Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.004G022500 Populus trichocarpa HOM05D006350 ORTHO05D007850 0.0e+00 1329.7 648 100.0
Sabra04G0012300 Salix brachista HOM05D006350 ORTHO05D007850 0.0e+00 1191.8 704 85.1
Manes.17G035000 Manihot esculenta HOM05D006350 ORTHO05D007850 5.2e-287 990.7 661 74.4
QL05p075148 Quercus lobata HOM05D006350 ORTHO05D007850 1.2e-275 953.0 681 70.2
QL93p0073_0722 Quercus lobata HOM05D006350 ORTHO05D007850 7.8e-275 950.3 681 69.6
CiPaw.09G087000 Carya illinoinensis HOM05D006350 ORTHO05D007850 1.9e-273 945.7 663 70.7
GSVIVG01012630001 Vitis vinifera HOM05D006350 ORTHO05D007850 7.3e-273 943.7 680 69.0
MD10G1314700 Malus domestica HOM05D006350 ORTHO05D007850 6.0e-267 924.1 669 69.1
Thecc.06G214100 Theobroma cacao HOM05D006350 ORTHO05D007850 1.5e-265 919.5 652 69.6
CANSAT80G1390 Cannabis sativa HOM05D006350 ORTHO05D007850 8.1e-264 913.7 671 67.8
Ciclev10014587m.g Citrus clementina HOM05D006350 ORTHO05D007850 4.0e-263 911.4 650 70.2
PGR004G2689 Punica granatum HOM05D006350 ORTHO05D007850 1.5e-262 909.4 668 67.2
Prupe.4G026100 Prunus persica HOM05D006350 ORTHO05D007850 1.4e-260 902.9 671 67.7
RcHm_v2.0_Chr5g0003961 Rosa chinensis HOM05D006350 ORTHO05D007850 4.6e-259 897.9 653 68.1
COL.COLO4_31726 Corchorus olitorius HOM05D006350 ORTHO05D007850 6.0e-259 897.5 648 68.1
FvH4_3g02650 Fragaria vesca HOM05D006350 ORTHO05D007850 6.0e-259 897.5 647 68.5
FAN21G3377 Fragaria x ananassa HOM05D006350 ORTHO05D007850 1.0e-258 896.7 646 68.4
Eucgr.D00813 Eucalyptus grandis HOM05D006350 ORTHO05D007850 1.3e-258 896.3 653 67.7
TWI63G1388 Tripterygium wilfordii HOM05D006350 ORTHO05D007850 5.1e-258 894.4 652 69.2
CSS0026996 Camellia sinensis var. sinensis HOM05D006350 ORTHO05D007850 9.6e-257 890.2 674 65.7
TAR629G2651 Trochodendron aralioides HOM05D006350 ORTHO05D007850 9.6e-257 890.2 678 65.3
THA.LOC104821036 Tarenaya hassleriana HOM05D006350 ORTHO05D007850 3.6e-256 888.3 657 67.0
Gorai.011G016800 Gossypium raimondii HOM05D006350 ORTHO05D007850 6.2e-256 887.5 651 69.0
Lj1g0012123 Lotus japonicus HOM05D006350 ORTHO05D007850 8.1e-256 887.1 642 68.4
Gohir.D10G015200 Gossypium hirsutum HOM05D006350 ORTHO05D007850 1.8e-255 885.9 651 68.7
Nitab4.5_0000091g0460 Nicotiana tabacum HOM05D006350 ORTHO05D007850 3.4e-254 881.7 651 67.3
CSS0007285 Camellia sinensis var. sinensis HOM05D006350 ORTHO05D007850 5.8e-254 880.9 674 65.3
Glyma.04G064300 Glycine max HOM05D006350 ORTHO05D007850 3.8e-253 878.2 653 66.9
Solyc03g031820.4 Solanum lycopersicum HOM05D006350 ORTHO05D007850 8.4e-253 877.1 646 67.6
Sopen03g005680 Solanum pennellii HOM05D006350 ORTHO05D007850 1.9e-252 875.9 646 67.3
