Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.017G092600 Populus trichocarpa HOM05D003939 ORTHO05D005979 0.0e+00 3511.9 1810 100.0
Sabra17G0081700 Salix brachista HOM05D003939 ORTHO05D005979 0.0e+00 3284.2 1872 91.9
Manes.01G097400 Manihot esculenta HOM05D003939 ORTHO05D005979 0.0e+00 2725.7 1823 78.8
Cfa007652 Carpinus fangiana HOM05D003939 ORTHO05D005979 0.0e+00 2597.0 1821 74.8
QL02p067905 Quercus lobata HOM05D003939 ORTHO05D005979 0.0e+00 2568.5 1817 74.0
Ciclev10010894m.g Citrus clementina HOM05D003939 ORTHO05D005979 0.0e+00 2540.0 1818 73.3
TWI60G0125 Tripterygium wilfordii HOM05D003939 ORTHO05D005979 0.0e+00 2534.2 1819 73.6
Thecc.04G092900 Theobroma cacao HOM05D003939 ORTHO05D005979 0.0e+00 2492.2 1818 72.4
Duzib264G0523 Durio zibethinus HOM05D003939 ORTHO05D005979 0.0e+00 2488.0 1810 72.8
Prupe.3G256700 Prunus persica HOM05D003939 ORTHO05D005979 0.0e+00 2484.9 1817 73.1
MD17G1057600 Malus domestica HOM05D003939 ORTHO05D005979 0.0e+00 2476.8 1830 72.2
GSVIVG01011514001 Vitis vinifera HOM05D003939 ORTHO05D005979 0.0e+00 2471.0 1807 73.0
Atru.chr8.419 Acer truncatum HOM05D003939 ORTHO05D005979 0.0e+00 2469.1 1702 76.1
CSS0011135 Camellia sinensis var. sinensis HOM05D003939 ORTHO05D005979 0.0e+00 2458.7 1808 72.6
COL.COLO4_21400 Corchorus olitorius HOM05D003939 ORTHO05D005979 0.0e+00 2443.3 1808 71.0
MD09G1064300 Malus domestica HOM05D003939 ORTHO05D005979 0.0e+00 2442.9 1830 71.5
Gorai.006G011000 Gossypium raimondii HOM05D003939 ORTHO05D005979 0.0e+00 2442.2 1824 70.5
Gohir.A09G010200 Gossypium hirsutum HOM05D003939 ORTHO05D005979 0.0e+00 2433.7 1822 70.7
Dinv33821 Davidia involucrata HOM05D003939 ORTHO05D005979 0.0e+00 2417.9 1741 72.4
RcHm_v2.0_Chr2g0166131 Rosa chinensis HOM05D003939 ORTHO05D005979 0.0e+00 2413.6 1831 70.2
CANSAT64G0725 Cannabis sativa HOM05D003939 ORTHO05D005979 0.0e+00 2396.7 1780 70.3
PGR083G1596 Punica granatum HOM05D003939 ORTHO05D005979 0.0e+00 2384.8 1832 69.5
FAN05G1397 Fragaria x ananassa HOM05D003939 ORTHO05D005979 0.0e+00 2374.0 1818 70.0
FvH4_6g47080 Fragaria vesca HOM05D003939 ORTHO05D005979 0.0e+00 2362.0 1818 69.7
FAN09G4101 Fragaria x ananassa HOM05D003939 ORTHO05D005979 0.0e+00 2360.5 1818 69.6
FAN02G0596 Fragaria x ananassa HOM05D003939 ORTHO05D005979 0.0e+00 2358.2 1819 69.6
Sed0008583 Sechium edule HOM05D003939 ORTHO05D005979 0.0e+00 2346.6 1806 68.5
Lalb_Chr06g0175001 Lupinus albus HOM05D003939 ORTHO05D005979 0.0e+00 2340.1 1776 70.1
