Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.013G010300 Populus trichocarpa HOM05D005935 ORTHO05D007012 4.9e-82 308.1 203 100.0
Manes.09G175700 Manihot esculenta HOM05D005935 ORTHO05D007012 5.4e-73 278.1 202 86.1
HanXRQChr10g0299201 Helianthus annuus HOM05D005935 ORTHO05D007012 3.9e-71 271.9 202 88.1
PGR031G1309 Punica granatum HOM05D005935 ORTHO05D007012 8.6e-71 270.8 201 85.6
Gohir.D08G223300 Gossypium hirsutum HOM05D005935 ORTHO05D007012 1.5e-70 270.0 201 90.0
Gorai.004G237200 Gossypium raimondii HOM05D005935 ORTHO05D007012 1.5e-70 270.0 201 90.0
Cpa.g.sc48.144 Carica papaya HOM05D005935 ORTHO05D007012 5.6e-70 268.1 201 90.5
Gohir.A08G206600 Gossypium hirsutum HOM05D005935 ORTHO05D007012 5.6e-70 268.1 201 89.6
COL.COLO4_04140 Corchorus olitorius HOM05D005935 ORTHO05D007012 9.5e-70 267.3 202 87.1
TAR362G1094 Trochodendron aralioides HOM05D005935 ORTHO05D007012 9.5e-70 267.3 201 81.6
TWI56G1463 Tripterygium wilfordii HOM05D005935 ORTHO05D007012 2.8e-69 265.8 202 88.6
Hma1.2p1_0008F-1.1_g005750 Hydrangea macrophylla HOM05D005935 ORTHO05D007012 4.7e-69 265.0 200 88.0
Prupe.6G314900 Prunus persica HOM05D005935 ORTHO05D007012 4.7e-69 265.0 204 85.3
Eucgr.H03282 Eucalyptus grandis HOM05D005935 ORTHO05D007012 6.2e-69 264.6 200 82.0
CANSAT54G1507 Cannabis sativa HOM05D005935 ORTHO05D007012 8.1e-69 264.2 202 89.6
arahy.Tifrunner.gnm1.ann1.7UDZ1N Arachis hypogaea HOM05D005935 ORTHO05D007012 1.1e-68 263.8 202 84.2
Zm00001eb121760 Zea mays HOM05D005935 ORTHO05D007012 1.1e-68 263.8 202 76.7
Sed0001365 Sechium edule HOM05D005935 ORTHO05D007012 1.4e-68 263.5 203 81.3
Thecc.05G321000 Theobroma cacao HOM05D005935 ORTHO05D007012 1.4e-68 263.5 202 87.1
TWI36G1229 Tripterygium wilfordii HOM05D005935 ORTHO05D007012 1.4e-68 263.5 202 86.6
MD04G1195100 Malus domestica HOM05D005935 ORTHO05D007012 1.8e-68 263.1 203 83.3
GSVIVG01031220001 Vitis vinifera HOM05D005935 ORTHO05D007012 1.8e-68 263.1 202 84.7
Os03g0831900 Oryza sativa ssp. japonica HOM05D005935 ORTHO05D007012 4.0e-68 261.9 203 77.8
Ciclev10002528m.g Citrus clementina HOM05D005935 ORTHO05D007012 5.2e-68 261.5 202 88.6
Haze_04079 Corylus avellana HOM05D005935 ORTHO05D007012 5.2e-68 261.5 193 82.9
Dinv24425 Davidia involucrata HOM05D005935 ORTHO05D007012 5.2e-68 261.5 201 82.6
Phvul.001G225500 Phaseolus vulgaris HOM05D005935 ORTHO05D007012 6.8e-68 261.2 200 84.0
arahy.Tifrunner.gnm1.ann1.G5WI6L Arachis hypogaea HOM05D005935 ORTHO05D007012 8.9e-68 260.8 200 86.5
arahy.Tifrunner.gnm1.ann1.H1X696 Arachis hypogaea HOM05D005935 ORTHO05D007012 8.9e-68 260.8 200 86.5
ClCG02G015080 Citrullus lanatus HOM05D005935 ORTHO05D007012 1.2e-67 260.4 199 81.4
MELO3C004198.2 Cucumis melo HOM05D005935 ORTHO05D007012 1.2e-67 260.4 199 81.4
Glyma.19G228900 Glycine max HOM05D005935 ORTHO05D007012 1.2e-67 260.4 198 84.8
arahy.Tifrunner.gnm1.ann1.I9BDFC Arachis hypogaea HOM05D005935 ORTHO05D007012 1.5e-67 260.0 202 84.2