Gohir.A10G015200 Gossypium hirsutum HOM05D006350 ORTHO05D007850 2.4e-252 875.5 651 68.0
Phvul.002G048900 Phaseolus vulgaris HOM05D006350 ORTHO05D007850 1.6e-251 872.8 652 66.9
Peaxi162Scf00521g00815 Petunia axillaris HOM05D006350 ORTHO05D007850 7.9e-251 870.5 636 67.3
Ca_07431_v3 Cicer arietinum L. HOM05D006350 ORTHO05D007850 1.5e-249 866.3 649 67.2
VMungo1215G2459 Vigna mungo HOM05D006350 ORTHO05D007850 1.5e-249 866.3 656 66.2
Nitab4.5_0002613g0020 Nicotiana tabacum HOM05D006350 ORTHO05D007850 5.6e-249 864.4 647 66.3
ClCG01G022180 Citrullus lanatus HOM05D006350 ORTHO05D007850 9.6e-249 863.6 661 64.4
C03p08000 Brassica napus HOM05D006350 ORTHO05D007850 6.2e-248 860.9 637 66.2
Medtr7g050860 Medicago truncatula HOM05D006350 ORTHO05D007850 1.4e-247 859.8 643 66.9
Rhsim02G0112000 Rhododendron simsii HOM05D006350 ORTHO05D007850 4.0e-247 858.2 664 64.9
SGA_v2.0_scaffold114G32022 Striga asiatica HOM05D006350 ORTHO05D007850 5.3e-247 857.8 660 65.6
CAN.G404.6 Capsicum annuum HOM05D006350 ORTHO05D007850 6.9e-247 857.4 654 65.6
Thhalv10012972m.g Eutrema salsugineum HOM05D006350 ORTHO05D007850 9.0e-247 857.1 642 65.4
arahy.Tifrunner.gnm1.ann1.SC0FBD Arachis hypogaea HOM05D006350 ORTHO05D007850 2.6e-246 855.5 647 66.3
AL6G25990 Arabidopsis lyrata HOM05D006350 ORTHO05D007850 4.5e-246 854.7 641 65.7
Duzib160G0024 Durio zibethinus HOM05D006350 ORTHO05D007850 7.6e-246 854.0 651 66.8
BolC3t13297H Brassica oleracea HOM05D006350 ORTHO05D007850 1.3e-245 853.2 637 65.6
Atru.chr10.2148 Acer truncatum HOM05D006350 ORTHO05D007850 1.7e-245 852.8 593 71.3
DCAR_008125 Daucus carota HOM05D006350 ORTHO05D007850 2.2e-245 852.4 677 63.7
AT5G15170 Arabidopsis thaliana HOM05D006350 ORTHO05D007850 2.9e-245 852.0 641 65.1
Carub.0006s1334 Capsella rubella HOM05D006350 ORTHO05D007850 4.9e-245 851.3 642 65.7
AUR62012643 Chenopodium quinoa HOM05D006350 ORTHO05D007850 8.4e-245 850.5 675 61.6
A03p07020 Brassica napus HOM05D006350 ORTHO05D007850 1.1e-244 850.1 637 65.5
MSTRG.15966 Avicennia marina HOM05D006350 ORTHO05D007850 1.9e-244 849.4 656 65.5
Sp6g28900 Schrenkiella parvula HOM05D006350 ORTHO05D007850 5.5e-244 847.8 641 65.1
Dinv20017 Davidia involucrata HOM05D006350 ORTHO05D007850 9.3e-244 847.0 624 66.8
vmacro15831 Vaccinium macrocarpon HOM05D006350 ORTHO05D007850 3.5e-243 845.1 767 58.0
MBI02_g10104_MAGBIO Magnolia biondii HOM05D006350 ORTHO05D007850 5.1e-242 841.3 677 62.0
arahy.Tifrunner.gnm1.ann1.QV9JTX Arachis hypogaea HOM05D006350 ORTHO05D007850 1.9e-241 839.3 687 62.4
PSO541G3631 Papaver somniferum HOM05D006350 ORTHO05D007850 2.5e-241 839.0 667 63.3
Migut.M01281 Erythranthe guttata HOM05D006350 ORTHO05D007850 4.3e-241 838.2 658 64.0
