Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.006G081100 Populus trichocarpa HOM05D007201 ORTHO05D009122 9.0e-219 763.5 433 100.0
Sabra06G0061200 Salix brachista HOM05D007201 ORTHO05D009122 1.9e-184 649.4 476 76.5
Manes.02G222200 Manihot esculenta HOM05D007201 ORTHO05D009122 3.7e-95 352.8 442 52.5
TAR626G0209 Trochodendron aralioides HOM05D007201 ORTHO05D009122 4.8e-95 352.4 457 48.1
CSS0027843 Camellia sinensis var. sinensis HOM05D007201 ORTHO05D009122 4.2e-91 339.3 445 48.8
Haze_21242 Corylus avellana HOM05D007201 ORTHO05D009122 9.4e-91 338.2 468 46.6
Thecc.09G202300 Theobroma cacao HOM05D007201 ORTHO05D009122 1.2e-90 337.8 448 50.4
Cfa012872 Carpinus fangiana HOM05D007201 ORTHO05D009122 1.8e-89 334.0 454 48.9
FvH4_4g00131 Fragaria vesca HOM05D007201 ORTHO05D009122 3.9e-89 332.8 440 47.7
Ciclev10008517m.g Citrus clementina HOM05D007201 ORTHO05D009122 2.0e-88 330.5 433 48.7
Rhsim03G0269700 Rhododendron simsii HOM05D007201 ORTHO05D009122 3.3e-88 329.7 443 47.6
Prupe.1G000600 Prunus persica HOM05D007201 ORTHO05D009122 5.7e-88 328.9 445 51.5
RcHm_v2.0_Chr4g0384751 Rosa chinensis HOM05D007201 ORTHO05D009122 6.3e-87 325.5 443 46.3
QL11p005700 Quercus lobata HOM05D007201 ORTHO05D009122 2.4e-86 323.6 459 46.0
Atru.chr7.298 Acer truncatum HOM05D007201 ORTHO05D009122 2.0e-85 320.5 445 47.9
FAN12G0236 Fragaria x ananassa HOM05D007201 ORTHO05D009122 1.3e-84 317.8 435 46.4
Gorai.012G009900 Gossypium raimondii HOM05D007201 ORTHO05D009122 1.6e-82 310.8 455 51.9
Gohir.D04G008200 Gossypium hirsutum HOM05D007201 ORTHO05D009122 2.1e-82 310.5 451 47.0
Actinidia03796 Actinidia chinensis HOM05D007201 ORTHO05D009122 6.1e-82 308.9 447 48.3
CiPaw.15G000100 Carya illinoinensis HOM05D007201 ORTHO05D009122 1.4e-81 307.8 451 46.6
COL.COLO4_09000 Corchorus olitorius HOM05D007201 ORTHO05D009122 1.1e-80 304.7 455 47.3
MELO3C010035.2 Cucumis melo HOM05D007201 ORTHO05D009122 1.3e-79 301.2 436 43.8
Nn8g41282 Nelumbo nucifera HOM05D007201 ORTHO05D009122 1.4e-78 297.7 436 47.0
Sc10g0006090 Simmondsia chinensis HOM05D007201 ORTHO05D009122 1.3e-76 291.2 445 46.3
MD04G1000600 Malus domestica HOM05D007201 ORTHO05D009122 3.8e-76 289.7 441 46.7
Cc06_g23490 Coffea canephora HOM05D007201 ORTHO05D009122 1.9e-75 287.3 475 44.4
CsaV3_1G044360 Cucumis sativus L. HOM05D007201 ORTHO05D009122 1.2e-74 284.6 441 42.9
PSO339G5324 Papaver somniferum HOM05D007201 ORTHO05D009122 5.7e-72 275.8 447 44.3
Cpa.g.sc46.114 Carica papaya HOM05D007201 ORTHO05D009122 7.5e-72 275.4 462 44.4
Aqoxy7G02518 Aquilegia oxysepala HOM05D007201 ORTHO05D009122 6.3e-71 272.3 458 42.1
Solyc12g009390.2 Solanum lycopersicum HOM05D007201 ORTHO05D009122 4.1e-70 269.6 479 43.6
PGSC0003DMG400002893 Solanum tuberosum HOM05D007201 ORTHO05D009122 5.4e-70 269.2 474 43.5
Hund22525 Selenicereus undatus HOM05D007201 ORTHO05D009122 1.6e-69 267.7 436 43.3
Phvul.011G018600 Phaseolus vulgaris HOM05D007201 ORTHO05D009122 5.9e-69 265.8 442 41.4
CSS0037159 Camellia sinensis var. sinensis HOM05D007201 ORTHO05D009122 2.9e-68 263.5 354 46.0
HanXRQChr10g0309261 Helianthus annuus HOM05D007201 ORTHO05D009122 2.9e-68 263.5 270 58.9
