Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.018G151300 Populus trichocarpa HOM05D006136 ORTHO05D007244 0.0e+00 1130.2 615 100.0
Sabra18G0127000 Salix brachista HOM05D006136 ORTHO05D007244 3.4e-280 968.0 574 89.0
Manes.11G052190 Manihot esculenta HOM05D006136 ORTHO05D007244 5.4e-116 422.5 590 46.4
Manes.02G224001 Manihot esculenta HOM05D006136 ORTHO05D007244 7.8e-115 418.7 590 46.3
Cfa012873 Carpinus fangiana HOM05D006136 ORTHO05D007244 1.0e-98 365.2 649 42.1
QL05p072260 Quercus lobata HOM05D000321 ORTHO05D007244 1.9e-97 360.9 621 41.2
QL11p005727 Quercus lobata HOM05D006136 ORTHO05D007244 1.4e-95 354.8 782 35.5
GSVIVG01038350001 Vitis vinifera HOM05D006136 ORTHO05D007244 2.0e-94 350.9 611 41.6
CiPaw.07G237600 Carya illinoinensis HOM05D006136 ORTHO05D007244 2.4e-92 344.0 636 40.3
TWI32G0914 Tripterygium wilfordii HOM05D006136 ORTHO05D007244 4.6e-91 339.7 668 37.4
CSS0003139 Camellia sinensis var. sinensis HOM05D006136 ORTHO05D007244 1.5e-89 334.7 618 40.3
Cpa.g.sc46.113 Carica papaya HOM05D006136 ORTHO05D007244 3.1e-87 327.0 766 35.5
Dinv12632 Davidia involucrata HOM05D006136 ORTHO05D002774 5.8e-86 322.8 603 39.3
Thecc.09G202200 Theobroma cacao HOM05D006136 ORTHO05D007244 2.4e-84 317.4 694 36.3
TAR626G0660 Trochodendron aralioides HOM05D006136 ORTHO05D007244 2.4e-84 317.4 626 37.7
Glyma.09G084800 Glycine max HOM05D006136 ORTHO05D007244 2.7e-83 313.9 625 40.2
Phvul.009G217200 Phaseolus vulgaris HOM05D006136 ORTHO05D007244 3.9e-82 310.1 645 38.0
Gohir.D08G026500 Gossypium hirsutum HOM05D006136 ORTHO05D007244 1.5e-81 308.1 696 35.3
Gorai.004G023000 Gossypium raimondii HOM05D006136 ORTHO05D007244 1.5e-81 308.1 696 35.3
Atru.chr7.1014 Acer truncatum HOM05D006136 ORTHO05D007244 1.2e-80 305.1 794 34.5
Oeu000955.1 Olea europaea HOM05D006136 ORTHO05D007244 6.2e-80 302.8 600 37.3
Gohir.A08G016500 Gossypium hirsutum HOM05D006136 ORTHO05D007244 2.4e-79 300.8 697 35.3
Prupe.1G000700 Prunus persica HOM05D006136 ORTHO05D007244 3.4e-78 297.0 645 37.2
COL.COLO4_09001 Corchorus olitorius HOM05D006136 ORTHO05D007244 4.9e-77 293.1 721 34.5
CSS0019621 Camellia sinensis var. sinensis HOM05D006136 ORTHO05D007244 7.1e-76 289.3 488 40.4
Glyma.15G193100 Glycine max HOM05D006136 ORTHO05D007244 1.7e-74 284.6 635 37.0
Lj9A583T57 Lonicera japonica HOM05D006136 ORTHO05D007244 1.7e-74 284.6 708 33.8
Haze_21244 Corylus avellana HOM05D006136 ORTHO05D007244 3.0e-74 283.9 584 38.9
Duzib170G0744 Durio zibethinus HOM05D006136 ORTHO05D007244 1.1e-73 282.0 706 34.4
Ciclev10007497m.g Citrus clementina HOM05D006136 ORTHO05D007244 1.9e-73 281.2 794 32.7
Lj6g0010551 Lotus japonicus HOM05D006136 ORTHO05D007244 1.3e-72 278.5 699 34.5
