Gene: TPR.G5895

General Information

Structural Information

  • Species Trifolium pratense
  • Gene Identifier TPR.G5895
  • Transcript Identifier TPR.T6096
  • Gene Type Coding gene
  • Location Tp57577_TGAC_v2_LG6 : 13278248-13279863 : positive

Gene Family Information

  • ID HOM05D004151
  • #Genes/#Species 170/94
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid Tp57577_TGAC_v2_mRNA6096.v2
  • id Tp57577_TGAC_v2_gene5895.v2
  • pacid 35975286
  • uniprot A0A2K3MXM9

Descriptions

  • Loading (ortholog descriptions from ath)...

Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0001522
IEA
GOA Databasepseudouridine synthesis
GO:0001522
IEA
InterPropseudouridine synthesis
GO:0042254
IEA
GOA Databaseribosome biogenesis
GO:0042254
IEA
InterProribosome biogenesis
GO:0006364
IEA
GOA DatabaserRNA processing

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0003723
IEA
GOA DatabaseRNA binding
GO:0003729
ISO
PLAZA Integrative OrthologymRNA binding AT3G03920

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005730
IEA
GOA Databasenucleolus
GO:0005634
IEA
GOA Databasenucleus
GO:0009535
ISO
PLAZA Integrative Orthologychloroplast thylakoid membrane AT5G18180

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR038664 H/ACA RNP complex subunit Gar1/Naf1, Cbf5-binding domain
IPR009000 Translation protein, beta-barrel domain superfamily
IPR007504 H/ACA ribonucleoprotein complex, subunit Gar1/Naf1
Mapman id Description
17.1.1.2.2.1.2 Protein biosynthesis.ribosome biogenesis.rRNA biosynthesis.post-transcriptional rRNA modification.pseudouridylation.H/ACA small nucleolar ribonucleoprotein (snoRNP) rRNA pseudouridylation complex.core component Gar1