Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.014G170300 Populus trichocarpa HOM05D006371 ORTHO05D008309 0.0e+00 1995.7 1009 100.0
Sabra14G0129800 Salix brachista HOM05D006371 ORTHO05D008309 0.0e+00 1907.9 1009 95.1
Manes.12G064500 Manihot esculenta HOM05D006371 ORTHO05D008309 0.0e+00 1405.6 948 74.9
Cfa014202 Carpinus fangiana HOM05D006371 ORTHO05D008309 0.0e+00 1289.2 991 67.5
QL04p067039 Quercus lobata HOM05D006371 ORTHO05D008309 0.0e+00 1288.9 956 69.4
CiPaw.03G283700 Carya illinoinensis HOM05D006371 ORTHO05D008309 0.0e+00 1285.0 955 69.2
Ciclev10014166m.g Citrus clementina HOM05D006371 ORTHO05D008309 0.0e+00 1274.6 940 70.6
TWI36G0955 Tripterygium wilfordii HOM05D006371 ORTHO05D008309 0.0e+00 1259.6 976 68.0
MD09G1130200 Malus domestica HOM05D006371 ORTHO05D008309 0.0e+00 1226.8 987 65.6
Gohir.A11G148000 Gossypium hirsutum HOM05D006371 ORTHO05D008309 0.0e+00 1218.8 999 66.0
Gorai.007G165100 Gossypium raimondii HOM05D006371 ORTHO05D008309 0.0e+00 1210.7 1000 66.3
Duzib211G0069 Durio zibethinus HOM05D006371 ORTHO05D008309 0.0e+00 1199.1 1006 64.8
Gohir.D11G154800 Gossypium hirsutum HOM05D006371 ORTHO05D008309 0.0e+00 1198.7 1011 65.4
Duzib133G1082 Durio zibethinus HOM05D006371 ORTHO05D008309 0.0e+00 1190.6 959 65.8
Prupe.3G194900 Prunus persica HOM05D006371 ORTHO05D008309 0.0e+00 1180.2 979 64.8
Nn1g07560 Nelumbo nucifera HOM05D006371 ORTHO05D008309 0.0e+00 1179.5 968 65.1
RcHm_v2.0_Chr2g0155641 Rosa chinensis HOM05D006371 ORTHO05D008309 0.0e+00 1178.7 1023 63.0
MELO3C024185.2 Cucumis melo HOM05D006371 ORTHO05D008309 0.0e+00 1169.5 938 65.5
FAN02G4613 Fragaria x ananassa HOM05D006371 ORTHO05D008309 0.0e+00 1169.5 989 64.5
Glyma.14G190200 Glycine max HOM05D006371 ORTHO05D008309 0.0e+00 1167.9 994 63.2
FAN14G0004 Fragaria x ananassa HOM05D006371 ORTHO05D008309 0.0e+00 1167.1 989 64.6
FAN05G5438 Fragaria x ananassa HOM05D006371 ORTHO05D008309 0.0e+00 1166.4 1026 63.0
FvH4_6g40410 Fragaria vesca HOM05D006371 ORTHO05D008309 0.0e+00 1165.6 989 64.5
CANSAT64G2089 Cannabis sativa HOM05D006371 ORTHO05D008309 0.0e+00 1162.9 959 64.9
FAN09G0519 Fragaria x ananassa HOM05D006371 ORTHO05D008309 0.0e+00 1161.7 973 64.9
arahy.Tifrunner.gnm1.ann1.BM1T67 Arachis hypogaea HOM05D006371 ORTHO05D008309 0.0e+00 1161.0 957 63.7
Glyma.02G223400 Glycine max HOM05D006371 ORTHO05D008309 0.0e+00 1159.8 997 62.4
arahy.Tifrunner.gnm1.ann1.YIC3VW Arachis hypogaea HOM05D006371 ORTHO05D008309 0.0e+00 1157.1 964 63.3
Thecc.01G199300 Theobroma cacao HOM05D006371 ORTHO05D008309 0.0e+00 1149.4 1005 62.9
PGR031G1410 Punica granatum HOM05D006371 ORTHO05D008309 0.0e+00 1148.3 942 65.2
Eucgr.A01367 Eucalyptus grandis HOM05D006371 ORTHO05D008309 0.0e+00 1146.0 958 64.2
CsaV3_2G010080 Cucumis sativus L. HOM05D006371 ORTHO05D008309 0.0e+00 1145.6 946 63.8
