Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.014G165400 Populus trichocarpa HOM05D005707 ORTHO05D007276 0.0e+00 1924.4 963 100.0
Sabra14G0126000 Salix brachista HOM05D005707 ORTHO05D007276 0.0e+00 1855.1 963 96.3
Manes.13G062700 Manihot esculenta HOM05D005707 ORTHO05D007276 0.0e+00 1719.5 963 89.2
Haze_03608 Corylus avellana HOM05D005707 ORTHO05D007276 0.0e+00 1704.5 966 88.3
Manes.12G065301 Manihot esculenta HOM05D005707 ORTHO05D007276 0.0e+00 1703.0 963 89.2
Cfa007084 Carpinus fangiana HOM05D005707 ORTHO05D007276 0.0e+00 1700.3 964 88.4
Dinv07863 Davidia involucrata HOM05D005707 ORTHO05D007276 0.0e+00 1698.3 965 88.0
TAR626G1120 Trochodendron aralioides HOM05D005707 ORTHO05D007276 0.0e+00 1686.0 964 86.6
Prupe.3G200600 Prunus persica HOM05D005707 ORTHO05D007276 0.0e+00 1685.6 950 88.3
Gorai.007G166700 Gossypium raimondii HOM05D005707 ORTHO05D007276 0.0e+00 1684.5 964 87.8
Gohir.D11G156360 Gossypium hirsutum HOM05D005707 ORTHO05D007276 0.0e+00 1681.8 964 87.7
Gohir.A11G149550 Gossypium hirsutum HOM05D005707 ORTHO05D007276 0.0e+00 1679.5 964 87.2
PGR142G3494 Punica granatum HOM05D005707 ORTHO05D007276 0.0e+00 1679.5 963 86.6
MD17G1113900 Malus domestica HOM05D005707 ORTHO05D007276 0.0e+00 1678.3 952 87.7
MD09G1123500 Malus domestica HOM05D005707 ORTHO05D007276 0.0e+00 1672.5 952 87.9
CiPaw.07G002400 Carya illinoinensis HOM05D005707 ORTHO05D007276 0.0e+00 1670.6 964 87.4
Atru.BG.42.p Acer truncatum HOM05D005707 ORTHO05D007276 0.0e+00 1662.9 943 88.0
Duzib138G1526 Durio zibethinus HOM05D005707 ORTHO05D007276 0.0e+00 1662.9 964 86.6
CANSAT64G1567 Cannabis sativa HOM05D005707 ORTHO05D007276 0.0e+00 1662.5 963 86.4
Ciclev10018207m.g Citrus clementina HOM05D005707 ORTHO05D007276 0.0e+00 1659.0 963 86.3
RcHm_v2.0_Chr2g0156491 Rosa chinensis HOM05D005707 ORTHO05D007276 0.0e+00 1647.5 950 87.4
GSVIVG01030049001 Vitis vinifera HOM05D005707 ORTHO05D007276 0.0e+00 1647.5 964 86.5
Nn1g03422 Nelumbo nucifera HOM05D005707 ORTHO05D007276 0.0e+00 1647.1 963 84.1
ClCG02G009340 Citrullus lanatus HOM05D005707 ORTHO05D007276 0.0e+00 1645.6 963 84.7
TWI75G1501 Tripterygium wilfordii HOM05D005707 ORTHO05D007276 0.0e+00 1644.4 953 86.5
TWI18G1214 Tripterygium wilfordii HOM05D005707 ORTHO05D007276 0.0e+00 1642.5 954 86.3
QL06p053011 Quercus lobata HOM05D005707 ORTHO05D007276 0.0e+00 1642.1 973 86.0
FvH4_6g40910 Fragaria vesca HOM05D005707 ORTHO05D007276 0.0e+00 1637.9 950 87.1
FAN14G2372 Fragaria x ananassa HOM05D005707 ORTHO05D007276 0.0e+00 1636.7 950 86.9
CsaV3_6G009510 Cucumis sativus L. HOM05D005707 ORTHO05D007276 0.0e+00 1634.8 963 84.3
MELO3C025972.2 Cucumis melo HOM05D005707 ORTHO05D007276 0.0e+00 1634.0 963 84.4
Eucgr.A01050 Eucalyptus grandis HOM05D005707 ORTHO05D007276 0.0e+00 1634.0 952 85.5
FAN05G2777 Fragaria x ananassa HOM05D005707 ORTHO05D007276 0.0e+00 1634.0 950 87.1
Hma1.2p1_1267F.1_g271460 Hydrangea macrophylla HOM05D005707 ORTHO05D007276 0.0e+00 1634.0 945 85.9