DCAR_019970 Daucus carota HOM05D002293 ORTHO05D005475 1.5e-67 261.2 433 41.1
PGR142G4385 Punica granatum HOM05D007201 ORTHO05D009122 3.2e-67 260.0 432 39.6
Dinv26498 Davidia involucrata HOM05D007201 ORTHO05D009122 7.2e-67 258.8 446 43.7
SHI24431 Sapria himalayana HOM05D007201 ORTHO05D009122 1.6e-66 257.7 282 53.9
Lju50A20G7 Lonicera japonica HOM05D007201 ORTHO05D009122 1.0e-65 255.0 461 41.4
Peaxi162Scf00047g02450 Petunia axillaris HOM05D007201 ORTHO05D009122 3.0e-65 253.4 427 44.7
Lj3g0009807 Lotus japonicus HOM05D007201 ORTHO05D009122 4.0e-65 253.1 447 43.8
GSVIVG01034266001 Vitis vinifera HOM05D007201 ORTHO05D009122 8.8e-65 251.9 438 42.5
VMungo1127G0228 Vigna mungo HOM05D007201 ORTHO05D009122 1.7e-63 247.7 456 39.7
ECA240G0013 Erigeron canadensis HOM05D006383 ORTHO05D007815 2.2e-63 247.3 460 39.6
arahy.Tifrunner.gnm1.ann1.X4HTYC Arachis hypogaea HOM05D007201 ORTHO05D009122 3.7e-63 246.5 475 41.1
Glyma.12G016400 Glycine max HOM05D007201 ORTHO05D009122 4.9e-63 246.1 447 41.6
FAN22G0406 Fragaria x ananassa HOM05D007201 ORTHO05D009122 1.1e-62 245.0 434 41.2
Glyma.11G109000 Glycine max HOM05D007201 ORTHO05D009122 1.8e-62 244.2 453 42.4
arahy.Tifrunner.gnm1.ann1.G7GJBK Arachis hypogaea HOM05D007201 ORTHO05D009122 2.4e-62 243.8 472 41.1
Psat7g169960 Pisum sativum HOM05D007201 ORTHO05D009122 2.4e-62 243.8 445 40.4
Sopen12g004380 Solanum pennellii HOM05D007201 ORTHO05D009122 2.4e-62 243.8 472 43.4
vmacro22702 Vaccinium macrocarpon HOM05D007201 ORTHO05D009122 4.1e-62 243.0 529 37.1
Eucgr.C00055 Eucalyptus grandis HOM05D007201 ORTHO05D009122 9.1e-62 241.9 448 43.1
Lsat_1_v5_gn_5_80700 Lactuca sativa HOM05D007201 ORTHO05D009122 1.6e-61 241.1 441 39.0
SGA_v2.0_scaffold21G09583 Striga asiatica HOM05D007201 ORTHO05D009122 4.5e-61 239.6 458 43.7
Nitab4.5_0000073g0490 Nicotiana tabacum HOM05D007201 ORTHO05D009122 5.9e-61 239.2 479 39.5
Carub.0002s2218 Capsella rubella HOM05D007201 ORTHO05D009122 1.0e-60 238.4 436 43.1
ECA234G1264 Erigeron canadensis HOM05D007201 ORTHO05D009122 1.1e-59 235.0 442 39.4
HPP92_017373 Vanilla planifolia HOM05D007201 ORTHO05D009122 3.3e-59 233.4 434 41.0
Aqoxy37s001 Aquilegia oxysepala HOM05D007201 ORTHO05D009122 1.2e-58 231.5 291 47.8
EL10Ac2g03602 Beta vulgaris HOM05D007201 ORTHO05D009122 4.7e-58 229.6 454 43.6
CSS0027553 Camellia sinensis var. sinensis HOM05D007201 ORTHO05D009122 4.7e-58 229.6 324 46.6
Lalb_Chr19g0140031 Lupinus albus HOM05D007201 ORTHO05D009122 2.3e-57 227.3 435 43.4
Duzib168G1263 Durio zibethinus HOM05D007201 ORTHO05D009122 4.0e-57 226.5 442 47.7
TPR.G28027 Trifolium pratense HOM05D007201 ORTHO05D009122 1.2e-56 224.9 497 36.4
FAN12G1512 Fragaria x ananassa HOM05D007201 ORTHO05D009122 4.4e-56 223.0 307 45.0
AL2G35270 Arabidopsis lyrata HOM05D007201 ORTHO05D009122 6.3e-55 219.2 458 41.9
CANSAT25G2467 Cannabis sativa HOM05D007201 ORTHO05D009122 6.3e-55 219.2 226 51.3
CAN.G1591.3 Capsicum annuum HOM05D007201 ORTHO05D009122 8.3e-55 218.8 249 53.8
THA.LOC104809224 Tarenaya hassleriana HOM05D007201 ORTHO05D009122 4.1e-54 216.5 452 38.7
