Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.005G151700 Populus trichocarpa HOM05D001366 ORTHO05D005449 7.8e-55 216.9 107 100.0
Glyma.02G216100 Glycine max HOM05D001366 ORTHO05D005449 2.1e-52 208.8 107 95.3
Phvul.008G183300 Phaseolus vulgaris HOM05D001366 ORTHO05D005449 2.1e-52 208.8 107 95.3
LjContig00408g0006754 Lotus japonicus HOM05D001366 ORTHO05D005449 2.8e-52 208.4 107 95.3
FvH4_5g34180 Fragaria vesca HOM05D001366 ORTHO05D005449 6.2e-52 207.2 107 94.4
FAN18G2982 Fragaria x ananassa HOM05D001366 ORTHO05D005449 6.2e-52 207.2 107 94.4
Prupe.1G536300 Prunus persica HOM05D001366 ORTHO05D005449 1.1e-51 206.5 107 94.4
Medtr7g005540 Medicago truncatula HOM05D001366 ORTHO05D005449 1.4e-51 206.1 107 93.5
Cpa.g.sc21.43 Carica papaya HOM05D001366 ORTHO05D005449 1.8e-51 205.7 107 94.4
Manes.18G057000 Manihot esculenta HOM05D001366 ORTHO05D005449 2.3e-51 205.3 107 93.5
FAN04G2369 Fragaria x ananassa HOM05D001366 ORTHO05D005449 4.0e-51 204.5 107 92.5
Psat2g064960 Pisum sativum HOM05D001366 ORTHO05D005449 4.0e-51 204.5 107 93.5
GSVIVG01009213001 Vitis vinifera HOM05D001366 ORTHO05D005449 4.0e-51 204.5 107 92.5
RcHm_v2.0_Chr7g0233761 Rosa chinensis HOM05D001366 ORTHO05D005449 5.2e-51 204.1 107 93.5
CANSAT25G2801 Cannabis sativa HOM05D001366 ORTHO05D005449 8.9e-51 203.4 107 92.5
Glyma.14G183100 Glycine max HOM05D001366 ORTHO05D005449 8.9e-51 203.4 107 93.5
Lalb_Chr23g0269931 Lupinus albus HOM05D001366 ORTHO05D005449 8.9e-51 203.4 107 93.5
CARHR231830 Cardamine hirsuta HOM05D001366 ORTHO05D005449 1.5e-50 202.6 107 92.5
MBI19_g32700_MAGBIO Magnolia biondii HOM05D001366 ORTHO05D005449 1.5e-50 202.6 107 92.5
Lalb_Chr11g0064851 Lupinus albus HOM05D001366 ORTHO05D005449 2.0e-50 202.2 107 92.5
TPR.G15622 Trifolium pratense HOM05D001366 ORTHO05D005449 2.0e-50 202.2 105 93.3
PSO013G0324 Papaver somniferum HOM05D001366 ORTHO05D005449 2.6e-50 201.8 107 90.7
PSO832G3977 Papaver somniferum HOM05D001366 ORTHO05D005449 3.4e-50 201.4 107 89.7
Rhsim07G0213700 Rhododendron simsii HOM05D001366 ORTHO05D005449 3.4e-50 201.4 107 91.6
Aqoxy2G03242 Aquilegia oxysepala HOM05D001366 ORTHO05D005449 4.4e-50 201.1 107 90.7
Gorai.009G278800 Gossypium raimondii HOM05D001366 ORTHO05D005449 4.4e-50 201.1 107 91.6
Sed0015347 Sechium edule HOM05D001366 ORTHO05D005449 4.4e-50 201.1 107 90.7
BcaC09g50868 Brassica carinata HOM05D001366 ORTHO05D003220 5.8e-50 200.7 106 91.5
C01p19760 Brassica napus HOM05D001366 ORTHO05D003220 5.8e-50 200.7 106 91.5
BolC1t01904H Brassica oleracea HOM05D001366 ORTHO05D003220 5.8e-50 200.7 106 91.5
COL.COLO4_35286 Corchorus olitorius HOM05D001366 ORTHO05D005449 5.8e-50 200.7 107 91.6
CsaV3_2G033370 Cucumis sativus L. HOM05D001366 ORTHO05D005449 5.8e-50 200.7 107 89.7
DCAR_006444 Daucus carota HOM05D001366 ORTHO05D005449 5.8e-50 200.7 107 91.6