TAR627G0565 Trochodendron aralioides HOM05D006371 ORTHO05D008309 0.0e+00 1144.4 871 69.0
Lalb_Chr04g0252451 Lupinus albus HOM05D006371 ORTHO05D008309 0.0e+00 1131.3 960 63.6
PSO541G0072 Papaver somniferum HOM05D006371 ORTHO05D008309 0.0e+00 1127.1 975 63.2
PSO675G4792 Papaver somniferum HOM05D006371 ORTHO05D008309 0.0e+00 1125.5 962 63.4
GSVIVG01030124001 Vitis vinifera HOM05D006371 ORTHO05D008309 0.0e+00 1125.2 954 63.6
LjContig00155g0006571 Lotus japonicus HOM05D006371 ORTHO05D008309 0.0e+00 1112.4 996 61.0
Dinv40160 Davidia involucrata HOM05D006371 ORTHO05D008309 0.0e+00 1094.7 952 63.7
COL.COLO4_19652 Corchorus olitorius HOM05D006371 ORTHO05D008309 0.0e+00 1092.8 902 65.3
AL3G41970 Arabidopsis lyrata HOM05D006371 ORTHO05D008309 0.0e+00 1085.9 944 61.4
Thhalv10002385m.g Eutrema salsugineum HOM05D006371 ORTHO05D008309 0.0e+00 1084.7 945 61.7
Sp3g23150 Schrenkiella parvula HOM05D006371 ORTHO05D008309 0.0e+00 1083.9 945 61.7
BcaB06g26772 Brassica carinata HOM05D006371 ORTHO05D008309 0.0e+00 1081.2 944 61.7
Aqoxy3G02224 Aquilegia oxysepala HOM05D006371 ORTHO05D008309 0.0e+00 1077.8 945 61.8
Ca_05557_v3 Cicer arietinum L. HOM05D006371 ORTHO05D008309 0.0e+00 1075.1 993 57.8
CSS0032100 Camellia sinensis var. sinensis HOM05D006371 ORTHO05D008309 3.5e-311 1071.6 905 64.4
BraA07t28469Z Brassica rapa HOM05D006371 ORTHO05D008309 4.8e-311 1071.2 961 60.2
THA.LOC104808834 Tarenaya hassleriana HOM05D006371 ORTHO05D008309 1.8e-310 1069.3 971 60.4
BcaC06g35860 Brassica carinata HOM05D006371 ORTHO05D008309 5.2e-310 1067.8 946 60.9
CARHR102110 Cardamine hirsuta HOM05D006371 ORTHO05D008309 6.8e-310 1067.4 940 61.5
A07p06760 Brassica napus HOM05D006371 ORTHO05D008309 1.5e-309 1066.2 946 60.9
C07p10340 Brassica napus HOM05D006371 ORTHO05D008309 9.8e-309 1063.5 947 60.8
BolC7t41483H Brassica oleracea HOM05D006371 ORTHO05D008309 1.3e-308 1063.1 947 60.8
Aa31sc575G10 Aethionema arabicum HOM05D006371 ORTHO05D008309 3.2e-307 1058.5 946 61.1
Carub.0003s2599 Capsella rubella HOM05D006371 ORTHO05D008309 2.1e-306 1055.8 956 60.3
TPR.G13852 Trifolium pratense HOM05D006371 ORTHO05D008309 7.8e-306 1053.9 975 59.1
Dinv08538 Davidia involucrata HOM05D006371 ORTHO05D008309 4.3e-304 1048.1 850 66.0
Psat2g060760 Pisum sativum HOM05D006371 ORTHO05D008309 1.8e-302 1042.7 943 59.4
Actinidia02362 Actinidia chinensis HOM05D006371 ORTHO05D008309 3.7e-300 1035.0 984 58.8
Medtr5g069430 Medicago truncatula HOM05D006371 ORTHO05D008309 6.4e-300 1034.2 1035 55.7
ATR0751G221 Amborella trichopoda HOM05D006371 ORTHO05D008309 1.1e-296 1023.5 989 57.3
Sed0018275 Sechium edule HOM05D006371 ORTHO05D008309 3.5e-282 975.3 758 68.6
Lj4C228G6 Lonicera japonica HOM05D006371 ORTHO05D008309 4.2e-275 951.8 1018 53.9
Cc07_g11500 Coffea canephora HOM05D006371 ORTHO05D008309 6.7e-273 944.5 979 55.5
