica carinata HOM05D004151 ORTHO05D004775 2.8e-42 176.0 152 74.3
BraA02t05436Z Brassica rapa HOM05D004151 ORTHO05D004775 2.8e-42 176.0 159 69.8
Peaxi162Scf00076g01048 Petunia axillaris HOM05D004151 ORTHO05D004775 4.8e-42 175.3 160 70.0
Cpa.g.sc51.114 Carica papaya HOM05D004151 ORTHO05D004775 1.1e-41 174.1 91 89.0
CBR_g48747 Chara braunii HOM05D004151 ORTHO05D004775 1.1e-41 174.1 109 75.2
COL.COLO4_13598 Corchorus olitorius HOM05D004151 ORTHO05D004775 2.4e-41 172.9 148 77.7
Rhsim04G0087500 Rhododendron simsii HOM05D004151 ORTHO05D004775 9.0e-41 171.0 151 74.8
Hund19236 Selenicereus undatus HOM05D004151 ORTHO05D004775 1.5e-40 170.2 95 82.1
Ca_08267_v3 Cicer arietinum L. HOM05D004151 ORTHO05D004775 2.0e-40 169.9 89 88.8
CAN.G960.49 Capsicum annuum HOM05D004151 ORTHO05D004775 2.6e-40 169.5 93 86.0
Nitab4.5_0002769g0090 Nicotiana tabacum HOM05D004151 ORTHO05D004775 5.0e-39 165.2 161 68.3
Nitab4.5_0004844g0050 Nicotiana tabacum HOM05D004151 ORTHO05D004775 6.5e-39 164.9 89 86.5
Cre13.g567850 Chlamydomonas reinhardtii HOM05D004151 ORTHO05D004775 5.5e-38 161.8 156 69.9
MBI11_g31283_MAGBIO Magnolia biondii HOM05D004151 ORTHO05D004775 1.0e-36 157.5 81 88.9
MCO13G219 Micromonas commoda HOM05D004151 ORTHO05D004775 4.3e-35 152.1 94 70.2
SMO347G0554 Selaginella moellendorffii HOM05D004151 ORTHO05D004775 6.3e-34 148.3 110 66.4
BolC2t11912H Brassica oleracea HOM05D004151 ORTHO05D004775 1.3e-31 140.6 127 61.4
C09p58800 Brassica napus HOM05D004151 ORTHO05D004775 4.2e-30 135.6 80 76.2
BraA10t42874Z Brassica rapa HOM05D004151 ORTHO05D004775 2.5e-27 126.3 100 67.0
unitig_744.g24550 Utricularia gibba HOM05D004151 ORTHO05D004775 5.7e-27 125.2 60 96.7
PRCOL_00005119 Prasinoderma coloniale HOM05D005848 ORTHO05D007532 5.3e-25 118.6 76 64.5
C02p58510 Brassica napus HOM05D004151 ORTHO05D004775 3.8e-23 112.5 93 61.3
Actinidia30553 Actinidia chinensis HOM05D004151 ORTHO05D004775 1.9e-22 110.2 57 91.2
Haze_27090 Corylus avellana HOM05D000590 ORTHO05D004775 2.0e-19 100.1 94 48.9
Zm00001eb274230 Zea mays HOM05D004151 ORTHO05D004775 2.2e-18 96.7 49 85.7
HanXRQChr05g0143841 Helianthus annuus HOM05D004151 ORTHO05D004775 8.2e-18 94.7 107 47.7
Oeu035726.1 Olea europaea HOM05D004151 ORTHO05D004775 8.2e-18 94.7 59 76.3
Oeu035720.1 Olea europaea HOM05D004151 ORTHO05D004775 3.1e-17 92.8 59 74.6
Atru.chr6.7 Acer truncatum HOM05D004151 ORTHO05D004775 5.2e-12 75.5 46 78.3
Atru.chr10.1764 Acer truncatum HOM05D004151 ORTHO05D004775 1.5e-11 73.9 46 78.3
Atru.chr5.2304 Acer truncatum HOM05D004151 ORTHO05D004775 1.5e-11 73.9 46 78.3
Atru.chr13.534 Acer truncatum HOM05D004151 ORTHO05D004775 1.3e-10 70.9 46 76.1
Atru.chr2.3197 Acer truncatum HOM05D004151 ORTHO05D004775 1.3e-10 70.9 46 76.1
Atru.chr4.2011 Acer truncatum HOM05D004151 ORTHO05D004775 1.3e-10 70.9 46 76.1
BcaB08g36698 Brassica carinata HOM05D004151 ORTHO05D004775 1.1e-09 67.8 41 78.0
BolC9t58722H Brassica oleracea HOM05D004151 ORTHO05D004775 4.5e-08 62.4 40 77.5
ECA246G0128 Erigeron canadensis HOM05D001659 ORTHO05D001659 9.4e-06 54.7 35 68.6


User provided reference genes

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