CiPaw.07G028100 Carya illinoinensis HOM05D005935 ORTHO05D007012 1.5e-67 260.0 193 83.9
Migut.N01391 Erythranthe guttata HOM05D005935 ORTHO05D007012 1.5e-67 260.0 199 79.4
Lsat_1_v5_gn_5_102820 Lactuca sativa HOM05D005935 ORTHO05D007012 2.0e-67 259.6 202 78.7
CsaV3_2G006940 Cucumis sativus L. HOM05D005935 ORTHO05D007012 2.6e-67 259.2 199 80.9
Glyma.03G231900 Glycine max HOM05D005935 ORTHO05D007012 2.6e-67 259.2 198 87.9
THA.LOC104802776 Tarenaya hassleriana HOM05D005935 ORTHO05D007012 7.6e-67 257.7 202 83.7
MD12G1207200 Malus domestica HOM05D005935 ORTHO05D007012 9.9e-67 257.3 203 82.3
Atru.chr2.148 Acer truncatum HOM05D005935 ORTHO05D007012 1.3e-66 256.9 201 81.1
QL01p019294 Quercus lobata HOM05D005935 ORTHO05D007012 1.3e-66 256.9 193 89.6
TAR636G0846 Trochodendron aralioides HOM05D005935 ORTHO05D007012 1.3e-66 256.9 202 85.1
ECA234G4853 Erigeron canadensis HOM05D005935 ORTHO05D007012 2.2e-66 256.1 201 85.6
Ah.06g188880 Amaranthus hybridus HOM05D005935 ORTHO05D007012 2.9e-66 255.8 200 79.0
Lalb_Chr18g0046051 Lupinus albus HOM05D005935 ORTHO05D007012 2.9e-66 255.8 201 85.1
MSTRG.27950 Avicennia marina HOM05D005935 ORTHO05D007012 3.7e-66 255.4 200 80.0
EL10Ac4g09829 Beta vulgaris HOM05D005935 ORTHO05D007012 3.7e-66 255.4 200 79.0
FvH4_6g07240 Fragaria vesca HOM05D005935 ORTHO05D007012 3.7e-66 255.4 202 79.7
VMungo1383G1193 Vigna mungo HOM05D005935 ORTHO05D007012 8.4e-66 254.2 198 83.3
PSO170G3047 Papaver somniferum HOM05D005935 ORTHO05D007012 1.1e-65 253.8 202 83.7
PSO357G0321 Papaver somniferum HOM05D005935 ORTHO05D007012 1.1e-65 253.8 202 83.7
RcHm_v2.0_Chr3g0456881 Rosa chinensis HOM05D005935 ORTHO05D007012 1.9e-65 253.1 202 79.2
Ca_09298_v3 Cicer arietinum L. HOM05D005935 ORTHO05D007012 2.4e-65 252.7 202 81.7
Lalb_Chr04g0260471 Lupinus albus HOM05D005935 ORTHO05D007012 2.4e-65 252.7 200 79.5
SGA_v2.0_scaffold81G26126 Striga asiatica HOM05D005935 ORTHO05D007012 2.4e-65 252.7 199 79.4
Lj1g0021681 Lotus japonicus HOM05D005935 ORTHO05D007012 4.1e-65 251.9 201 80.1
QL03p018299 Quercus lobata HOM05D005935 ORTHO05D007012 4.1e-65 251.9 193 88.1
Actinidia16851 Actinidia chinensis HOM05D005935 ORTHO05D007012 7.1e-65 251.1 196 88.8
SGA_v2.0_scaffold80G25879 Striga asiatica HOM05D005935 ORTHO05D007012 1.2e-64 250.4 200 78.5
Cc02_g34830 Coffea canephora HOM05D005935 ORTHO05D007012 2.7e-64 249.2 200 77.0
Medtr7g112060 Medicago truncatula HOM05D005935 ORTHO05D007012 2.7e-64 249.2 197 83.2
Sc09g0002670 Simmondsia chinensis HOM05D005935 ORTHO05D007012 2.7e-64 249.2 200 86.5
unitig_21.g20172 Utricularia gibba HOM05D005935 ORTHO05D007012 2.7e-64 249.2 201 78.1
SalBow3G1520 Salvia bowleyana HOM05D005935 ORTHO05D007012 3.5e-64 248.8 200 77.0
AUR62000683 Chenopodium quinoa HOM05D005935 ORTHO05D007012 4.6e-64 248.4 200 83.5
FAN05G5324 Fragaria x ananassa HOM05D005935 ORTHO05D007012 6.0e-64 248.1 211 76.3
FAN14G3557 Fragaria x ananassa HOM05D005935 ORTHO05D007012 7.8e-64 247.7 211 76.3