Cc06_g23510 Coffea canephora HOM05D006136 ORTHO05D007244 1.4e-71 275.0 590 37.5
arahy.Tifrunner.gnm1.ann1.46MDAV Arachis hypogaea HOM05D006136 ORTHO05D007244 4.0e-71 273.5 630 34.9
Ca_02520_v3 Cicer arietinum L. HOM05D006136 ORTHO05D007244 6.9e-71 272.7 579 37.3
Eucgr.C02149 Eucalyptus grandis HOM05D006136 ORTHO05D007244 9.0e-71 272.3 692 33.5
MBI16_g40727_MAGBIO Magnolia biondii HOM05D006136 ORTHO05D007244 1.5e-70 271.6 612 35.8
Lalb_Chr08g0233201 Lupinus albus HOM05D006136 ORTHO05D007244 7.6e-70 269.2 665 34.6
RcHm_v2.0_Chr4g0384741 Rosa chinensis HOM05D006136 ORTHO05D007244 7.6e-70 269.2 688 33.6
MSTRG.26507 Avicennia marina HOM05D006136 ORTHO05D007244 1.3e-69 268.5 636 34.4
Psat1g019160 Pisum sativum HOM05D006136 ORTHO05D007244 1.4e-68 265.0 705 33.0
SalBow5G5580 Salvia bowleyana HOM05D006136 ORTHO05D007244 1.2e-67 261.9 683 31.9
EL10Ac2g03821 Beta vulgaris HOM05D006136 ORTHO05D007244 2.7e-67 260.8 673 33.6
Peaxi162Scf00474g00018 Petunia axillaris HOM05D006136 ORTHO05D007244 2.7e-67 260.8 681 34.2
ClCG03G011600 Citrullus lanatus HOM05D006136 ORTHO05D007244 6.0e-67 259.6 682 32.4
Rhsim08G0117200 Rhododendron simsii HOM05D006136 ORTHO05D007244 1.0e-66 258.8 712 32.9
MELO3C010014.2 Cucumis melo HOM05D006136 ORTHO05D007244 5.1e-66 256.5 671 32.2
VMungo1309G0146 Vigna mungo HOM05D006136 ORTHO05D007244 5.1e-66 256.5 646 35.1
vmacro17832 Vaccinium macrocarpon HOM05D006136 ORTHO05D007244 1.1e-65 255.4 676 33.0
FAN17G2087 Fragaria x ananassa HOM05D006136 ORTHO05D007244 9.6e-65 252.3 697 32.7
Nitab4.5_0000807g0150 Nicotiana tabacum HOM05D006136 ORTHO05D007244 1.6e-64 251.5 780 30.3
PGSC0003DMG400013541 Solanum tuberosum HOM05D006136 ORTHO05D007244 2.8e-64 250.8 722 31.9
PSO478G4925 Papaver somniferum HOM05D006136 ORTHO05D007244 2.4e-63 247.7 538 35.5
PSO782G1690 Papaver somniferum HOM05D006136 ORTHO05D007244 3.4e-62 243.8 538 35.5
CsaV3_1G044190 Cucumis sativus L. HOM05D006136 ORTHO05D007244 9.9e-62 242.3 677 30.3
FAN12G0507 Fragaria x ananassa HOM05D006136 ORTHO05D007244 1.7e-61 241.5 679 32.1
Zm00001eb209220 Zea mays HOM05D006136 ORTHO05D007244 2.2e-61 241.1 587 32.4
Nn5g26953 Nelumbo nucifera HOM05D006136 ORTHO05D007244 8.4e-61 239.2 506 37.0
AUR62009114 Chenopodium quinoa HOM05D000163 ORTHO05D007244 1.1e-60 238.8 741 32.4
DCAR_020445 Daucus carota HOM05D006136 ORTHO05D002774 4.2e-60 236.9 702 30.6
Aqoxy7G02564 Aquilegia oxysepala HOM05D006136 ORTHO05D007244 1.2e-59 235.3 498 35.9
MD04G1000700 Malus domestica HOM05D006136 ORTHO05D007244 2.7e-59 234.2 732 30.9
Medtr2g048340 Medicago truncatula HOM05D006136 ORTHO05D007244 7.9e-59 232.6 685 32.3
Actinidia33603 Actinidia chinensis HOM05D006136 ORTHO05D007244 1.0e-58 232.3 325 45.5
