Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.009G105500 Populus trichocarpa HOM05D006779 ORTHO05D008491 5.8e-125 451.1 251 100.0
Sabra09G0080600 Salix brachista HOM05D006779 ORTHO05D008491 1.7e-121 439.5 251 96.8
Manes.15G142500 Manihot esculenta HOM05D006779 ORTHO05D008491 7.1e-91 337.8 251 75.7
FAN15G3147 Fragaria x ananassa HOM05D006779 ORTHO05D008491 5.3e-86 321.6 253 73.1
CiPaw.05G054000 Carya illinoinensis HOM05D006779 ORTHO05D008491 9.0e-86 320.9 253 73.9
FAN20G2937 Fragaria x ananassa HOM05D006779 ORTHO05D008491 1.2e-85 320.5 253 72.7
FAN24G0787 Fragaria x ananassa HOM05D006779 ORTHO05D008491 1.2e-85 320.5 253 73.5
FvH4_2g06680 Fragaria vesca HOM05D006779 ORTHO05D008491 2.0e-85 319.7 253 73.5
CsaV3_7G008730 Cucumis sativus L. HOM05D006779 ORTHO05D008491 7.6e-85 317.8 252 71.8
Dinv23582 Davidia involucrata HOM05D006779 ORTHO05D008491 4.2e-83 312.0 263 70.3
RcHm_v2.0_Chr6g0258731 Rosa chinensis HOM05D006779 ORTHO05D008491 1.0e-81 307.4 253 69.6
Sed0011670 Sechium edule HOM05D006779 ORTHO05D008491 1.0e-81 307.4 252 69.8
Haze_01903 Corylus avellana HOM05D006779 ORTHO05D008491 3.0e-81 305.8 253 71.1
QL11p037315 Quercus lobata HOM05D006779 ORTHO05D008491 3.9e-81 305.4 251 71.3
Prupe.8G119200 Prunus persica HOM05D006779 ORTHO05D008491 6.7e-81 304.7 251 70.5
Cc02_g18560 Coffea canephora HOM05D006779 ORTHO05D008491 1.9e-80 303.1 262 68.3
TWI79G0004 Tripterygium wilfordii HOM05D006779 ORTHO05D008491 4.3e-80 302.0 255 70.6
Dinv42131 Davidia involucrata HOM05D006779 ORTHO05D008491 7.4e-80 301.2 264 69.3
MD05G1075500 Malus domestica HOM05D006779 ORTHO05D008491 4.8e-79 298.5 251 70.1
GSVIVG01031784001 Vitis vinifera HOM05D006779 ORTHO05D008491 1.1e-78 297.4 254 70.5
PGR142G0644 Punica granatum HOM05D006779 ORTHO05D008491 1.8e-78 296.6 253 70.4
CSS0011815 Camellia sinensis var. sinensis HOM05D000591 ORTHO05D000579 7.6e-77 291.2 258 64.7
Eucgr.I01169 Eucalyptus grandis HOM05D006779 ORTHO05D008491 7.6e-77 291.2 251 67.7
Thecc.02G097400 Theobroma cacao HOM05D006779 ORTHO05D008491 1.7e-76 290.0 251 70.5
Ciclev10029963m.g Citrus clementina HOM05D006779 ORTHO05D008491 2.5e-75 286.2 254 69.3
Solyc01g108430.3 Solanum lycopersicum HOM05D006779 ORTHO05D008491 4.2e-75 285.4 263 65.0
Atru.chr5.2773 Acer truncatum HOM05D006779 ORTHO05D008491 5.5e-75 285.0 253 70.8
Actinidia00459 Actinidia chinensis HOM05D006779 ORTHO05D008491 7.1e-75 284.6 259 63.3
TWI31G0027 Tripterygium wilfordii HOM05D006779 ORTHO05D008491 9.3e-75 284.3 255 67.5
Phvul.007G247000 Phaseolus vulgaris HOM05D006779 ORTHO05D008491 1.6e-74 283.5 248 63.3