Rhsim10G0043700 Rhododendron simsii HOM05D003939 ORTHO05D005979 0.0e+00 2330.8 1885 66.6
arahy.Tifrunner.gnm1.ann1.U2J8P8 Arachis hypogaea HOM05D003939 ORTHO05D005979 0.0e+00 2318.1 1788 69.2
Eucgr.J01370 Eucalyptus grandis HOM05D003939 ORTHO05D005979 0.0e+00 2314.3 1836 67.9
Nn3g17411 Nelumbo nucifera HOM05D003939 ORTHO05D005979 0.0e+00 2314.3 1825 67.3
Glyma.13G057300 Glycine max HOM05D003939 ORTHO05D005979 0.0e+00 2306.9 1767 69.5
arahy.Tifrunner.gnm1.ann1.HNPA74 Arachis hypogaea HOM05D003939 ORTHO05D005979 0.0e+00 2298.5 1823 68.0
FAN14G2443 Fragaria x ananassa HOM05D003939 ORTHO05D005979 0.0e+00 2298.5 1818 68.4
Duzib187G1101 Durio zibethinus HOM05D003939 ORTHO05D005979 0.0e+00 2293.5 1832 67.1
vmacro05651 Vaccinium macrocarpon HOM05D003939 ORTHO05D005979 0.0e+00 2288.8 1805 68.4
Medtr6g015060 Medicago truncatula HOM05D003939 ORTHO05D005979 0.0e+00 2286.9 1807 67.9
VMungo0464G1977 Vigna mungo HOM05D003939 ORTHO05D005979 0.0e+00 2284.2 1835 67.2
Lj2g0019419 Lotus japonicus HOM05D003939 ORTHO05D005979 0.0e+00 2277.3 1827 67.3
Phvul.004G035100 Phaseolus vulgaris HOM05D003939 ORTHO05D005979 0.0e+00 2270.7 1793 68.0
CsaV3_4G008740 Cucumis sativus L. HOM05D003939 ORTHO05D005979 0.0e+00 2269.2 1694 71.0
Cc07_g03930 Coffea canephora HOM05D003939 ORTHO05D005979 0.0e+00 2255.7 1823 67.0
THA.LOC104821002 Tarenaya hassleriana HOM05D003939 ORTHO05D005979 0.0e+00 2253.4 1818 66.1
DCAR_025422 Daucus carota HOM05D003939 ORTHO05D005979 0.0e+00 2239.2 1791 66.3
AL6G26400 Arabidopsis lyrata HOM05D003939 ORTHO05D005979 0.0e+00 2227.2 1814 65.2
AT5G15540 Arabidopsis thaliana HOM05D003939 ORTHO05D005979 0.0e+00 2218.7 1813 65.1
MSTRG.3009 Avicennia marina HOM05D003939 ORTHO05D005979 0.0e+00 2209.9 1813 65.1
Sp6g28560 Schrenkiella parvula HOM05D003939 ORTHO05D005979 0.0e+00 2207.9 1820 64.5
Migut.H00638 Erythranthe guttata HOM05D003939 ORTHO05D005979 0.0e+00 2207.2 1817 65.4
Sopen03g014250 Solanum pennellii HOM05D003939 ORTHO05D005979 0.0e+00 2203.3 1813 65.6
Ca_04301_v3 Cicer arietinum L. HOM05D003939 ORTHO05D005979 0.0e+00 2201.4 1690 69.2
Thhalv10012417m.g Eutrema salsugineum HOM05D003939 ORTHO05D005979 0.0e+00 2201.0 1864 63.8
AUR62018173 Chenopodium quinoa HOM05D003939 ORTHO05D005979 0.0e+00 2198.7 1802 65.1
Carub.0006s1371 Capsella rubella HOM05D003939 ORTHO05D005979 0.0e+00 2198.3 1814 64.7
SGA_v2.0_scaffold52G19175 Striga asiatica HOM05D003939 ORTHO05D005979 0.0e+00 2188.7 1815 64.1
AUR62042423 Chenopodium quinoa HOM05D003939 ORTHO05D005979 0.0e+00 2187.9 1757 66.2