PGR042G3224 Punica granatum HOM05D001366 ORTHO05D005449 5.8e-50 200.7 107 91.6
Aa31LG4G9540 Aethionema arabicum HOM05D001366 ORTHO05D005449 7.5e-50 200.3 107 91.6
Carub.0007s1663 Capsella rubella HOM05D001366 ORTHO05D005449 7.5e-50 200.3 107 91.6
ClCG11G014700 Citrullus lanatus HOM05D001366 ORTHO05D005449 7.5e-50 200.3 107 90.7
Lalb_Chr08g0242611 Lupinus albus HOM05D001366 ORTHO05D005449 7.5e-50 200.3 107 91.6
PSO761G0276 Papaver somniferum HOM05D001366 ORTHO05D005449 7.5e-50 200.3 107 89.7
Hma1.2p1_0125F.1_g058680 Hydrangea macrophylla HOM05D001366 ORTHO05D005449 9.9e-50 199.9 107 90.7
Sed0016266 Sechium edule HOM05D001366 ORTHO05D005449 9.9e-50 199.9 107 89.7
Actinidia29656 Actinidia chinensis HOM05D001366 ORTHO05D005449 1.3e-49 199.5 107 90.7
Ciclev10002917m.g Citrus clementina HOM05D001366 ORTHO05D005449 1.3e-49 199.5 107 90.7
Aqoxy6G00666 Aquilegia oxysepala HOM05D001366 ORTHO05D005449 1.7e-49 199.1 107 88.8
AL7G28780 Arabidopsis lyrata HOM05D001366 ORTHO05D005449 1.7e-49 199.1 107 90.7
AT4G24440 Arabidopsis thaliana HOM05D001366 ORTHO05D005449 1.7e-49 199.1 107 90.7
arahy.Tifrunner.gnm1.ann1.8785AP Arachis hypogaea HOM05D001366 ORTHO05D005449 1.7e-49 199.1 107 90.7
arahy.Tifrunner.gnm1.ann1.CRNC3Y Arachis hypogaea HOM05D001366 ORTHO05D005449 1.7e-49 199.1 107 90.7
CiPaw.08G057200 Carya illinoinensis HOM05D001366 ORTHO05D005449 1.7e-49 199.1 107 89.7
Thhalv10026637m.g Eutrema salsugineum HOM05D001366 ORTHO05D005449 1.7e-49 199.1 107 90.7
Gohir.A05G264200 Gossypium hirsutum HOM05D001366 ORTHO05D005449 1.7e-49 199.1 107 90.7
Nn1g05642 Nelumbo nucifera HOM05D001366 ORTHO05D005449 1.7e-49 199.1 107 90.7
Sp7g22400 Schrenkiella parvula HOM05D001366 ORTHO05D005449 1.7e-49 199.1 107 90.7
TWI09G0135 Tripterygium wilfordii HOM05D001366 ORTHO05D005449 1.7e-49 199.1 107 89.7
arahy.Tifrunner.gnm1.ann1.HU70H8 Arachis hypogaea HOM05D001366 ORTHO05D005449 2.2e-49 198.7 107 90.7
BcaC06g32884 Brassica carinata HOM05D001366 ORTHO05D005449 2.2e-49 198.7 107 90.7
A01p15810 Brassica napus HOM05D001366 ORTHO05D003220 2.2e-49 198.7 105 91.4
BolC7t45851H Brassica oleracea HOM05D001366 ORTHO05D005449 2.2e-49 198.7 107 90.7
BraA01t01516Z Brassica rapa HOM05D001366 ORTHO05D003220 2.2e-49 198.7 105 91.4
Gohir.D05G266700 Gossypium hirsutum HOM05D001366 ORTHO05D005449 2.2e-49 198.7 107 90.7
PSO700G0345 Papaver somniferum HOM05D001366 ORTHO05D005449 2.9e-49 198.4 107 88.8
THA.LOC104815469 Tarenaya hassleriana HOM05D001366 ORTHO05D005449 2.9e-49 198.4 107 90.7
HPP92_010288 Vanilla planifolia HOM05D001366 ORTHO05D005449 3.7e-49 198.0 106 90.6
arahy.Tifrunner.gnm1.ann1.T41BVH Arachis hypogaea HOM05D001366 ORTHO05D005449 4.9e-49 197.6 107 90.7
BcaNung05637 Brassica carinata HOM05D001366 ORTHO05D005449 4.9e-49 197.6 107 89.7
A03p55290 Brassica napus HOM05D001366 ORTHO05D005449 4.9e-49 197.6 107 89.7