Nitab4.5_0004334g0110 Nicotiana tabacum HOM05D006779 ORTHO05D008491 4.6e-74 282.0 263 65.0
Sopen01g050660 Solanum pennellii HOM05D006779 ORTHO05D008491 4.6e-74 282.0 263 64.3
ClCG02G005780 Citrullus lanatus HOM05D006779 ORTHO05D008491 6.0e-74 281.6 294 59.5
PGSC0003DMG400025811 Solanum tuberosum HOM05D006779 ORTHO05D008491 1.0e-73 280.8 263 64.3
CANSAT25G0176 Cannabis sativa HOM05D006779 ORTHO05D008491 1.3e-73 280.4 253 68.0
arahy.Tifrunner.gnm1.ann1.T066AP Arachis hypogaea HOM05D006779 ORTHO05D008491 3.0e-73 279.3 250 66.4
arahy.Tifrunner.gnm1.ann1.8ZG09Z Arachis hypogaea HOM05D006779 ORTHO05D008491 2.5e-72 276.2 252 67.1
Lalb_Chr09g0328181 Lupinus albus HOM05D006779 ORTHO05D008491 5.7e-72 275.0 249 67.1
Glyma.01G146900 Glycine max HOM05D006779 ORTHO05D008491 9.6e-72 274.2 248 65.3
Glyma.10G112900 Glycine max HOM05D006779 ORTHO05D008491 9.6e-72 274.2 248 65.3
Gorai.005G240600 Gossypium raimondii HOM05D006779 ORTHO05D008491 9.6e-72 274.2 251 67.3
Gohir.D02G212600 Gossypium hirsutum HOM05D006779 ORTHO05D008491 1.3e-71 273.9 251 67.3
Sc18g0004890 Simmondsia chinensis HOM05D006779 ORTHO05D008491 1.6e-71 273.5 254 67.3
Gohir.A03G191700 Gossypium hirsutum HOM05D006779 ORTHO05D008491 4.8e-71 271.9 252 67.5
Migut.B00314 Erythranthe guttata HOM05D006779 ORTHO05D008491 1.4e-70 270.4 267 63.7
Glyma.02G159500 Glycine max HOM05D006779 ORTHO05D008491 3.1e-70 269.2 248 65.3
Oeu064516.1 Olea europaea HOM05D006779 ORTHO05D008491 5.3e-70 268.5 262 60.3
Nitab4.5_0005583g0020 Nicotiana tabacum HOM05D006779 ORTHO05D008491 3.4e-69 265.8 263 62.7
arahy.Tifrunner.gnm1.ann1.QJKD6Y Arachis hypogaea HOM05D006779 ORTHO05D008491 4.5e-69 265.4 250 65.2
COL.COLO4_32686 Corchorus olitorius HOM05D006779 ORTHO05D008491 5.8e-69 265.0 251 68.1
Aa31LG10G4420 Aethionema arabicum HOM05D006779 ORTHO05D008491 1.7e-68 263.5 250 65.2
vmacro02181 Vaccinium macrocarpon HOM05D006779 ORTHO05D008491 3.8e-68 262.3 295 54.6
Nn5g30192 Nelumbo nucifera HOM05D006779 ORTHO05D008491 5.0e-68 261.9 260 64.6
MSTRG.16763 Avicennia marina HOM05D006779 ORTHO05D008491 6.5e-68 261.5 253 65.2
DCAR_029018 Daucus carota HOM05D000144 ORTHO05D003364 6.5e-68 261.5 263 63.9
Rhsim11G0168500 Rhododendron simsii HOM05D006779 ORTHO05D008491 1.1e-67 260.8 291 54.3
CAN.G322.16 Capsicum annuum HOM05D006779 ORTHO05D008491 2.5e-67 259.6 252 63.1
SalBow6G0615 Salvia bowleyana HOM05D006779 ORTHO05D008491 1.6e-66 256.9 258 62.0
Psat7g121840 Pisum sativum HOM05D006779 ORTHO05D008491 2.7e-66 256.1 252 64.3
Thhalv10011741m.g Eutrema salsugineum HOM05D006779 ORTHO05D008491 6.1e-66 255.0 250 62.4