C09p61660 Brassica napus HOM05D003939 ORTHO05D005979 0.0e+00 2182.9 1816 63.8
BolC9t59004H Brassica oleracea HOM05D003939 ORTHO05D005979 0.0e+00 2182.9 1816 63.8
CAN.G381.1 Capsicum annuum HOM05D003939 ORTHO05D005979 0.0e+00 2181.8 1815 65.2
C02p07770 Brassica napus HOM05D003939 ORTHO05D005979 0.0e+00 2169.4 1866 62.7
Aa31LG11G14050 Aethionema arabicum HOM05D003939 ORTHO05D005979 0.0e+00 2168.7 1833 63.8
A02p03080 Brassica napus HOM05D003939 ORTHO05D005979 0.0e+00 2167.5 1812 64.0
BolC2t06707H Brassica oleracea HOM05D003939 ORTHO05D005979 0.0e+00 2164.0 1822 63.6
A10p23410 Brassica napus HOM05D003939 ORTHO05D005979 0.0e+00 2162.5 1817 63.4
BraA10t44409Z Brassica rapa HOM05D003939 ORTHO05D005979 0.0e+00 2162.5 1817 63.4
BraA02t05278Z Brassica rapa HOM05D003939 ORTHO05D005979 0.0e+00 2155.6 1821 63.6
TPR.G10018 Trifolium pratense HOM05D003939 ORTHO05D005979 0.0e+00 2143.6 1752 65.8
Haze_14442 Corylus avellana HOM05D003939 ORTHO05D005979 0.0e+00 2141.7 1456 76.7
Aqoxy3G03594 Aquilegia oxysepala HOM05D003939 ORTHO05D005979 0.0e+00 2137.1 1783 64.3
MELO3C016065.2 Cucumis melo HOM05D003939 ORTHO05D005979 0.0e+00 2132.1 1828 65.0
ECA246G3607 Erigeron canadensis HOM05D003939 ORTHO05D005979 0.0e+00 2127.4 1827 62.5
PSO013G0104 Papaver somniferum HOM05D003939 ORTHO05D005979 0.0e+00 2124.7 1834 62.3
Actinidia01988 Actinidia chinensis HOM05D003939 ORTHO05D005979 0.0e+00 2120.9 1533 73.1
Sc10g0004620 Simmondsia chinensis HOM05D003939 ORTHO05D005979 0.0e+00 2119.7 1599 70.2
Solyc03g059420.4 Solanum lycopersicum HOM05D003939 ORTHO05D005979 0.0e+00 2119.4 1736 65.5
Hund13156 Selenicereus undatus HOM05D003939 ORTHO05D005979 0.0e+00 2117.4 1875 62.3
Lsat_1_v5_gn_3_98161 Lactuca sativa HOM05D003939 ORTHO05D005979 0.0e+00 2084.3 1879 60.2
EL10Ac2g03123 Beta vulgaris HOM05D003939 ORTHO05D005979 0.0e+00 2078.1 1793 63.1
ClCG07G007360 Citrullus lanatus HOM05D003939 ORTHO05D005979 0.0e+00 2076.2 1493 72.8
Nitab4.5_0002960g0010 Nicotiana tabacum HOM05D003939 ORTHO05D005979 0.0e+00 2057.3 1719 64.7
HanXRQChr17g0546541 Helianthus annuus HOM05D003939 ORTHO05D005979 0.0e+00 2023.4 1837 60.1
Ah.10g032070 Amaranthus hybridus HOM05D003939 ORTHO05D005979 0.0e+00 2008.8 1877 59.9
MBI19_g03793_MAGBIO Magnolia biondii HOM05D003939 ORTHO05D005979 0.0e+00 2006.5 1557 67.9
SHI25772 Sapria himalayana HOM05D003939 ORTHO05D005979 0.0e+00 2005.7 1729 63.0
Peaxi162Scf00451g00326 Petunia axillaris HOM05D003939 ORTHO05D005979 0.0e+00 1994.2 1603 66.3