Aqoxy4G01993 Aquilegia oxysepala HOM05D006350 ORTHO05D007850 2.1e-240 835.9 646 63.9
Aa31LG11G14390 Aethionema arabicum HOM05D006350 ORTHO05D007850 8.1e-240 833.9 643 64.2
CsaV3_6G049260 Cucumis sativus L. HOM05D006350 ORTHO05D007850 1.1e-239 833.6 647 63.8
PSO675G5568 Papaver somniferum HOM05D006350 ORTHO05D007850 4.0e-239 831.6 667 62.7
ECA248G2377 Erigeron canadensis HOM05D006350 ORTHO05D007850 1.3e-237 826.6 646 63.8
HanXRQChr16g0504561 Helianthus annuus HOM05D006350 ORTHO05D007850 5.7e-233 811.2 648 62.8
Lalb_Chr09g0319631 Lupinus albus HOM05D006350 ORTHO05D007850 7.4e-233 810.8 642 64.0
BcaB01g05074 Brassica carinata HOM05D006350 ORTHO05D007850 1.4e-228 796.6 642 61.8
CARHR198140 Cardamine hirsuta HOM05D006350 ORTHO05D007850 2.5e-228 795.8 582 67.2
TPR.G10193 Trifolium pratense HOM05D006350 ORTHO05D007850 1.6e-227 793.1 606 66.2
FAN25G1413 Fragaria x ananassa HOM05D006350 ORTHO05D007850 8.7e-226 787.3 651 62.2
EL10Ac8g19892 Beta vulgaris HOM05D006350 ORTHO05D007850 1.3e-224 783.5 662 60.4
Sc05g0008900 Simmondsia chinensis HOM05D006350 ORTHO05D007850 1.9e-220 769.6 508 72.2
Sed0019871 Sechium edule HOM05D006350 ORTHO05D007850 1.4e-218 763.5 487 73.1
Os07g0530100 Oryza sativa ssp. japonica HOM05D006350 ORTHO05D007850 5.7e-217 758.1 668 56.1
Lj1A1225T76 Lonicera japonica HOM05D006350 ORTHO05D007850 6.3e-216 754.6 655 59.4
Zm00001eb323120 Zea mays HOM05D006350 ORTHO05D007850 3.1e-215 752.3 659 56.3
Hund23514 Selenicereus undatus HOM05D006350 ORTHO05D007850 6.1e-211 738.0 650 59.7
MELO3C007370.2 Cucumis melo HOM05D006350 ORTHO05D007850 2.0e-209 733.0 573 64.0
Psat3g152760 Pisum sativum HOM05D006350 ORTHO05D007850 4.4e-209 731.9 528 68.9
Haze_08403 Corylus avellana HOM05D006350 ORTHO05D007850 1.4e-199 700.3 518 67.2
Cc02_g11700 Coffea canephora HOM05D006350 ORTHO05D007850 1.6e-198 696.8 426 77.2
CDE05G1739 Ceratophyllum demersum HOM05D006350 ORTHO05D007850 1.2e-195 687.2 600 58.3
SEGI_36047 Sequoiadendron giganteum HOM05D006350 ORTHO05D007850 2.7e-190 669.5 492 64.0
ATR0109G008 Amborella trichopoda HOM05D006350 ORTHO05D007850 1.0e-186 657.5 570 57.5
PGSC0003DMG400024073 Solanum tuberosum HOM05D006350 ORTHO05D007850 4.0e-186 655.6 502 64.3
AUR62022012 Chenopodium quinoa HOM05D006350 ORTHO05D007850 6.3e-184 648.3 675 50.8
unitig_748.g7139 Utricularia gibba HOM05D006350 ORTHO05D007850 1.6e-179 633.6 508 60.6
Cpa.g.sc198.9 Carica papaya HOM05D006350 ORTHO05D007850 7.0e-175 618.2 657 53.6
Mapoly0129s0047 Marchantia polymorpha HOM05D006350 ORTHO05D007850 1.9e-167 593.6 692 47.0
SMO117G0269 Selaginella moellendorffii HOM05D006350 ORTHO05D007850 8.6e-165 584.7 463 60.7