unitig_60.g25783 Utricularia gibba HOM05D006779 ORTHO05D008491 1.0e-65 254.2 256 62.9
Sp1g36470 Schrenkiella parvula HOM05D006779 ORTHO05D008491 1.8e-65 253.4 250 62.0
Lj5C207T4 Lonicera japonica HOM05D006779 ORTHO05D008491 2.3e-65 253.1 263 60.1
Peaxi162Scf00016g01637 Petunia axillaris HOM05D006779 ORTHO05D008491 3.3e-64 249.2 253 63.6
EL10Ac3g06870 Beta vulgaris HOM05D006779 ORTHO05D008491 4.3e-64 248.8 250 63.2
AUR62034187 Chenopodium quinoa HOM05D006779 ORTHO05D008491 7.4e-64 248.1 251 62.2
Ca_18655_v3 Cicer arietinum L. HOM05D006779 ORTHO05D008491 1.3e-63 247.3 248 61.3
Aqoxy6G01411 Aquilegia oxysepala HOM05D006779 ORTHO05D008491 1.6e-63 246.9 262 60.3
Lj4g0006122 Lotus japonicus HOM05D006779 ORTHO05D008491 9.0e-62 241.1 248 62.9
MBI02_g21199_MAGBIO Magnolia biondii HOM05D006779 ORTHO05D008491 9.0e-62 241.1 273 58.6
A06p03540 Brassica napus HOM05D006779 ORTHO05D008491 1.5e-61 240.4 251 61.0
AT1G49590 Arabidopsis thaliana HOM05D006779 ORTHO05D008491 2.0e-61 240.0 250 61.2
PSO541G4058 Papaver somniferum HOM05D006779 ORTHO05D008491 7.7e-61 238.0 263 60.8
BolC6t35591H Brassica oleracea HOM05D006779 ORTHO05D008491 2.2e-60 236.5 248 59.3
BraA06t23562Z Brassica rapa HOM05D006779 ORTHO05D008491 5.0e-60 235.3 253 58.9
AUR62022456 Chenopodium quinoa HOM05D006779 ORTHO05D008491 5.0e-60 235.3 291 54.6
Hund00325 Selenicereus undatus HOM05D006779 ORTHO05D008491 1.4e-59 233.8 250 61.2
SGA_v2.0_scaffold90G27693 Striga asiatica HOM05D006779 ORTHO05D008491 1.9e-59 233.4 262 53.4
HanXRQChr10g0303251 Helianthus annuus HOM05D006779 ORTHO05D008491 3.2e-59 232.6 250 59.2
SHI05379 Sapria himalayana HOM05D006779 ORTHO05D008491 3.2e-59 232.6 252 57.1
Ah.04g152710 Amaranthus hybridus HOM05D006779 ORTHO05D008491 5.5e-59 231.9 247 58.7
SGA_v2.0_scaffold90G27688 Striga asiatica HOM05D006779 ORTHO05D008491 9.4e-59 231.1 264 53.4
Carub.0001s3879 Capsella rubella HOM05D006779 ORTHO05D008491 1.2e-58 230.7 250 60.0
HPP92_004257 Vanilla planifolia HOM05D006779 ORTHO05D008491 6.1e-58 228.4 260 56.9
ECA234G4762 Erigeron canadensis HOM05D006779 ORTHO05D008491 7.9e-58 228.0 254 57.9
PSO675G5018 Papaver somniferum HOM05D006779 ORTHO05D008491 3.9e-57 225.7 263 58.9
MELO3C018438.2 Cucumis melo HOM05D006779 ORTHO05D008491 1.5e-56 223.8 206 68.0
BcaNung06359 Brassica carinata HOM05D006779 ORTHO05D008491 4.1e-54 215.7 251 56.2
AL1G56960 Arabidopsis lyrata HOM05D006779 ORTHO05D008491 2.0e-53 213.4 270 53.7
Lsat_1_v5_gn_5_113321 Lactuca sativa HOM05D006779 ORTHO05D008491 8.5e-52 208.0 258 50.0
Medtr4g086640 Medicago truncatula HOM05D006779 ORTHO05D008491 1.4e-51 207.2 250 56.0