Psat1g067400 Pisum sativum HOM05D003939 ORTHO05D005979 0.0e+00 1985.3 1868 59.7
Lju41A4T71 Lonicera japonica HOM05D003939 ORTHO05D005979 0.0e+00 1928.3 1531 67.5
Nitab4.5_0001637g0010 Nicotiana tabacum HOM05D003939 ORTHO05D005979 0.0e+00 1895.9 1713 61.1
Gohir.D09G009300 Gossypium hirsutum HOM05D003939 ORTHO05D005979 0.0e+00 1823.9 1356 70.6
ATR0064G076 Amborella trichopoda HOM05D003939 ORTHO05D005979 0.0e+00 1741.9 1573 59.4
Zm00001eb298600 Zea mays HOM05D003939 ORTHO05D005979 0.0e+00 1691.4 1843 52.9
Zm00001eb118180 Zea mays HOM05D003939 ORTHO05D005979 0.0e+00 1679.8 1672 55.7
PSO063G3321 Papaver somniferum HOM05D003939 ORTHO05D005979 0.0e+00 1537.7 1399 59.5
Mapoly0011s0050 Marchantia polymorpha HOM05D003939 ORTHO05D005979 0.0e+00 1486.1 1817 46.7
Pp3c15_14600 Physcomitrium patens HOM05D003939 ORTHO05D005979 0.0e+00 1425.6 1797 46.4
AagrBONN_evm.TU.Sc2ySwM_344.3096 Anthoceros agrestis HOM05D003939 ORTHO05D005979 0.0e+00 1354.7 1749 45.2
TAR371G0557 Trochodendron aralioides HOM05D003939 ORTHO05D005979 0.0e+00 1350.9 997 72.9
SMO116G0168 Selaginella moellendorffii HOM05D003939 ORTHO05D005979 0.0e+00 1345.9 1776 45.6
Glyma.19G029100 Glycine max HOM05D003939 ORTHO05D005979 0.0e+00 1335.1 1003 70.5
Oeu007060.1 Olea europaea HOM05D003939 ORTHO05D005979 0.0e+00 1300.0 1219 59.4
SEGI_00927 Sequoiadendron giganteum HOM05D003939 ORTHO05D005979 0.0e+00 1103.2 1098 54.3
HPP92_012299 Vanilla planifolia HOM05D003939 ORTHO05D005979 0.0e+00 1092.4 971 60.4
CBR_g19320 Chara braunii HOM05D003939 ORTHO05D005979 1.7e-298 1030.4 1582 40.5
Os07g0110400 Oryza sativa ssp. japonica HOM05D003939 ORTHO05D005979 2.6e-296 1023.1 923 60.5
TAR371G1006 Trochodendron aralioides HOM05D003939 ORTHO05D005979 8.6e-271 938.3 797 63.1
CARHR197770 Cardamine hirsuta HOM05D003939 ORTHO05D005979 8.6e-263 911.8 644 71.6
CiPaw.03G089600 Carya illinoinensis HOM05D003939 ORTHO05D005979 8.6e-263 911.8 661 72.3
HPP92_012253 Vanilla planifolia HOM05D003939 ORTHO05D005979 2.9e-210 737.3 887 48.9
Psat0s5863g0080 Pisum sativum HOM05D003939 ORTHO05D005979 8.2e-189 666.0 520 67.7
HPP92_012298 Vanilla planifolia HOM05D003939 ORTHO05D005979 5.9e-179 633.3 731 49.7
Cpa.g.sc2744.1 Carica papaya HOM05D003939 ORTHO05D005979 3.0e-175 620.9 437 73.5
Glyma.19G029000 Glycine max HOM05D003939 ORTHO05D005979 9.1e-172 609.4 520 64.0
CSS0005126 Camellia sinensis var. sinensis HOM05D003939 ORTHO05D005979 6.1e-152 543.5 507 60.9
PGSC0003DMG400012376 Solanum tuberosum HOM05D003939 ORTHO05D005979 3.7e-149 534.3 500 60.0
