Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.005G210600 Populus trichocarpa HOM05D004820 ORTHO05D005946 9.1e-208 726.9 419 100.0
Sabra05G0160800 Salix brachista HOM05D004820 ORTHO05D005946 1.5e-197 693.0 425 95.3
Manes.01G206900 Manihot esculenta HOM05D004820 ORTHO05D005946 7.8e-175 617.5 419 85.9
Glyma.03G155000 Glycine max HOM05D004820 ORTHO05D005946 2.0e-167 592.8 420 81.0
Atru.chr5.1456 Acer truncatum HOM05D004820 ORTHO05D005946 2.7e-167 592.4 420 81.4
TPR.G9917 Trifolium pratense HOM05D004820 ORTHO05D005946 1.0e-166 590.5 420 83.3
Glyma.19G157200 Glycine max HOM05D004820 ORTHO05D005946 1.7e-166 589.7 416 80.3
Cpa.g.sc52.45 Carica papaya HOM05D004820 ORTHO05D005946 1.9e-165 586.3 422 82.2
Thecc.01G277300 Theobroma cacao HOM05D004820 ORTHO05D005946 5.6e-165 584.7 420 84.0
VMungo1383G2933 Vigna mungo HOM05D004820 ORTHO05D005946 2.8e-164 582.4 419 80.2
Duzib138G0452 Durio zibethinus HOM05D004820 ORTHO05D005946 4.7e-164 581.6 420 80.2
Eucgr.K03365 Eucalyptus grandis HOM05D004820 ORTHO05D005946 1.4e-163 580.1 419 81.1
CiPaw.08G106000 Carya illinoinensis HOM05D004820 ORTHO05D005946 4.0e-163 578.6 418 80.4
Ciclev10020348m.g Citrus clementina HOM05D004820 ORTHO05D005946 4.0e-163 578.6 419 82.1
Medtr7g095000 Medicago truncatula HOM05D004820 ORTHO05D005946 1.2e-162 577.0 419 82.1
Gorai.004G216400 Gossypium raimondii HOM05D004820 ORTHO05D005946 1.5e-162 576.6 420 81.2
Gohir.A08G186300 Gossypium hirsutum HOM05D004820 ORTHO05D005946 5.8e-162 574.7 420 81.0
Gohir.D08G204400 Gossypium hirsutum HOM05D004820 ORTHO05D005946 7.5e-162 574.3 420 81.0
Gohir.D08G075000 Gossypium hirsutum HOM05D004820 ORTHO05D005946 3.7e-161 572.0 424 75.2
arahy.Tifrunner.gnm1.ann1.HALK3W Arachis hypogaea HOM05D004820 ORTHO05D005946 6.4e-161 571.2 427 78.5
arahy.Tifrunner.gnm1.ann1.JHLY8X Arachis hypogaea HOM05D004820 ORTHO05D005946 1.4e-160 570.1 427 78.2
Ca_08606_v3 Cicer arietinum L. HOM05D004820 ORTHO05D005946 1.4e-160 570.1 419 81.9
TWI14G0518 Tripterygium wilfordii HOM05D004820 ORTHO05D005946 3.2e-160 568.9 418 76.8
QL12p021397 Quercus lobata HOM05D004820 ORTHO05D005946 5.4e-160 568.2 420 77.6
arahy.Tifrunner.gnm1.ann1.NQ54M2 Arachis hypogaea HOM05D004820 ORTHO05D005946 7.0e-160 567.8 427 77.5
CANSAT25G3765 Cannabis sativa HOM05D004820 ORTHO05D005946 1.2e-159 567.0 424 81.4
TAR362G1079 Trochodendron aralioides HOM05D004820 ORTHO05D005946 1.6e-159 566.6 421 76.5
Gohir.A08G066300 Gossypium hirsutum HOM05D004820 ORTHO05D005946 3.5e-159 565.5 423 80.6
Nn4g26288 Nelumbo nucifera HOM05D004820 ORTHO05D005946 3.5e-159 565.5 423 77.3