FAN02G1619 Fragaria x ananassa HOM05D005935 ORTHO05D007012 1.7e-63 246.5 211 75.8
Duzib128G1094 Durio zibethinus HOM05D005935 ORTHO05D007012 2.3e-63 246.1 155 88.4
Psat3g013040 Pisum sativum HOM05D005935 ORTHO05D007012 3.0e-63 245.7 196 83.2
Carub.0003s0513 Capsella rubella HOM05D005935 ORTHO05D007012 3.9e-63 245.4 202 78.7
CDE05G0147 Ceratophyllum demersum HOM05D005935 ORTHO05D007012 3.9e-63 245.4 200 81.0
C05p61480 Brassica napus HOM05D002110 ORTHO05D007012 8.6e-63 244.2 202 75.2
CDE11G0767 Ceratophyllum demersum HOM05D005935 ORTHO05D007012 8.6e-63 244.2 200 80.5
PSO478G5244 Papaver somniferum HOM05D005935 ORTHO05D007012 1.1e-62 243.8 193 83.9
SEGI_34613 Sequoiadendron giganteum HOM05D005935 ORTHO05D007012 1.1e-62 243.8 199 72.4
Aqoxy2G00839 Aquilegia oxysepala HOM05D005935 ORTHO05D007012 2.5e-62 242.7 200 80.0
AT3G05760 Arabidopsis thaliana HOM05D005935 ORTHO05D007012 3.3e-62 242.3 202 78.7
Sp3g04650 Schrenkiella parvula HOM05D005935 ORTHO05D007012 3.3e-62 242.3 202 76.2
CARHR080230 Cardamine hirsuta HOM05D005935 ORTHO05D007012 7.3e-62 241.1 202 75.7
ATR0767G209 Amborella trichopoda HOM05D005935 ORTHO05D007012 9.6e-62 240.7 198 76.3
BcaC05g29782 Brassica carinata HOM05D005935 ORTHO05D007012 1.2e-61 240.4 202 77.2
BraA05t22944Z Brassica rapa HOM05D002110 ORTHO05D007012 1.6e-61 240.0 202 72.8
Nn3g21642 Nelumbo nucifera HOM05D005935 ORTHO05D007012 2.8e-61 239.2 202 74.8
Peaxi162Scf00673g00126 Petunia axillaris HOM05D005935 ORTHO05D007012 2.8e-61 239.2 193 79.3
AL3G16500 Arabidopsis lyrata HOM05D005935 ORTHO05D007012 6.2e-61 238.0 202 77.7
BcaC05g30089 Brassica carinata HOM05D005935 ORTHO05D007012 6.2e-61 238.0 202 71.3
Solyc01g100330.3 Solanum lycopersicum HOM05D005935 ORTHO05D007012 6.2e-61 238.0 193 77.2
Sopen01g043840 Solanum pennellii HOM05D005935 ORTHO05D007012 6.2e-61 238.0 193 77.2
PGSC0003DMG400002806 Solanum tuberosum HOM05D005935 ORTHO05D007012 1.4e-60 236.9 193 76.7
BolC5t34806H Brassica oleracea HOM05D002110 ORTHO05D007012 2.4e-60 236.1 198 71.7
vmacro01555 Vaccinium macrocarpon HOM05D005935 ORTHO05D007012 2.4e-60 236.1 236 66.5
Aqoxy4G02482 Aquilegia oxysepala HOM05D005935 ORTHO05D007012 3.1e-60 235.7 200 78.5
CAN.G1715.16 Capsicum annuum HOM05D005935 ORTHO05D007012 4.0e-60 235.3 193 78.2
Pp3c4_20180 Physcomitrium patens HOM05D005935 ORTHO05D007012 2.6e-59 232.6 201 75.6
DCAR_005416 Daucus carota HOM05D005935 ORTHO05D007012 7.6e-59 231.1 158 89.9
Mapoly0111s0002 Marchantia polymorpha HOM05D005935 ORTHO05D007012 7.6e-59 231.1 197 73.1
FAN09G4449 Fragaria x ananassa HOM05D005935 ORTHO05D007012 3.8e-58 228.8 155 76.8
Nitab4.5_0013342g0020 Nicotiana tabacum HOM05D000001 ORTHO05D004269 3.8e-58 228.8 205 74.1
HPP92_015241 Vanilla planifolia HOM05D005935 ORTHO05D007012 3.8e-58 228.8 193 82.4
CSS0047945 Camellia sinensis var. sinensis HOM05D005935 ORTHO05D007012 6.4e-58 228.0 158 89.9