Gohir.1Z049344 Gossypium hirsutum HOM05D003939 ORTHO05D005979 1.9e-145 521.9 422 66.4
SEGI_06328 Sequoiadendron giganteum HOM05D003939 ORTHO05D005979 2.2e-141 508.4 521 53.2
DCAR_026524 Daucus carota HOM05D003939 ORTHO05D005979 1.6e-139 502.3 558 53.4
CDE04G2810 Ceratophyllum demersum HOM05D003939 ORTHO05D005979 5.8e-134 483.8 497 54.9
CSS0039149 Camellia sinensis var. sinensis HOM05D003939 ORTHO05D005979 5.4e-124 450.7 479 56.2
Hma1.2p1_0481F.1_g162010 Hydrangea macrophylla HOM05D003939 ORTHO05D005979 3.1e-111 408.3 394 60.2
Prupe.2G279500 Prunus persica HOM05D003939 ORTHO05D005979 5.3e-111 407.5 429 55.2
Cpa.g.sc14.167 Carica papaya HOM05D003939 ORTHO05D005979 3.5e-107 394.8 264 77.7
HPP92_012254 Vanilla planifolia HOM05D003939 ORTHO05D005979 4.8e-104 384.4 323 61.9
SEGI_04445 Sequoiadendron giganteum HOM05D003939 ORTHO05D005979 3.5e-99 368.2 283 65.7
SEGI_32509 Sequoiadendron giganteum HOM05D003939 ORTHO05D005979 1.6e-96 359.4 351 54.7
Psat0s5863g0040 Pisum sativum HOM05D003939 ORTHO05D005979 6.7e-90 337.4 357 55.7
Cre06.g278269 Chlamydomonas reinhardtii HOM05D003939 ORTHO05D005979 4.5e-78 298.1 1777 23.3
ClCG07G007370 Citrullus lanatus HOM05D003939 ORTHO05D005979 1.2e-70 273.5 284 53.5
Hma1.2p1_0481F.1_g162030 Hydrangea macrophylla HOM05D003939 ORTHO05D005979 8.3e-48 197.6 221 48.4
CiPaw.03G089700 Carya illinoinensis HOM05D003939 ORTHO05D005979 2.4e-47 196.1 216 55.6
Psat0s9359g0040 Pisum sativum HOM05D003939 ORTHO05D005979 2.4e-47 196.1 196 56.6
Lju41A4T72 Lonicera japonica HOM05D003939 ORTHO05D005979 5.0e-45 188.3 161 60.9
MCO01G540 Micromonas commoda HOM05D003939 ORTHO05D005979 5.0e-45 188.3 413 31.5
BolC9t58997H Brassica oleracea HOM05D003939 ORTHO05D005979 5.5e-44 184.9 120 78.3
HPP92_012255 Vanilla planifolia HOM05D003939 ORTHO05D005979 1.5e-41 176.8 439 31.0
CSS0004390 Camellia sinensis var. sinensis HOM05D003939 ORTHO05D005979 9.8e-41 174.1 269 46.5
CAN.G61.23 Capsicum annuum HOM05D003939 ORTHO05D005979 1.1e-31 144.1 116 56.9
MBI06_g03947_MAGBIO Magnolia biondii HOM05D003939 ORTHO05D013368 1.1e-31 144.1 135 54.8
Psat5g278520 Pisum sativum HOM05D003939 ORTHO05D030477 9.2e-31 141.0 98 71.4
Psat3g154360 Pisum sativum HOM05D003939 ORTHO05D030477 4.3e-28 132.1 96 69.8
Cpa.g.c43937 Carica papaya HOM05D003939 ORTHO05D005979 2.1e-27 129.8 70 91.4
Psat3g154320 Pisum sativum HOM05D003939 ORTHO05D030477 2.8e-27 129.4 97 68.0
Glyma.01G130950 Glycine max HOM05D003939 ORTHO05D005979 2.6e-25 122.9 98 67.3