PGR044G0684 Punica granatum HOM05D004820 ORTHO05D005946 1.3e-158 563.5 416 82.2
Duzib211G0468 Durio zibethinus HOM05D004820 ORTHO05D005946 2.5e-157 559.3 420 81.4
Phvul.005G035400 Phaseolus vulgaris HOM05D004820 ORTHO05D005946 3.3e-157 558.9 420 78.6
arahy.Tifrunner.gnm1.ann1.X2D3U2 Arachis hypogaea HOM05D004820 ORTHO05D005946 4.3e-157 558.5 427 77.3
SGA_v2.0_scaffold81G26015 Striga asiatica HOM05D004820 ORTHO05D005946 9.5e-157 557.4 420 74.0
CsaV3_7G028060 Cucumis sativus L. HOM05D004820 ORTHO05D005946 3.6e-156 555.4 422 79.9
Lalb_Chr06g0162971 Lupinus albus HOM05D004820 ORTHO05D005946 4.7e-156 555.1 420 78.3
Lj4g0024215 Lotus japonicus HOM05D004820 ORTHO05D005946 6.2e-156 554.7 420 76.2
MELO3C015826.2 Cucumis melo HOM05D004820 ORTHO05D005946 1.8e-155 553.1 427 77.8
MD11G1284100 Malus domestica HOM05D004820 ORTHO05D005946 1.8e-155 553.1 417 79.4
Psat3g064000 Pisum sativum HOM05D004820 ORTHO05D005946 1.8e-155 553.1 419 80.2
CAN.G590.6 Capsicum annuum HOM05D004820 ORTHO05D005946 4.0e-155 552.0 415 70.8
THA.LOC104801242 Tarenaya hassleriana HOM05D004820 ORTHO05D005946 6.8e-155 551.2 419 77.3
Gorai.004G079300 Gossypium raimondii HOM05D004820 ORTHO05D005946 1.2e-154 550.4 426 72.8
Migut.N02046 Erythranthe guttata HOM05D004820 ORTHO05D005946 1.5e-154 550.1 421 70.8
Oeu041704.1 Olea europaea HOM05D004820 ORTHO05D005946 2.6e-154 549.3 421 78.4
Solyc09g065280.4 Solanum lycopersicum HOM05D004820 ORTHO05D005946 4.9e-153 545.0 415 71.6
Cc03_g10020 Coffea canephora HOM05D004820 ORTHO05D005946 1.1e-152 543.9 420 75.2
THA.LOC104815940 Tarenaya hassleriana HOM05D004820 ORTHO05D005946 2.7e-151 539.3 418 74.4
Actinidia00769 Actinidia chinensis HOM05D004820 ORTHO05D005946 3.5e-151 538.9 424 77.6
MD03G1263300 Malus domestica HOM05D004820 ORTHO05D005946 2.3e-150 536.2 417 77.7
CSS0006431 Camellia sinensis var. sinensis HOM05D004820 ORTHO05D005946 9.5e-149 530.8 402 79.6
Sc05g0005630 Simmondsia chinensis HOM05D004820 ORTHO05D005946 2.8e-148 529.3 422 71.1
Sopen09g027030 Solanum pennellii HOM05D004820 ORTHO05D005946 8.1e-148 527.7 415 72.3
MSTRG.17449 Avicennia marina HOM05D004820 ORTHO05D005946 1.8e-147 526.6 419 77.8
PGSC0003DMG400019362 Solanum tuberosum HOM05D004820 ORTHO05D005946 3.4e-146 522.3 415 70.6
Sed0001544 Sechium edule HOM05D004820 ORTHO05D005946 5.8e-146 521.5 423 76.4
AL1G12610 Arabidopsis lyrata HOM05D004820 ORTHO05D005946 2.2e-145 519.6 424 71.7
PSO761G0350 Papaver somniferum HOM05D004820 ORTHO05D005946 6.4e-145 518.1 419 70.2