Aa31LG5G16170 Aethionema arabicum HOM05D005935 ORTHO05D007012 4.2e-57 225.3 213 57.3
TPR.G1633 Trifolium pratense HOM05D005935 ORTHO05D007012 4.2e-57 225.3 200 70.5
Nitab4.5_0000155g0010 Nicotiana tabacum HOM05D005935 ORTHO05D007012 9.6e-54 214.2 193 73.1
AUR62005273 Chenopodium quinoa HOM05D005935 ORTHO05D007012 2.8e-53 212.6 194 79.9
AagrBONN_evm.TU.Sc2ySwM_344.1201 Anthoceros agrestis HOM05D005935 ORTHO05D007012 3.1e-52 209.1 146 71.9
Thhalv10022198m.g Eutrema salsugineum HOM05D005935 ORTHO05D007012 4.4e-51 205.3 273 53.8
Hund07136 Selenicereus undatus HOM05D005935 ORTHO05D007012 1.7e-50 203.4 291 55.3
AagrBONN_evm.TU.Sc2ySwM_228.1845 Anthoceros agrestis HOM05D005935 ORTHO05D007012 3.8e-50 202.2 146 69.2
SMO201G0167 Selaginella moellendorffii HOM05D005935 ORTHO05D007012 5.4e-49 198.4 202 60.4
AagrBONN_evm.TU.Sc2ySwM_368.1862 Anthoceros agrestis HOM05D005935 ORTHO05D007012 2.1e-48 196.4 138 73.2
Lj5A336T44 Lonicera japonica HOM05D005935 ORTHO05D007012 3.9e-47 192.2 105 87.6
CSS0009551 Camellia sinensis var. sinensis HOM05D005935 ORTHO05D007012 2.5e-46 189.5 194 70.1
Hund21747 Selenicereus undatus HOM05D005935 ORTHO05D007012 3.6e-45 185.7 193 67.9
Pp3c12_7700 Physcomitrium patens HOM05D005935 ORTHO05D007012 8.1e-45 184.5 150 80.7
Sabra13G0008800 Salix brachista HOM05D005935 ORTHO05D007012 1.5e-43 180.3 226 57.1
Nitab4.5_0000368g0260 Nicotiana tabacum HOM05D005935 ORTHO05D007012 5.8e-43 178.3 193 60.1
Rhsim11G0094200 Rhododendron simsii HOM05D005935 ORTHO05D007012 1.4e-41 173.7 196 53.1
Oeu013219.2 Olea europaea HOM05D005935 ORTHO05D007012 2.1e-40 169.9 213 69.0
CSS0024691 Camellia sinensis var. sinensis HOM05D005935 ORTHO05D007012 4.6e-40 168.7 147 66.7
RcHm_v2.0_Chr7g0179971 Rosa chinensis HOM05D005935 ORTHO05D007012 2.0e-35 153.3 143 58.0
CSS0031844 Camellia sinensis var. sinensis HOM05D005935 ORTHO05D007012 1.3e-34 150.6 126 66.7
Nitab4.5_0007747g0010 Nicotiana tabacum HOM05D005935 ORTHO05D007012 2.2e-34 149.8 122 82.8
CSS0034550 Camellia sinensis var. sinensis HOM05D005935 ORTHO05D007012 1.9e-33 146.7 228 56.6
CBR_g38440 Chara braunii HOM05D005935 ORTHO05D007012 2.5e-30 136.3 203 46.8
Actinidia35528 Actinidia chinensis HOM05D005935 ORTHO05D007012 1.1e-28 131.0 280 50.7
Cre07.g341650 Chlamydomonas reinhardtii HOM05D005935 ORTHO05D007012 1.1e-28 131.0 158 61.4
FAN04G2955 Fragaria x ananassa HOM05D005935 ORTHO05D007012 1.1e-20 104.4 89 59.6
MCO03G264 Micromonas commoda HOM05D005935 ORTHO05D007012 1.8e-20 103.6 211 42.2
Zm00001eb307900 Zea mays HOM05D005935 ORTHO05D007012 5.0e-18 95.5 94 75.5
Zm00001eb114570 Zea mays HOM05D005935 ORTHO05D007012 1.9e-17 93.6 89 77.5
PRCOL_00000245 Prasinoderma coloniale HOM05D005935 ORTHO05D007012 6.3e-13 78.6 200 36.5
Zm00001eb180860 Zea mays HOM05D005935 ORTHO05D007012 1.2e-11 74.3 46 80.4
Cfa024511 Carpinus fangiana HOM05D005935 ORTHO05D007012 1.4e-07 60.8 163 25.8


User provided reference genes

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