HPP92_003032 Vanilla planifolia HOM05D006371 ORTHO05D008309 6.9e-270 934.5 1003 51.6
MBI15_g38530_MAGBIO Magnolia biondii HOM05D006371 ORTHO05D008309 1.2e-261 907.1 774 62.4
Os08g0323600 Oryza sativa ssp. japonica HOM05D006371 ORTHO05D008309 1.0e-260 904.0 998 50.3
MSTRG.10896 Avicennia marina HOM05D006371 ORTHO05D008309 1.9e-259 899.8 762 67.2
Migut.D00896 Erythranthe guttata HOM05D006371 ORTHO05D008309 2.5e-259 899.4 788 64.1
AT2G04270 Arabidopsis thaliana HOM05D006371 ORTHO05D008309 5.5e-259 898.3 726 66.7
EL10Ac6g13348 Beta vulgaris HOM05D006371 ORTHO05D008309 2.5e-256 889.4 983 53.3
SalBow7G3887 Salvia bowleyana HOM05D006371 ORTHO05D008309 7.4e-256 887.9 769 65.0
Solyc02g083140.3 Solanum lycopersicum HOM05D006371 ORTHO05D008309 1.3e-255 887.1 987 52.4
ECA232G0409 Erigeron canadensis HOM05D006371 ORTHO05D008309 1.1e-254 884.0 913 55.5
Cpa.g.sc136.51 Carica papaya HOM05D006371 ORTHO05D008309 5.9e-253 878.2 595 75.6
PGSC0003DMG400001545 Solanum tuberosum HOM05D006371 ORTHO05D008309 3.8e-252 875.5 992 52.5
HanXRQChr09g0256951 Helianthus annuus HOM05D006371 ORTHO05D008309 2.5e-251 872.8 904 55.4
Sopen02g027900 Solanum pennellii HOM05D006371 ORTHO05D008309 3.2e-251 872.5 942 54.2
Atru.chr6.3429 Acer truncatum HOM05D006371 ORTHO05D008309 2.7e-250 869.4 677 65.3
Sc07g0001260 Simmondsia chinensis HOM05D006371 ORTHO05D008309 7.9e-250 867.8 965 52.7
Ah.02g129050 Amaranthus hybridus HOM05D006371 ORTHO05D008309 1.4e-249 867.1 756 64.0
ClCG02G003000 Citrullus lanatus HOM05D006371 ORTHO05D008309 6.7e-249 864.8 779 61.0
AUR62039632 Chenopodium quinoa HOM05D006371 ORTHO05D008309 2.6e-248 862.8 964 53.4
Peaxi162Scf00300g00515 Petunia axillaris HOM05D006371 ORTHO05D008309 2.6e-248 862.8 1011 51.1
CAN.G890.8 Capsicum annuum HOM05D006371 ORTHO05D008309 1.1e-246 857.4 686 65.7
Nitab4.5_0005413g0050 Nicotiana tabacum HOM05D006371 ORTHO05D008309 5.0e-244 848.6 939 53.4
Lsat_1_v5_gn_4_142580 Lactuca sativa HOM05D006371 ORTHO05D008309 3.2e-243 845.9 945 53.2
AUR62040011 Chenopodium quinoa HOM05D006371 ORTHO05D008309 1.8e-241 840.1 926 53.8
Phvul.008G190000 Phaseolus vulgaris HOM05D006371 ORTHO05D008309 2.2e-236 823.2 821 55.9
ECA238G3451 Erigeron canadensis HOM05D006371 ORTHO05D008309 5.0e-236 822.0 918 53.1
Haze_12588 Corylus avellana HOM05D006371 ORTHO05D008309 1.2e-232 810.8 653 63.9
Oeu049652.2 Olea europaea HOM05D006371 ORTHO05D008309 2.7e-226 789.6 1036 48.3
Hund03659 Selenicereus undatus HOM05D006371 ORTHO05D008309 1.5e-224 783.9 1002 47.6
Zm00001eb038720 Zea mays HOM05D006371 ORTHO05D008309 9.5e-219 764.6 805 54.8
CDE02G2282 Ceratophyllum demersum HOM05D006371 ORTHO05D008309 7.8e-213 745.0 758 55.0
Hma1.2p1_0315F.1_g122770 Hydrangea macrophylla HOM05D006371 ORTHO05D008309 1.7e-204 717.2 728 54.8