Aa31LG1G9390 Aethionema arabicum HOM05D004820 ORTHO05D005946 3.2e-144 515.8 426 70.4
PSO210G1690 Papaver somniferum HOM05D004820 ORTHO05D005946 6.6e-142 508.1 417 72.4
HPP92_018354 Vanilla planifolia HOM05D004820 ORTHO05D005946 2.5e-141 506.1 422 71.3
Lsat_1_v5_gn_5_187781 Lactuca sativa HOM05D004820 ORTHO05D005946 1.2e-140 503.8 399 73.9
Prupe.8G239700 Prunus persica HOM05D004820 ORTHO05D005946 2.1e-140 503.1 417 74.6
A09p68340 Brassica napus HOM05D004820 ORTHO05D005946 3.6e-140 502.3 423 65.7
QL03p020183 Quercus lobata HOM05D004820 ORTHO05D005946 3.2e-136 489.2 390 75.1
AUR62027118 Chenopodium quinoa HOM05D004820 ORTHO05D005946 4.2e-136 488.8 423 66.0
Carub.0001s0228 Capsella rubella HOM05D004820 ORTHO05D005946 2.1e-135 486.5 334 76.6
FvH4_2g23380 Fragaria vesca HOM05D004820 ORTHO05D005946 2.7e-135 486.1 418 70.8
CARHR002470 Cardamine hirsuta HOM05D004820 ORTHO05D005946 3.5e-135 485.7 336 75.3
EL10Ac8g18597 Beta vulgaris HOM05D004820 ORTHO05D005946 2.3e-134 483.0 420 64.3
C08p52910 Brassica napus HOM05D004820 ORTHO05D005946 2.3e-134 483.0 423 66.4
BcaC07g42265 Brassica carinata HOM05D004820 ORTHO05D005946 3.9e-134 482.3 419 65.9
FAN20G0972 Fragaria x ananassa HOM05D004820 ORTHO05D005946 3.3e-133 479.2 418 67.2
FAN15G1635 Fragaria x ananassa HOM05D004820 ORTHO05D005946 4.3e-133 478.8 418 71.1
BolC8t52807H Brassica oleracea HOM05D004820 ORTHO05D005946 9.6e-133 477.6 423 66.2
AUR62012894 Chenopodium quinoa HOM05D004820 ORTHO05D005946 1.3e-132 477.2 419 64.4
FAN24G1940 Fragaria x ananassa HOM05D004820 ORTHO05D005946 2.1e-132 476.5 436 68.1
HanXRQChr01g0003021 Helianthus annuus HOM05D004820 ORTHO05D005946 2.8e-132 476.1 398 71.6
Thhalv10009621m.g Eutrema salsugineum HOM05D004820 ORTHO05D005946 8.1e-132 474.6 327 76.1
AT1G03140 Arabidopsis thaliana HOM05D004820 ORTHO05D005946 1.1e-131 474.2 324 76.5
Ah.01g024010 Amaranthus hybridus HOM05D004820 ORTHO05D005946 1.8e-131 473.4 422 66.4
FAN27G0992 Fragaria x ananassa HOM05D004820 ORTHO05D005946 1.8e-131 473.4 427 69.3
RcHm_v2.0_Chr6g0290841 Rosa chinensis HOM05D004820 ORTHO05D005946 5.8e-130 468.4 423 69.5
SEGI_11361 Sequoiadendron giganteum HOM05D004820 ORTHO05D005946 2.4e-128 463.0 412 63.6
Sp1g02160 Schrenkiella parvula HOM05D004820 ORTHO05D005946 3.2e-128 462.6 327 74.9
A08p37470 Brassica napus HOM05D004820 ORTHO05D005946 1.2e-127 460.7 335 74.0
BraA08t35645Z Brassica rapa HOM05D004820 ORTHO05D005946 1.2e-127 460.7 335 74.0
BolC8t46841H Brassica oleracea HOM05D004820 ORTHO05D005946 2.1e-127 459.9 335 73.7
AL1G45340 Arabidopsis lyrata HOM05D004820 ORTHO05D005946 1.8e-126 456.8 424 62.3