A08p21460 Brassica napus HOM05D001366 ORTHO05D005449 4.9e-49 197.6 107 90.7
C07p53590 Brassica napus HOM05D001366 ORTHO05D005449 4.9e-49 197.6 107 89.7
BolC8t48576H Brassica oleracea HOM05D001366 ORTHO05D005449 4.9e-49 197.6 107 90.7
BraA03t14588Z Brassica rapa HOM05D001366 ORTHO05D005449 4.9e-49 197.6 107 89.7
BraA08t34095Z Brassica rapa HOM05D001366 ORTHO05D005449 4.9e-49 197.6 107 90.7
Haze_22489 Corylus avellana HOM05D001366 ORTHO05D005449 4.9e-49 197.6 107 89.7
MELO3C008106.2 Cucumis melo HOM05D001366 ORTHO05D005449 4.9e-49 197.6 107 88.8
TWI73G1055 Tripterygium wilfordii HOM05D001366 ORTHO05D005449 6.4e-49 197.2 107 88.8
ATR0691G175 Amborella trichopoda HOM05D001366 ORTHO05D005449 8.3e-49 196.8 107 89.7
CsaV3_2G033350 Cucumis sativus L. HOM05D001366 ORTHO05D005449 1.1e-48 196.4 107 89.7
Eucgr.F00436 Eucalyptus grandis HOM05D001366 ORTHO05D005449 1.1e-48 196.4 107 89.7
CiPaw.07G162800 Carya illinoinensis HOM05D001366 ORTHO05D005449 1.4e-48 196.1 107 88.8
EL10Ac8g20405 Beta vulgaris HOM05D001366 ORTHO05D005449 1.9e-48 195.7 107 87.9
EL10Ac9g20840 Beta vulgaris HOM05D001366 ORTHO05D005449 1.9e-48 195.7 107 88.8
Atru.chr11.619 Acer truncatum HOM05D001366 ORTHO05D005449 2.4e-48 195.3 107 87.9
Gohir.D05G220900 Gossypium hirsutum HOM05D001366 ORTHO05D005449 2.4e-48 195.3 107 88.8
Gorai.009G228000 Gossypium raimondii HOM05D001366 ORTHO05D005449 2.4e-48 195.3 107 88.8
Sabra05G0119200 Salix brachista HOM05D001366 ORTHO05D005449 2.4e-48 195.3 133 77.4
TAR625G0060 Trochodendron aralioides HOM05D001366 ORTHO05D005449 2.4e-48 195.3 107 88.8
Atru.chr13.973 Acer truncatum HOM05D001366 ORTHO05D005449 3.2e-48 194.9 107 87.9
Medtr5g066740 Medicago truncatula HOM05D001366 ORTHO05D005449 4.1e-48 194.5 107 86.9
THA.LOC104799853 Tarenaya hassleriana HOM05D001366 ORTHO05D005449 4.1e-48 194.5 107 88.8
Thecc.08G074000 Theobroma cacao HOM05D001366 ORTHO05D005449 4.1e-48 194.5 107 88.8
HanXRQChr10g0277741 Helianthus annuus HOM05D001366 ORTHO05D005449 5.4e-48 194.1 107 87.9
Peaxi162Scf00160g00913 Petunia axillaris HOM05D001366 ORTHO05D005449 5.4e-48 194.1 107 88.8
Lsat_1_v5_gn_6_107360 Lactuca sativa HOM05D001366 ORTHO05D005449 9.2e-48 193.4 106 86.8
Hund07854 Selenicereus undatus HOM05D001366 ORTHO05D005449 9.2e-48 193.4 107 87.9
TPR.G38776 Trifolium pratense HOM05D001366 ORTHO05D005449 9.2e-48 193.4 107 88.8
Duzib041G0019 Durio zibethinus HOM05D001366 ORTHO05D005449 2.1e-47 192.2 107 86.0
CSS0026904 Camellia sinensis var. sinensis HOM05D001366 ORTHO05D005449 3.5e-47 191.4 107 87.9
CAN.G1104.8 Capsicum annuum HOM05D001366 ORTHO05D005449 3.5e-47 191.4 107 87.9
Cc10_g08370 Coffea canephora HOM05D001366 ORTHO05D005449 3.5e-47 191.4 107 87.9
Nitab4.5_0000885g0060 Nicotiana tabacum HOM05D001366 ORTHO05D005449 3.5e-47 191.4 107 86.9
Solyc12g088030.2 Solanum lycopersicum HOM05D001366 ORTHO05D005449 3.5e-47 191.4 107 87.9