FAN02G0692 Fragaria x ananassa HOM05D005707 ORTHO05D007276 0.0e+00 1627.8 950 86.5
FAN09G4573 Fragaria x ananassa HOM05D005707 ORTHO05D007276 0.0e+00 1619.4 950 86.0
Nn1g03246 Nelumbo nucifera HOM05D005707 ORTHO05D007276 0.0e+00 1619.4 963 82.7
CSS0003308 Camellia sinensis var. sinensis HOM05D005707 ORTHO05D007276 0.0e+00 1617.8 964 84.3
CSS0049316 Camellia sinensis var. sinensis HOM05D005707 ORTHO05D007276 0.0e+00 1617.8 964 84.3
Ca_27368_v3 Cicer arietinum L. HOM05D005707 ORTHO05D007276 0.0e+00 1612.4 974 83.2
Actinidia09778 Actinidia chinensis HOM05D005707 ORTHO05D007276 0.0e+00 1612.0 965 84.1
Aqoxy2G03044 Aquilegia oxysepala HOM05D005707 ORTHO05D007276 0.0e+00 1611.3 964 82.9
Lj1g0027558 Lotus japonicus HOM05D005707 ORTHO05D007276 0.0e+00 1610.1 972 83.4
arahy.Tifrunner.gnm1.ann1.T3MKLR Arachis hypogaea HOM05D005707 ORTHO05D007276 0.0e+00 1604.3 968 83.3
MBI16_g36319_MAGBIO Magnolia biondii HOM05D005707 ORTHO05D007276 0.0e+00 1604.3 965 83.4
Lj1C792T2 Lonicera japonica HOM05D005707 ORTHO05D007276 0.0e+00 1598.2 963 83.0
Phvul.010G042100 Phaseolus vulgaris HOM05D005707 ORTHO05D007276 0.0e+00 1597.8 970 82.8
Glyma.07G119500 Glycine max HOM05D005707 ORTHO05D007276 0.0e+00 1597.4 972 82.7
Sed0013138 Sechium edule HOM05D005707 ORTHO05D007276 0.0e+00 1595.5 963 83.1
Lj6g0020016 Lotus japonicus HOM05D005707 ORTHO05D007276 0.0e+00 1594.3 973 82.4
Rhsim06G0174400 Rhododendron simsii HOM05D005707 ORTHO05D007276 0.0e+00 1594.3 970 83.2
VMungo0331G1616 Vigna mungo HOM05D005707 ORTHO05D007276 0.0e+00 1593.9 970 82.4
Glyma.03G104400 Glycine max HOM05D005707 ORTHO05D007276 0.0e+00 1588.9 971 82.3
TPR.G3804 Trifolium pratense HOM05D005707 ORTHO05D007276 0.0e+00 1586.6 971 81.9
Lj8A134G73 Lonicera japonica HOM05D005707 ORTHO05D007276 0.0e+00 1584.3 964 82.3
THA.LOC104808851 Tarenaya hassleriana HOM05D005707 ORTHO05D007276 0.0e+00 1583.5 962 82.6
arahy.Tifrunner.gnm1.ann1.DQM4AF Arachis hypogaea HOM05D005707 ORTHO05D007276 0.0e+00 1580.8 1002 80.3
Nitab4.5_0001082g0050 Nicotiana tabacum HOM05D005707 ORTHO05D007276 0.0e+00 1573.9 966 81.9
Sed0020801 Sechium edule HOM05D005707 ORTHO05D007276 0.0e+00 1571.2 963 81.2
Medtr1g019500 Medicago truncatula HOM05D005707 ORTHO05D007276 0.0e+00 1569.7 975 80.9
Lalb_Chr19g0124221 Lupinus albus HOM05D005707 ORTHO05D007276 0.0e+00 1568.5 975 81.0
Sopen06g023670 Solanum pennellii HOM05D005707 ORTHO05D007276 0.0e+00 1561.6 963 80.9
A07p06540 Brassica napus HOM05D005707 ORTHO05D007276 0.0e+00 1561.2 945 82.1
PGSC0003DMG400026068 Solanum tuberosum HOM05D005707 ORTHO05D007276 0.0e+00 1561.2 961 81.2
Sp3g23690 Schrenkiella parvula HOM05D005707 ORTHO05D007276 0.0e+00 1560.8 945 82.0
SpUn0142_0010 Schrenkiella parvula HOM05D005707 ORTHO05D007276 0.0e+00 1560.8 945 82.0
Nitab4.5_0000303g0290 Nicotiana tabacum HOM05D005707 ORTHO05D007276 0.0e+00 1560.0 969 80.9
BraA07t28449Z Brassica rapa HOM05D005707 ORTHO05D007276 0.0e+00 1558.1 945 82.0
CAN.G308.64 Capsicum annuum HOM05D005707 ORTHO05D007276 0.0e+00 1558.1 966 80.8