ECA248G2754 Erigeron canadensis HOM05D004820 ORTHO05D005946 2.3e-126 456.4 425 64.7
Mapoly0140s0012 Marchantia polymorpha HOM05D004820 ORTHO05D005946 3.0e-126 456.1 423 58.9
Zm00001eb324990 Zea mays HOM05D004820 ORTHO05D005946 1.9e-125 453.4 442 59.7
C08p00420 Brassica napus HOM05D004820 ORTHO05D005946 2.5e-125 453.0 335 72.8
Zm00001eb426860 Zea mays HOM05D004820 ORTHO05D005946 6.2e-124 448.4 414 60.6
Os07g0571900 Oryza sativa ssp. japonica HOM05D004820 ORTHO05D005946 8.1e-124 448.0 439 62.9
Pp3c21_19780 Physcomitrium patens HOM05D004820 ORTHO05D005946 2.6e-122 443.0 423 58.9
Zm00001eb426810 Zea mays HOM05D004820 ORTHO05D005946 5.8e-122 441.8 416 60.1
Zm00001eb426820 Zea mays HOM05D004820 ORTHO05D005946 2.9e-121 439.5 416 60.6
Zm00001eb426800 Zea mays HOM05D004820 ORTHO05D005946 3.8e-121 439.1 414 59.4
Lj4g0011679 Lotus japonicus HOM05D004820 ORTHO05D005946 1.1e-120 437.6 405 66.7
Zm00001eb426850 Zea mays HOM05D004820 ORTHO05D005946 8.7e-118 427.9 395 60.0
SpUn0083_0020 Schrenkiella parvula HOM05D004820 ORTHO05D005946 2.5e-109 399.8 378 57.9
SMO356G0463 Selaginella moellendorffii HOM05D004820 ORTHO05D005946 7.4e-109 398.3 400 61.0
Sp5g11480 Schrenkiella parvula HOM05D004820 ORTHO05D005946 4.8e-108 395.6 379 57.5
PGSC0003DMG400010602 Solanum tuberosum HOM05D004820 ORTHO05D005946 5.9e-106 388.7 417 53.7
COL.COLO4_09079 Corchorus olitorius HOM05D004820 ORTHO05D005946 3.8e-105 386.0 454 59.9
Zm00001eb216840 Zea mays HOM05D004820 ORTHO05D005946 6.3e-100 368.6 417 57.1
PGSC0003DMG400010600 Solanum tuberosum HOM05D004820 ORTHO05D005946 1.2e-98 364.4 419 53.5
Lalb_Chr02g0142711 Lupinus albus HOM05D004820 ORTHO05D005946 9.4e-96 354.8 223 79.4
Rhsim01G0274100 Rhododendron simsii HOM05D004820 ORTHO05D005946 2.7e-95 353.2 427 54.3
CBR_g23335 Chara braunii HOM05D004820 ORTHO05D005946 2.4e-91 340.1 446 54.0
AT1G54590 Arabidopsis thaliana HOM05D004820 ORTHO05D005946 2.0e-90 337.0 293 64.5
Solyc07g052190.1 Solanum lycopersicum HOM05D004820 ORTHO05D005946 6.7e-86 322.0 285 60.4
Oeu028072.3 Olea europaea HOM05D004820 ORTHO05D005946 1.4e-83 314.3 283 75.6
Sopen07g025700 Solanum pennellii HOM05D004820 ORTHO05D005946 4.8e-76 289.3 342 49.7
CAN.G198.19 Capsicum annuum HOM05D004820 ORTHO05D005946 2.4e-75 287.0 354 50.0
SHI31236 Sapria himalayana HOM05D004820 ORTHO05D005946 2.4e-75 287.0 282 59.6
GSVIVG01001158001 Vitis vinifera HOM05D004820 ORTHO05D005946 2.2e-73 280.4 160 86.2
Zm00001eb426870 Zea mays HOM05D004820 ORTHO05D005946 2.1e-71 273.9 168 80.4