Sopen12g030060 Solanum pennellii HOM05D001366 ORTHO05D005449 3.5e-47 191.4 107 87.9
Os05g0107700 Oryza sativa ssp. japonica HOM05D001366 ORTHO05D005449 6.0e-47 190.7 107 86.9
Ah.01g003970 Amaranthus hybridus HOM05D001366 ORTHO05D005449 7.8e-47 190.3 107 86.9
Oeu040884.1 Olea europaea HOM05D001366 ORTHO05D005449 1.0e-46 189.9 107 86.9
Rhsim02G0071900 Rhododendron simsii HOM05D001366 ORTHO05D005449 1.0e-46 189.9 123 78.9
PGSC0003DMG400002052 Solanum tuberosum HOM05D001366 ORTHO05D005449 1.0e-46 189.9 107 86.9
CSS0031876 Camellia sinensis var. sinensis HOM05D001366 ORTHO05D005449 1.7e-46 189.1 107 86.0
ECA240G3991 Erigeron canadensis HOM05D001366 ORTHO05D005449 2.3e-46 188.7 107 85.0
Nitab4.5_0000354g0080 Nicotiana tabacum HOM05D001366 ORTHO05D005449 3.0e-46 188.3 107 86.0
Zm00001eb356100 Zea mays HOM05D001366 ORTHO05D005449 3.0e-46 188.3 107 85.0
HanXRQChr03g0063191 Helianthus annuus HOM05D001366 ORTHO05D005449 3.9e-46 188.0 107 85.0
Gohir.A05G216500 Gossypium hirsutum HOM05D001366 ORTHO05D005449 6.6e-46 187.2 117 81.2
TWI56G0439 Tripterygium wilfordii HOM05D001366 ORTHO05D005449 1.5e-45 186.0 107 83.2
MSTRG.5323 Avicennia marina HOM05D001366 ORTHO05D005449 1.9e-45 185.7 107 83.2
SalBow3G1925 Salvia bowleyana HOM05D001366 ORTHO05D005449 5.6e-45 184.1 107 85.0
MSTRG.27758 Avicennia marina HOM05D001366 ORTHO05D005449 1.6e-44 182.6 107 82.2
SalBow6G3832 Salvia bowleyana HOM05D001366 ORTHO05D005449 2.1e-44 182.2 107 84.1
SalBow6G5818 Salvia bowleyana HOM05D001366 ORTHO05D005449 2.1e-44 182.2 107 84.1
Migut.N01147 Erythranthe guttata HOM05D001366 ORTHO05D005449 3.6e-44 181.4 107 83.2
Zm00001eb139900 Zea mays HOM05D001366 ORTHO05D005449 8.1e-44 180.3 104 82.7
SGA_v2.0_scaffold337G49194 Striga asiatica HOM05D001366 ORTHO05D005449 1.1e-43 179.9 107 82.2
Os01g0970500 Oryza sativa ssp. japonica HOM05D001366 ORTHO05D005449 1.4e-43 179.5 104 81.7
MD08G1203900 Malus domestica HOM05D001366 ORTHO05D005449 5.2e-43 177.6 94 90.4
unitig_22.g6842 Utricularia gibba HOM05D001366 ORTHO05D005449 5.2e-43 177.6 107 79.4
SGA_v2.0_scaffold219G42523 Striga asiatica HOM05D001366 ORTHO05D005449 1.5e-42 176.0 105 81.0
MSTRG.16686 Avicennia marina HOM05D001366 ORTHO05D005449 3.4e-42 174.9 106 77.4
Psat0s2399g0160 Pisum sativum HOM05D001366 ORTHO05D005449 7.6e-42 173.7 104 76.9
SHI29728 Sapria himalayana HOM05D001366 ORTHO05D005449 1.3e-41 172.9 107 80.4
AUR62017035 Chenopodium quinoa HOM05D001366 ORTHO05D005449 2.9e-41 171.8 94 88.3
Actinidia19254 Actinidia chinensis HOM05D001366 ORTHO05D005449 7.1e-40 167.2 107 73.8
ECA246G1742 Erigeron canadensis HOM05D001366 ORTHO05D005449 2.1e-39 165.6 98 79.6
Oeu038169.3 Olea europaea HOM05D001366 ORTHO05D005449 8.6e-38 160.2 165 56.4
TAR381G0322 Trochodendron aralioides HOM05D001366 ORTHO05D005449 2.5e-37 158.7 107 72.9