BcaC06g35905 Brassica carinata HOM05D005707 ORTHO05D007276 0.0e+00 1556.6 945 81.9
BolC7t41423H Brassica oleracea HOM05D005707 ORTHO05D007276 0.0e+00 1556.6 945 81.9
Solyc06g065170.4 Solanum lycopersicum HOM05D005707 ORTHO05D007276 0.0e+00 1554.3 963 80.3
PSO732G0538 Papaver somniferum HOM05D005707 ORTHO05D007276 0.0e+00 1552.7 966 79.6
ECA240G2058 Erigeron canadensis HOM05D005707 ORTHO05D007276 0.0e+00 1552.3 950 81.8
PSO675G5925 Papaver somniferum HOM05D005707 ORTHO05D007276 0.0e+00 1552.3 966 79.7
HanXRQChr03g0075251 Helianthus annuus HOM05D005707 ORTHO05D007276 0.0e+00 1551.6 963 80.7
C07p09820 Brassica napus HOM05D005707 ORTHO05D007276 0.0e+00 1551.2 945 81.6
Thhalv10002393m.g Eutrema salsugineum HOM05D005707 ORTHO05D007276 0.0e+00 1550.4 945 81.4
Carub.0003s2668 Capsella rubella HOM05D005707 ORTHO05D007276 0.0e+00 1549.6 948 81.3
Oeu040469.1 Olea europaea HOM05D005707 ORTHO05D007276 0.0e+00 1547.7 964 81.0
AL3G42770 Arabidopsis lyrata HOM05D005707 ORTHO05D007276 0.0e+00 1545.8 948 81.0
Cc07_g12010 Coffea canephora HOM05D005707 ORTHO05D007276 0.0e+00 1545.4 952 80.7
Peaxi162Scf00268g00614 Petunia axillaris HOM05D005707 ORTHO05D007276 0.0e+00 1542.7 960 81.4
vmacro12103 Vaccinium macrocarpon HOM05D005707 ORTHO05D007276 0.0e+00 1541.6 966 81.1
BcaB06g26833 Brassica carinata HOM05D005707 ORTHO05D007276 0.0e+00 1537.7 945 81.2
Lsat_1_v5_gn_0_5460 Lactuca sativa HOM05D005707 ORTHO05D007276 0.0e+00 1537.3 960 80.4
AUR62001346 Chenopodium quinoa HOM05D005707 ORTHO05D007276 0.0e+00 1535.8 968 79.4
COL.COLO4_09234 Corchorus olitorius HOM05D005707 ORTHO05D007276 0.0e+00 1535.8 971 81.2
CARHR103040 Cardamine hirsuta HOM05D005707 ORTHO05D007276 0.0e+00 1535.4 947 81.0
AUR62025658 Chenopodium quinoa HOM05D005707 ORTHO05D007276 0.0e+00 1535.4 968 79.5
MSTRG.14925 Avicennia marina HOM05D005707 ORTHO05D007276 0.0e+00 1533.9 951 80.4
AT2G05170 Arabidopsis thaliana HOM05D005707 ORTHO05D007276 0.0e+00 1533.1 948 80.7
DCAR_012906 Daucus carota HOM05D005707 ORTHO05D007276 0.0e+00 1531.2 952 79.7
Hund18608 Selenicereus undatus HOM05D005707 ORTHO05D007276 0.0e+00 1530.4 984 78.8
Aa31LG9G17700 Aethionema arabicum HOM05D005707 ORTHO05D007276 0.0e+00 1528.5 958 79.3
EL10Ac7g18165 Beta vulgaris HOM05D005707 ORTHO05D007276 0.0e+00 1527.3 966 79.4
Ah.15g094340 Amaranthus hybridus HOM05D005707 ORTHO05D007276 0.0e+00 1523.1 966 79.8
Lsat_1_v5_gn_9_90020 Lactuca sativa HOM05D005707 ORTHO05D007276 0.0e+00 1522.3 965 79.8
Migut.M00030 Erythranthe guttata HOM05D005707 ORTHO05D007276 0.0e+00 1503.0 965 78.5
ATR0626G192 Amborella trichopoda HOM05D005707 ORTHO05D007276 0.0e+00 1479.5 959 77.5
Thecc.01G191800 Theobroma cacao HOM05D005707 ORTHO05D007276 0.0e+00 1468.8 834 88.1
Zm00001eb420950 Zea mays HOM05D005707 ORTHO05D007276 0.0e+00 1451.8 954 74.1
SGA_v2.0_scaffold73G24514 Striga asiatica HOM05D005707 ORTHO05D007276 0.0e+00 1443.3 963 75.7
Os04g0382700 Oryza sativa ssp. japonica HOM05D005707 ORTHO05D007276 0.0e+00 1437.9 946 73.5