Hund03661 Selenicereus undatus HOM05D006371 ORTHO05D008309 1.5e-203 714.1 1025 45.8
SGA_v2.0_scaffold68G22808 Striga asiatica HOM05D006371 ORTHO05D008309 7.5e-200 701.8 777 52.9
unitig_748.g7080 Utricularia gibba HOM05D006371 ORTHO05D005825 3.7e-199 699.5 710 58.0
vmacro20507 Vaccinium macrocarpon HOM05D006371 ORTHO05D008309 1.7e-183 647.5 1054 41.8
DCAR_023137 Daucus carota HOM05D006371 ORTHO05D008309 5.1e-172 609.4 655 55.0
Mapoly0111s0056 Marchantia polymorpha HOM05D006371 ORTHO05D008309 1.9e-171 607.4 912 40.7
Nitab4.5_0023804g0010 Nicotiana tabacum HOM05D006371 ORTHO05D008309 1.1e-163 581.6 554 59.2
Rhsim10G0203500 Rhododendron simsii HOM05D006371 ORTHO05D008309 7.4e-163 578.9 1093 39.3
AagrBONN_evm.TU.Sc2ySwM_368.983 Anthoceros agrestis HOM05D006371 ORTHO05D008309 4.0e-153 546.6 926 38.9
Pp3c4_14910 Physcomitrium patens HOM05D006371 ORTHO05D008309 5.3e-145 519.6 742 41.8
SMO117G0275 Selaginella moellendorffii HOM05D006371 ORTHO05D008309 1.2e-120 438.7 571 44.7
Haze_12589 Corylus avellana HOM05D006371 ORTHO05D008309 1.6e-93 348.6 425 51.1
SEGI_21719 Sequoiadendron giganteum HOM05D006371 ORTHO05D008309 6.4e-66 256.9 208 62.5
AUR62026198 Chenopodium quinoa HOM05D006371 ORTHO05D008309 1.3e-63 249.2 244 54.9
Ca_28887_v3 Cicer arietinum L. HOM05D006371 ORTHO05D008309 2.6e-51 208.4 346 34.1
MD17G1105600 Malus domestica HOM05D006371 ORTHO05D008309 3.7e-45 188.0 197 57.9
MCO12G287 Micromonas commoda HOM05D006371 ORTHO05D008309 1.9e-41 175.6 327 34.6
SEGI_30134 Sequoiadendron giganteum HOM05D006371 ORTHO05D008309 2.7e-32 145.2 553 25.9
CBR_g28919 Chara braunii HOM05D006371 ORTHO05D000048 3.9e-23 114.8 123 48.8
MD17G1105400 Malus domestica HOM05D006371 ORTHO05D008309 2.2e-21 109.0 87 69.0
SEGI_19700 Sequoiadendron giganteum HOM05D006371 ORTHO05D008309 5.9e-19 100.9 74 66.2
CSS0035540 Camellia sinensis var. sinensis HOM05D006371 ORTHO05D008309 2.3e-15 89.0 87 47.1
CBR_g28910 Chara braunii HOM05D000019 ORTHO05D000048 5.1e-15 87.8 130 42.3
CBR_g28922 Chara braunii HOM05D000019 ORTHO05D000048 2.8e-13 82.0 270 27.8
AUR62026199 Chenopodium quinoa HOM05D000691 ORTHO05D000378 1.7e-10 72.8 71 59.2
FAN09G2267 Fragaria x ananassa HOM05D006371 ORTHO05D008309 2.2e-10 72.4 69 46.4
MD17G1105500 Malus domestica HOM05D006371 ORTHO05D008309 1.9e-09 69.3 41 85.4
AUR62026201 Chenopodium quinoa HOM05D006371 ORTHO05D008309 1.6e-08 66.2 94 45.7
Sc07g0006540 Simmondsia chinensis HOM05D003809 ORTHO05D003935 5.2e-07 61.2 73 35.6
PSO339G2972 Papaver somniferum HOM05D003809 ORTHO05D003935 2.0e-06 59.3 89 31.5
Duzib106G1511 Durio zibethinus HOM05D003809 ORTHO05D003935 9.7e-06 57.0 237 24.1
RcHm_v2.0_Chr3g0463311 Rosa chinensis HOM05D003809 ORTHO05D003935 9.7e-06 57.0 89 30.3


User provided reference genes

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