Duzib116G0949 Durio zibethinus HOM05D001366 ORTHO05D005449 2.4e-35 152.1 107 72.9
Mapoly0012s0108 Marchantia polymorpha HOM05D001366 ORTHO05D005449 9.0e-35 150.2 107 63.6
Lsat_1_v5_gn_7_43741 Lactuca sativa HOM05D001366 ORTHO05D005449 1.2e-34 149.8 83 85.5
Pp3c15_13540 Physcomitrium patens HOM05D001366 ORTHO05D005449 1.2e-34 149.8 107 65.4
Pp3c9_10830 Physcomitrium patens HOM05D001366 ORTHO05D005449 2.0e-34 149.1 107 65.4
AagrBONN_evm.TU.Sc2ySwM_228.5579 Anthoceros agrestis HOM05D001366 ORTHO05D005449 2.9e-33 145.2 107 59.8
AagrBONN_evm.TU.Sc2ySwM_228.3950 Anthoceros agrestis HOM05D001366 ORTHO05D005449 8.4e-33 143.7 107 59.8
Actinidia19617 Actinidia chinensis HOM05D001366 ORTHO05D005449 2.1e-31 139.0 73 90.4
SMO169G0007 Selaginella moellendorffii HOM05D001366 ORTHO05D005449 2.7e-31 138.7 106 58.5
RcHm_v2.0_Chr5g0012851 Rosa chinensis HOM05D001366 ORTHO05D005449 2.1e-28 129.0 107 59.8
Migut.B00439 Erythranthe guttata HOM05D001366 ORTHO05D005449 4.5e-26 121.3 107 57.9
unitig_8.g3420 Utricularia gibba HOM05D001366 ORTHO05D005449 4.2e-24 114.8 94 64.9
Ca_08744_v3 Cicer arietinum L. HOM05D001366 ORTHO05D005449 2.1e-23 112.5 60 95.0
VMungo0647G1399 Vigna mungo HOM05D001366 ORTHO05D005449 2.1e-23 112.5 60 95.0
Dinv42590 Davidia involucrata HOM05D001366 ORTHO05D005449 6.0e-23 110.9 83 72.3
vmacro04625 Vaccinium macrocarpon HOM05D001366 ORTHO05D005449 1.3e-22 109.8 60 91.7
Haze_27711 Corylus avellana HOM05D001366 ORTHO05D005449 3.0e-22 108.6 100 50.0
Lsat_1_v5_gn_4_60280 Lactuca sativa HOM05D001366 ORTHO05D005449 3.9e-22 108.2 66 78.8
QL09p018667 Quercus lobata HOM05D001366 ORTHO05D005449 1.9e-21 105.9 60 88.3
AagrBONN_evm.TU.Sc2ySwM_368.1269 Anthoceros agrestis HOM05D001366 ORTHO05D005449 4.3e-21 104.8 105 45.7
C06p07570 Brassica napus HOM05D001366 ORTHO05D005449 1.5e-18 96.3 107 56.1
BolC6t35845H Brassica oleracea HOM05D001366 ORTHO05D005449 1.5e-18 96.3 107 56.1
Mapoly0067s0078 Marchantia polymorpha HOM05D001366 ORTHO05D005449 3.4e-18 95.1 98 48.0
BcaC08g43388 Brassica carinata HOM05D001366 ORTHO05D005449 2.2e-17 92.4 83 57.8
AUR62014838 Chenopodium quinoa HOM05D001366 ORTHO05D005449 2.1e-15 85.9 62 71.0
HanXRQChr05g0143271 Helianthus annuus HOM05D001366 ORTHO05D005449 1.8e-14 82.8 51 78.4
Cre10.g424150 Chlamydomonas reinhardtii HOM05D001366 ORTHO05D005449 1.9e-13 79.3 100 37.0
PRCOL_00001724 Prasinoderma coloniale HOM05D001366 ORTHO05D005449 6.9e-11 70.9 92 33.7
Lsat_1_v5_gn_8_150280 Lactuca sativa HOM05D001675 ORTHO05D004161 2.0e-10 69.3 47 72.3
TAR374G0947 Trochodendron aralioides HOM05D000025 ORTHO05D000040 8.4e-09 63.9 34 76.5
HanXRQChr11g0353851 Helianthus annuus HOM05D001366 ORTHO05D005449 1.9e-08 62.8 36 80.6
Lsat_1_v5_gn_8_45161 Lactuca sativa HOM05D001675 ORTHO05D001808 3.0e-06 55.5 38 73.7


User provided reference genes

Program Settings