PGR044G0474 Punica granatum HOM05D006136 ORTHO05D007244 1.0e-58 232.3 658 31.0
CANSAT01G2594 Cannabis sativa HOM05D006136 ORTHO05D007244 1.3e-58 231.9 665 31.6
Lsat_1_v5_gn_5_82020 Lactuca sativa HOM05D006136 ORTHO05D007244 3.0e-58 230.7 591 33.8
AUR62039148 Chenopodium quinoa HOM05D006136 ORTHO05D007244 4.8e-56 223.4 730 31.0
Sopen07g022390 Solanum pennellii HOM05D006136 ORTHO05D007244 6.2e-56 223.0 271 47.2
Sc06g0001020 Simmondsia chinensis HOM05D006136 ORTHO05D007244 3.1e-55 220.7 729 29.6
Os02g0138200 Oryza sativa ssp. japonica HOM05D006136 ORTHO05D007244 9.0e-55 219.2 587 30.5
Migut.L01610 Erythranthe guttata HOM05D006136 ORTHO05D007244 7.6e-54 216.1 712 29.8
ATR0626G098 Amborella trichopoda HOM05D006136 ORTHO05D007244 2.2e-53 214.5 606 31.0
ECA234G2139 Erigeron canadensis HOM05D006136 ORTHO05D007244 2.2e-53 214.5 709 30.7
HanXRQChr10g0309281 Helianthus annuus HOM05D006136 ORTHO05D007244 8.4e-53 212.6 683 30.6
Nitab4.5_0000170g0140 Nicotiana tabacum HOM05D006136 ORTHO05D007244 8.4e-53 212.6 751 29.6
Thhalv10012942m.g Eutrema salsugineum HOM05D006136 ORTHO05D007244 1.1e-52 212.2 670 31.2
FAN12G3399 Fragaria x ananassa HOM05D006136 ORTHO05D007244 2.1e-51 208.0 446 35.2
CARHR271930 Cardamine hirsuta HOM05D006136 ORTHO05D007244 2.3e-50 204.5 780 27.3
Aa31LG3G13960 Aethionema arabicum HOM05D006136 ORTHO05D007244 3.9e-50 203.8 499 34.1
THA.LOC104803376 Tarenaya hassleriana HOM05D006136 ORTHO05D007244 3.9e-50 203.8 734 29.7
HPP92_017041 Vanilla planifolia HOM05D006136 ORTHO05D007244 6.7e-50 203.0 571 29.9
Sp6g19810 Schrenkiella parvula HOM05D006136 ORTHO05D007244 1.9e-49 201.4 687 30.7
Carub.0008s1868 Capsella rubella HOM05D006136 ORTHO05D007244 2.5e-49 201.1 464 35.3
unitig_699.g19255 Utricularia gibba HOM05D006136 ORTHO05D007244 1.3e-48 198.7 271 44.6
AL8G34230 Arabidopsis lyrata HOM05D006136 ORTHO05D007244 3.7e-48 197.2 787 27.4
AT5G58130 Arabidopsis thaliana HOM05D006136 ORTHO05D007244 1.2e-46 192.2 807 26.5
A10p16060 Brassica napus HOM05D006136 ORTHO05D007244 6.5e-45 186.4 465 33.8
FAN22G1396 Fragaria x ananassa HOM05D006136 ORTHO05D007244 1.1e-44 185.7 603 30.2
BraA10t43623Z Brassica rapa HOM05D006136 ORTHO05D007244 2.5e-44 184.5 465 33.5
C09p50030 Brassica napus HOM05D006136 ORTHO05D007244 3.2e-44 184.1 735 28.3
BolC9t57856H Brassica oleracea HOM05D006136 ORTHO05D007244 7.2e-44 183.0 735 28.2
BcaB08g36165 Brassica carinata HOM05D006136 ORTHO05D007244 9.4e-44 182.6 467 33.0
BcaC04g19905 Brassica carinata HOM05D006136 ORTHO05D007244 3.6e-43 180.6 735 27.5
RcHm_v2.0_Chr5g0003141 Rosa chinensis HOM05D006136 ORTHO05D007244 7.9e-43 179.5 614 29.8