CDE06G1966 Ceratophyllum demersum HOM05D006779 ORTHO05D008491 6.7e-49 198.4 249 50.6
FAN20G1913 Fragaria x ananassa HOM05D006779 ORTHO05D008491 5.2e-41 172.2 150 71.3
Mapoly0157s0003 Marchantia polymorpha HOM05D006779 ORTHO05D008491 6.7e-41 171.8 299 45.2
ATR0097G032 Amborella trichopoda HOM05D006779 ORTHO05D008491 1.1e-40 171.0 241 47.3
Zm00001eb373090 Zea mays HOM05D006779 ORTHO05D008491 2.6e-40 169.9 251 50.6
C06p04620 Brassica napus HOM05D006779 ORTHO05D008491 4.4e-40 169.1 205 57.6
AagrBONN_evm.TU.Sc2ySwM_344.4302 Anthoceros agrestis HOM05D006779 ORTHO05D008491 2.0e-37 160.2 288 44.1
SMO367G0139 Selaginella moellendorffii HOM05D006779 ORTHO05D008491 4.2e-35 152.5 281 43.1
TAR628G0388 Trochodendron aralioides HOM05D006779 ORTHO05D008491 2.1e-34 150.2 111 69.4
Cpa.g.sc62.36 Carica papaya HOM05D006779 ORTHO05D008491 1.8e-33 147.1 101 73.3
Pp3c14_26080 Physcomitrium patens HOM05D006779 ORTHO05D008491 1.8e-33 147.1 292 41.8
CSS0021002 Camellia sinensis var. sinensis HOM05D006779 ORTHO05D008491 7.7e-29 131.7 191 49.7
CSS0024784 Camellia sinensis var. sinensis HOM05D006779 ORTHO05D008491 7.7e-29 131.7 191 49.2
CBR_g17671 Chara braunii HOM05D006779 ORTHO05D008491 7.7e-29 131.7 338 34.9
HPP92_004235 Vanilla planifolia HOM05D006779 ORTHO05D008491 1.7e-28 130.6 214 50.5
CARHR039640 Cardamine hirsuta HOM05D006779 ORTHO05D008491 6.5e-28 128.6 153 60.1
AUR62042088 Chenopodium quinoa HOM05D006779 ORTHO05D008491 8.8e-25 118.2 203 48.3
TPR.G23511 Trifolium pratense HOM05D006779 ORTHO05D008491 4.4e-24 115.9 70 77.1
Os06g0215200 Oryza sativa ssp. japonica HOM05D006779 ORTHO05D008491 9.8e-24 114.8 70 74.3
TPR.G23531 Trifolium pratense HOM05D006779 ORTHO05D008491 8.3e-23 111.7 151 55.0
CSS0022737 Camellia sinensis var. sinensis HOM05D006779 ORTHO05D008491 2.8e-18 96.7 182 42.3
CDE03G0027 Ceratophyllum demersum HOM05D006779 ORTHO05D008491 8.0e-18 95.1 249 36.1
CSS0005405 Camellia sinensis var. sinensis HOM05D006779 ORTHO05D008491 1.4e-14 84.3 153 43.1
CSS0011003 Camellia sinensis var. sinensis HOM05D006779 ORTHO05D008491 1.4e-14 84.3 153 43.1
CSS0034996 Camellia sinensis var. sinensis HOM05D006779 ORTHO05D008491 1.2e-13 81.3 191 39.3
TAR628G1516 Trochodendron aralioides HOM05D006779 ORTHO05D008491 2.7e-13 80.1 120 49.2
MD10G1090400 Malus domestica HOM05D006779 ORTHO05D008491 6.2e-10 68.9 107 47.7
Ah.08g219340 Amaranthus hybridus HOM05D006779 ORTHO05D008491 4.4e-08 62.8 93 48.4
EL10Ac9g20940 Beta vulgaris HOM05D002686 ORTHO05D003222 3.7e-07 59.7 68 51.5


User provided reference genes

Program Settings