Sopen07g025830 Solanum pennellii HOM05D004820 ORTHO05D005946 1.8e-67 260.8 253 56.9
Cpa.g.sc52.46 Carica papaya HOM05D004820 ORTHO05D005946 6.8e-62 242.3 139 86.3
Solyc07g052050.2 Solanum lycopersicum HOM05D004820 ORTHO05D005946 9.2e-59 231.9 158 70.9
SHI31234 Sapria himalayana HOM05D004820 ORTHO05D005946 3.6e-55 219.9 115 92.2
HanXRQChr15g0487721 Helianthus annuus HOM05D004820 ORTHO05D005946 6.4e-52 209.1 160 65.6
Zm00001eb426830 Zea mays HOM05D004820 ORTHO05D005946 1.2e-45 188.3 116 81.9
Sopen07g025690 Solanum pennellii HOM05D004820 ORTHO05D005946 4.4e-45 186.4 123 76.4
Lj1g0027313 Lotus japonicus HOM05D004820 ORTHO05D005946 9.2e-43 178.7 159 59.1
Os03g0701100 Oryza sativa ssp. japonica HOM05D004820 ORTHO05D005946 9.2e-43 178.7 288 45.5
Sopen07g025610 Solanum pennellii HOM05D004820 ORTHO05D005946 5.6e-40 169.5 256 42.6
MCO06G052 Micromonas commoda HOM05D004820 ORTHO05D005946 1.8e-38 164.5 156 51.3
Cre13.g567750 Chlamydomonas reinhardtii HOM05D004820 ORTHO05D005946 4.9e-36 156.4 304 37.8
Nitab4.5_0003852g0050 Nicotiana tabacum HOM05D004820 ORTHO05D005946 7.6e-29 132.5 168 47.6
BraA09t42170Z Brassica rapa HOM05D004820 ORTHO05D005946 1.2e-26 125.2 156 52.6
CARHR182160 Cardamine hirsuta HOM05D004820 ORTHO05D005946 1.6e-26 124.8 116 56.0
Gohir.D05G222300 Gossypium hirsutum HOM05D004820 ORTHO05D005946 5.1e-25 119.8 64 85.9
vmacro14915 Vaccinium macrocarpon HOM05D004820 ORTHO05D005946 5.1e-25 119.8 141 63.1
Zm00001eb078380 Zea mays HOM05D004820 ORTHO05D005946 6.6e-25 119.4 72 80.6
Gohir.D11G242500 Gossypium hirsutum HOM05D004820 ORTHO05D005946 1.5e-24 118.2 64 84.4
Gorai.009G229700 Gossypium raimondii HOM05D004820 ORTHO05D005946 1.5e-24 118.2 64 84.4
Gorai.011G187700 Gossypium raimondii HOM05D004820 ORTHO05D005946 7.3e-24 115.9 64 82.8
TAR365G1077 Trochodendron aralioides HOM05D004820 ORTHO05D005946 1.6e-23 114.8 101 60.4
Zm00001eb180190 Zea mays HOM05D004820 ORTHO05D005946 2.1e-23 114.4 68 80.9
Zm00001eb017440 Zea mays HOM05D004820 ORTHO05D005946 4.0e-22 110.2 66 80.3
Zm00001eb368520 Zea mays HOM05D004820 ORTHO05D005946 4.0e-22 110.2 68 79.4
Nitab4.5_0003327g0040 Nicotiana tabacum HOM05D004820 ORTHO05D005946 2.6e-21 107.5 160 45.0
Nn4g23784 Nelumbo nucifera HOM05D004820 ORTHO05D005946 5.1e-17 93.2 108 50.9
Dinv32923 Davidia involucrata HOM05D004820 ORTHO05D005946 1.1e-11 75.5 49 79.6
C06p09790 Brassica napus HOM05D004820 ORTHO05D001418 1.1e-08 65.5 70 48.6
BolC6t36051H Brassica oleracea HOM05D004820 ORTHO05D001418 1.1e-08 65.5 70 48.6


User provided reference genes

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