unitig_37.g12597 Utricularia gibba HOM05D005707 ORTHO05D007276 0.0e+00 1373.2 949 72.9
SEGI_38374 Sequoiadendron giganteum HOM05D005707 ORTHO05D007276 0.0e+00 1364.7 969 71.3
Psat6g013160 Pisum sativum HOM05D005707 ORTHO05D007276 0.0e+00 1355.5 848 80.5
Oeu012343.5 Olea europaea HOM05D005707 ORTHO05D007276 0.0e+00 1351.7 946 74.0
DCAR_028089 Daucus carota HOM05D005707 ORTHO05D007276 0.0e+00 1343.9 857 78.5
Cpa.g.sc211.13 Carica papaya HOM05D005707 ORTHO05D007276 0.0e+00 1313.5 963 71.4
Lalb_Chr01g0023301 Lupinus albus HOM05D005707 ORTHO05D007276 0.0e+00 1266.9 737 85.2
Mapoly0022s0120 Marchantia polymorpha HOM05D005707 ORTHO05D007276 0.0e+00 1194.1 1000 60.2
AagrBONN_evm.TU.Sc2ySwM_344.1573 Anthoceros agrestis HOM05D005707 ORTHO05D007276 0.0e+00 1192.2 961 62.2
Sc15g0001000 Simmondsia chinensis HOM05D005707 ORTHO05D007276 0.0e+00 1178.3 704 83.2
Hma1.2p1_2056F.1_g312820 Hydrangea macrophylla HOM05D005707 ORTHO05D007276 0.0e+00 1125.9 671 83.9
SMO329G0026 Selaginella moellendorffii HOM05D005707 ORTHO05D007276 0.0e+00 1121.3 944 60.9
Hma1.2p1_1267F.1_g271470 Hydrangea macrophylla HOM05D005707 ORTHO05D007276 0.0e+00 1117.4 638 86.8
Pp3c25_5560 Physcomitrium patens HOM05D005707 ORTHO05D007276 0.0e+00 1114.0 1024 56.1
CDE12G0215 Ceratophyllum demersum HOM05D005707 ORTHO05D007276 1.5e-282 976.5 703 68.8
CBR_g20017 Chara braunii HOM05D005707 ORTHO05D007276 6.9e-227 791.6 762 53.3
Lsat_1_v5_gn_9_104540 Lactuca sativa HOM05D005707 ORTHO05D007276 2.2e-217 760.0 466 80.0
HPP92_028369 Vanilla planifolia HOM05D005707 ORTHO05D007276 3.0e-190 669.8 446 74.7
HPP92_028368 Vanilla planifolia HOM05D005707 ORTHO05D007276 3.1e-134 483.8 305 74.8
Cre02.g095074 Chlamydomonas reinhardtii HOM05D005707 ORTHO05D007276 1.8e-113 414.8 1311 25.3
PRCOL_00006472 Prasinoderma coloniale HOM05D005707 ORTHO05D007276 3.5e-106 390.6 638 38.4
Lalb_Chr01g0023291 Lupinus albus HOM05D005707 ORTHO05D007276 8.5e-84 316.2 203 76.4
Nn6g32392 Nelumbo nucifera HOM05D005707 ORTHO05D007276 1.7e-76 292.0 207 72.0
HPP92_014038 Vanilla planifolia HOM05D005707 ORTHO05D007276 2.2e-63 248.4 184 69.6
SEGI_06176 Sequoiadendron giganteum HOM05D005707 ORTHO05D007276 1.5e-59 235.7 301 46.8
Nn6g32391 Nelumbo nucifera HOM05D005707 ORTHO05D007276 1.4e-54 219.2 125 87.2
Peaxi162Scf00585g00082 Petunia axillaris HOM05D000636 ORTHO05D002338 4.9e-47 194.1 134 73.9
HPP92_014036 Vanilla planifolia HOM05D005707 ORTHO05D007276 4.7e-42 177.6 202 47.0
HPP92_014037 Vanilla planifolia HOM05D005707 ORTHO05D048631 5.4e-38 164.1 139 61.9
Nn2g13354 Nelumbo nucifera HOM05D005707 ORTHO05D007276 1.2e-29 136.3 64 96.9
VMungo0331G0660 Vigna mungo HOM05D000100 ORTHO05D000052 7.6e-16 90.5 80 60.0
MD09G1123100 Malus domestica HOM05D005707 ORTHO05D048631 7.6e-08 63.9 45 71.1
Actinidia07884 Actinidia chinensis HOM05D005707 ORTHO05D057301 3.8e-07 61.6 101 44.6


User provided reference genes

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