MBI19_g03794_MAGBIO Magnolia biondii HOM05D003939 ORTHO05D013368 3.7e-24 119.0 208 41.8
C09p61570 Brassica napus HOM05D003939 ORTHO05D005979 1.4e-23 117.1 79 72.2
C09p61560 Brassica napus HOM05D003939 ORTHO05D013368 4.1e-23 115.5 127 52.0
arahy.Tifrunner.gnm1.ann1.HI697U Arachis hypogaea HOM05D001278 ORTHO05D005979 7.0e-23 114.8 88 70.5
MELO3C000805.2 Cucumis melo HOM05D003939 ORTHO05D005979 7.0e-23 114.8 90 67.8
Atru.chr8.420 Acer truncatum HOM05D003939 ORTHO05D013368 6.0e-22 111.7 85 70.6
Hma1.2p1_0481F.1_g162040 Hydrangea macrophylla HOM05D003939 ORTHO05D013368 1.7e-21 110.2 82 68.3
MELO3C001621.2 Cucumis melo HOM05D003939 ORTHO05D005979 1.5e-20 107.1 78 69.2
TPR.G3973 Trifolium pratense HOM05D003939 ORTHO05D005979 4.7e-19 102.1 194 35.1
arahy.Tifrunner.gnm1.ann1.BV8AZF Arachis hypogaea HOM05D001278 ORTHO05D004786 2.3e-18 99.8 70 74.3
Solyc03g059400.1 Solanum lycopersicum HOM05D003939 ORTHO05D013368 4.0e-18 99.0 85 61.2
Nitab4.5_0001637g0020 Nicotiana tabacum HOM05D003939 ORTHO05D013368 1.5e-17 97.1 106 50.9
Nitab4.5_0002960g0020 Nicotiana tabacum HOM05D003939 ORTHO05D013368 3.4e-17 95.9 83 60.2
TAR376G0271 Trochodendron aralioides HOM05D003939 ORTHO05D009412 2.2e-16 93.2 48 91.7
TAR629G0495 Trochodendron aralioides HOM05D003939 ORTHO05D005979 3.7e-16 92.4 59 76.3
TAR376G0356 Trochodendron aralioides HOM05D003939 ORTHO05D009412 6.4e-16 91.7 48 89.6
ATR0035G002 Amborella trichopoda HOM05D003939 ORTHO05D013368 7.8e-14 84.7 69 62.3
BolC9t58995H Brassica oleracea HOM05D003939 ORTHO05D013368 2.3e-13 83.2 91 54.9
ATR0064G012 Amborella trichopoda HOM05D003939 ORTHO05D013368 3.0e-13 82.8 69 60.9
ATR1045G001 Amborella trichopoda HOM05D003939 ORTHO05D013368 6.6e-13 81.6 88 52.3
MELO3C001721.2 Cucumis melo HOM05D003939 ORTHO05D005979 1.5e-12 80.5 61 67.2
PSO063G0192 Papaver somniferum HOM05D001862 ORTHO05D005979 9.6e-12 77.8 115 43.5
TAR629G2192 Trochodendron aralioides HOM05D003939 ORTHO05D013368 9.6e-12 77.8 94 50.0
SEGI_31617 Sequoiadendron giganteum HOM05D003939 ORTHO05D050928 1.6e-11 77.0 255 29.0
MBI19_g32131_MAGBIO Magnolia biondii HOM05D003939 ORTHO05D013368 2.8e-11 76.3 65 56.9
EL10Ac2g03124 Beta vulgaris HOM05D005544 ORTHO05D007303 1.1e-10 74.3 111 44.1
SEGI_38119 Sequoiadendron giganteum HOM05D003939 ORTHO05D050928 4.0e-10 72.4 153 28.1
Psat5g164760 Pisum sativum HOM05D003939 ORTHO05D005979 6.8e-10 71.6 48 77.1


User provided reference genes

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