Thhalv10018711m.g Eutrema salsugineum HOM05D007201 ORTHO05D009122 7.8e-53 212.2 442 38.2
Zm00001eb227240 Zea mays HOM05D007201 ORTHO05D009122 8.6e-52 208.8 444 35.4
Medtr4g078160 Medicago truncatula HOM05D007201 ORTHO05D009122 1.9e-51 207.6 467 34.9
CARHR068690 Cardamine hirsuta HOM05D007201 ORTHO05D009122 4.3e-51 206.5 442 39.6
ATR0626G320 Amborella trichopoda HOM05D007201 ORTHO05D009122 9.5e-51 205.3 449 35.9
Sp5g30480 Schrenkiella parvula HOM05D007201 ORTHO05D009122 2.1e-50 204.1 462 39.8
Nitab4.5_0004827g0030 Nicotiana tabacum HOM05D007201 ORTHO05D009122 4.7e-50 203.0 381 42.8
BraA07t31630Z Brassica rapa HOM05D007201 ORTHO05D009122 6.2e-50 202.6 448 36.8
A07p40900 Brassica napus HOM05D007201 ORTHO05D009122 1.0e-49 201.8 466 38.6
Os06g0704300 Oryza sativa ssp. japonica HOM05D007201 ORTHO05D009122 1.0e-49 201.8 458 36.9
C06p49330 Brassica napus HOM05D007201 ORTHO05D009122 2.3e-49 200.7 475 37.7
AUR62027959 Chenopodium quinoa HOM05D007201 ORTHO05D009122 7.5e-48 195.7 452 40.0
BcaC08g47362 Brassica carinata HOM05D007201 ORTHO05D009122 2.2e-47 194.1 470 37.4
SEGI_05170 Sequoiadendron giganteum HOM05D007201 ORTHO05D009122 3.2e-46 190.3 454 35.7
BolC6t39968H Brassica oleracea HOM05D007201 ORTHO05D009122 9.2e-46 188.7 465 36.3
CDE04G0352 Ceratophyllum demersum HOM05D007201 ORTHO05D009122 2.0e-45 187.6 406 36.5
AT1G75340 Arabidopsis thaliana HOM05D007201 ORTHO05D009122 3.5e-45 186.8 463 40.4
Aa31LG4G5550 Aethionema arabicum HOM05D007201 ORTHO05D009122 3.3e-43 180.3 422 35.3
unitig_8.g3542 Utricularia gibba HOM05D007201 ORTHO05D009122 8.3e-39 165.6 261 39.8
ClCG03G010480 Citrullus lanatus HOM05D007201 ORTHO05D009122 2.3e-33 147.5 258 42.2
FAN17G0247 Fragaria x ananassa HOM05D007201 ORTHO05D009122 3.2e-30 137.1 96 66.7
Pp3c7_12210 Physcomitrium patens HOM05D007201 ORTHO05D009122 9.2e-30 135.6 456 30.7
Oeu000954.1 Olea europaea HOM05D007201 ORTHO05D009122 3.5e-29 133.7 293 36.5
Migut.L01609 Erythranthe guttata HOM05D007201 ORTHO05D009122 1.2e-26 125.2 305 37.0
Mapoly0005s0044 Marchantia polymorpha HOM05D007201 ORTHO05D009122 1.1e-25 122.1 452 34.7
Gohir.A05G407400 Gossypium hirsutum HOM05D007201 ORTHO05D009122 1.8e-25 121.3 280 41.8
AagrBONN_evm.TU.Sc2ySwM_117.2509 Anthoceros agrestis HOM05D007201 ORTHO05D009122 4.3e-19 100.1 207 34.8
CBR_g15955 Chara braunii HOM05D007201 ORTHO05D009122 6.2e-18 96.3 202 38.6
CSS0006520 Camellia sinensis var. sinensis HOM05D007201 ORTHO05D009122 3.8e-15 87.0 59 66.1
CSS0048863 Camellia sinensis var. sinensis HOM05D007201 ORTHO05D009122 3.8e-15 87.0 59 66.1
CSS0018491 Camellia sinensis var. sinensis HOM05D007201 ORTHO05D009122 2.8e-10 70.9 47 66.0
FAN17G2523 Fragaria x ananassa HOM05D007201 ORTHO05D009122 1.8e-09 68.2 61 52.5
CSS0038290 Camellia sinensis var. sinensis HOM05D007201 ORTHO05D009122 4.5e-08 63.5 47 63.8
arahy.Tifrunner.gnm1.ann1.IV261E Arachis hypogaea HOM05D000013 ORTHO05D000506 5.8e-08 63.2 100 41.0
Cre06.g254700 Chlamydomonas reinhardtii HOM05D007201 ORTHO05D009122 6.4e-07 59.7 90 35.6
Sed0005629 Sechium edule HOM05D007201 ORTHO05D009122 8.4e-07 59.3 103 44.7


User provided reference genes

Program Settings