SGA_v2.0_scaffold21G09584 Striga asiatica HOM05D006136 ORTHO05D007244 1.1e-41 175.6 631 29.2
PGR044G0304 Punica granatum HOM05D006136 ORTHO05D007244 1.1e-39 169.1 597 30.8
CDE05G3219 Ceratophyllum demersum HOM05D006136 ORTHO05D007244 2.0e-38 164.9 508 29.1
GSVIVG01038333001 Vitis vinifera HOM05D006136 ORTHO05D007244 3.2e-36 157.5 199 47.7
SEGI_05126 Sequoiadendron giganteum HOM05D006136 ORTHO05D007244 1.8e-34 151.8 231 42.4
TPR.G18712 Trifolium pratense HOM05D006136 ORTHO05D007244 3.3e-33 147.5 633 27.2
Solyc07g042740.3 Solanum lycopersicum HOM05D006136 ORTHO05D007244 2.2e-32 144.8 206 41.7
Lj1g0026291 Lotus japonicus HOM05D006136 ORTHO05D007244 6.1e-27 126.7 313 33.9
arahy.Tifrunner.gnm1.ann1.27MYTD Arachis hypogaea HOM05D006136 ORTHO05D007244 5.7e-25 120.2 151 46.4
SMO367G1245 Selaginella moellendorffii HOM05D006136 ORTHO05D007244 7.4e-25 119.8 187 41.7
arahy.Tifrunner.gnm1.ann1.QC7K1D Arachis hypogaea HOM05D006136 ORTHO05D007244 1.4e-23 115.5 96 60.4
arahy.Tifrunner.gnm1.ann1.Q88MA9 Arachis hypogaea HOM05D006136 ORTHO05D007244 1.2e-22 112.5 131 50.4
Mapoly0169s0023 Marchantia polymorpha HOM05D006136 ORTHO05D007244 1.7e-21 108.6 357 28.9
FvH4_4g00130 Fragaria vesca HOM05D006136 ORTHO05D007244 2.9e-21 107.8 201 38.3
AagrBONN_evm.TU.Sc2ySwM_228.2439 Anthoceros agrestis HOM05D006136 ORTHO05D007244 1.5e-20 105.5 181 38.1
Solyc07g042700.4 Solanum lycopersicum HOM05D006136 ORTHO05D007244 7.5e-17 93.2 156 41.7
Sed0020259 Sechium edule HOM05D006136 ORTHO05D007244 4.8e-16 90.5 469 26.0
Nitab4.5_0002310g0140 Nicotiana tabacum HOM05D006136 ORTHO05D007244 6.3e-16 90.1 213 34.7
Pp3c1_8430 Physcomitrium patens HOM05D006136 ORTHO05D007244 1.1e-15 89.4 106 45.3
Glyma.07G231200 Glycine max HOM05D003235 ORTHO05D007244 2.0e-14 85.1 77 51.9
arahy.Tifrunner.gnm1.ann1.SWI1TY Arachis hypogaea HOM05D006136 ORTHO05D007244 2.7e-14 84.7 121 43.8
VMungo1309G2339 Vigna mungo HOM05D006136 ORTHO05D007244 1.9e-12 78.6 180 31.7
CBR_g39420 Chara braunii HOM05D006136 ORTHO05D007244 2.1e-11 75.1 177 33.3
Hund03317 Selenicereus undatus HOM05D006136 ORTHO05D007244 1.2e-09 69.3 496 25.4
Hma1.2p1_2895F.1_g329976 Hydrangea macrophylla HOM05D006136 ORTHO05D007244 9.8e-09 66.2 65 52.3
Lsat_1_v5_gn_5_81880 Lactuca sativa HOM05D006136 ORTHO05D007244 1.7e-08 65.5 177 29.9
BcaC03g14120 Brassica carinata HOM05D009052 ORTHO05D011796 6.3e-08 63.5 78 51.3
TPR.G20669 Trifolium pratense HOM05D006136 ORTHO05D007244 6.3e-08 63.5 75 53.3
C02p13590 Brassica napus HOM05D006136 ORTHO05D007244 9.1e-07 59.7 78 50.0
BolC2t07471H Brassica oleracea HOM05D006136 ORTHO05D007244 9.1e-07 59.7 78 50.0


User provided reference genes

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