Gene: Carub.0003s0316

General Information

Structural Information

  • Species Capsella rubella
  • Gene Identifier Carub.0003s0316
  • Transcript Identifier Carub.0003s0316.1
  • Gene Type Coding gene
  • Location scaffold_3 : 1035341-1036521 : negative

Gene Family Information

  • ID HOM05D004151
  • #Genes/#Species 170/94
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • id Carub.0003s0316.v1.1
  • pacid 39242532
  • synonym Carubv10014679m.g

Descriptions

  • Description K11128 - H/ACA ribonucleoprotein complex subunit 1 (GAR1, NOLA1)
  • Loading (ortholog descriptions from ath)...

Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0001522
IEA
InterPropseudouridine synthesis
GO:0042254
IEA
InterProribosome biogenesis

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0003729
ISO
PLAZA Integrative OrthologymRNA binding AT3G03920

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005730
ISO
PLAZA Integrative Orthologynucleolus AT3G03920
GO:0009535
ISO
PLAZA Integrative Orthologychloroplast thylakoid membrane AT3G03920

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR009000 Translation protein, beta-barrel domain superfamily
IPR007504 H/ACA ribonucleoprotein complex, subunit Gar1/Naf1
IPR038664 H/ACA RNP complex subunit Gar1/Naf1, Cbf5-binding domain
Mapman id Description
17.1.1.2.2.1.2 Protein biosynthesis.ribosome biogenesis.rRNA biosynthesis.post-transcriptional rRNA modification.pseudouridylation.H/ACA small nucleolar ribonucleoprotein (snoRNP) rRNA pseudouridylation complex.core component Gar1