Lsat_1_v5_gn_1_127601 Lactuca sativa HOM05D006350 ORTHO05D000125 2.5e-164 583.2 518 56.2
Pp3c10_12100 Physcomitrium patens HOM05D006350 ORTHO05D007850 2.0e-153 547.0 616 48.4
Hund21368 Selenicereus undatus HOM05D006350 ORTHO05D007850 3.8e-152 542.7 329 75.1
Dinv17832 Davidia involucrata HOM05D006350 ORTHO05D007850 8.6e-149 531.6 419 63.2
Oeu051224.2 Olea europaea HOM05D006350 ORTHO05D007850 1.3e-144 517.7 684 46.5
Nn1g03636 Nelumbo nucifera HOM05D006350 ORTHO05D007850 8.4e-120 435.3 649 41.9
Hund21371 Selenicereus undatus HOM05D006350 ORTHO05D007850 3.2e-119 433.3 289 69.6
Eucgr.L01729 Eucalyptus grandis HOM05D006350 ORTHO05D007850 4.2e-95 353.2 454 44.9
MBI04_g30799_MAGBIO Magnolia biondii HOM05D006350 ORTHO05D007850 8.8e-85 318.9 358 50.0
HPP92_017615 Vanilla planifolia HOM05D006350 ORTHO05D007850 4.8e-83 313.2 203 70.9
MCO12G349 Micromonas commoda HOM05D006350 ORTHO05D007850 4.1e-82 310.1 508 37.0
Dinv17831 Davidia involucrata HOM05D006350 ORTHO05D007850 6.5e-80 302.8 190 78.9
PRCOL_00001871 Prasinoderma coloniale HOM05D006350 ORTHO05D007850 1.5e-76 291.6 474 38.0
VMungo1383G3417 Vigna mungo HOM05D006350 ORTHO05D007850 3.7e-75 287.0 175 74.9
SMO172G0198 Selaginella moellendorffii HOM05D006350 ORTHO05D007850 2.8e-62 244.2 309 45.3
Cre01.g053200 Chlamydomonas reinhardtii HOM05D006350 ORTHO05D007850 1.3e-59 235.3 565 31.2
VMungo0251G1161 Vigna mungo HOM05D006350 ORTHO05D007850 1.4e-58 231.9 129 78.3
Cc02_g11710 Coffea canephora HOM05D006350 ORTHO05D007850 1.2e-41 175.6 241 47.3
HPP92_017616 Vanilla planifolia HOM05D006350 ORTHO05D007850 3.9e-32 144.1 269 36.8
SMO198G0039 Selaginella moellendorffii HOM05D006350 ORTHO05D007850 2.6e-28 131.3 148 45.9
CBR_g28581 Chara braunii HOM05D000019 ORTHO05D000048 9.9e-28 129.4 132 50.8
unitig_748.g7138 Utricularia gibba HOM05D006350 ORTHO05D007850 1.1e-23 115.9 115 51.3
Sc05g0008890 Simmondsia chinensis HOM05D006350 ORTHO05D007850 6.2e-22 110.2 130 50.8
Nn1g00065 Nelumbo nucifera HOM05D006350 ORTHO05D007850 2.4e-21 108.2 139 44.6
Cfa024753 Carpinus fangiana HOM05D006350 ORTHO05D007850 1.4e-18 99.0 593 21.9
HPP92_017614 Vanilla planifolia HOM05D006350 ORTHO05D007850 4.3e-15 87.4 82 51.2
BolC3t14124H Brassica oleracea HOM05D006350 ORTHO05D007850 8.1e-14 83.2 72 58.3
C03p17100 Brassica napus HOM05D006350 ORTHO05D007850 2.4e-13 81.6 72 56.9
Nn1g07028 Nelumbo nucifera HOM05D006350 ORTHO05D007850 1.7e-11 75.5 72 51.4
PSO017G2510 Papaver somniferum HOM05D007034 ORTHO05D008665 5.5e-10 70.5 205 27.3
MBI11_g45190_MAGBIO Magnolia biondii HOM05D007034 ORTHO05D008665 9.3e-10 69.7 247 26.3
Sp6g35470 Schrenkiella parvula HOM05D007034 ORTHO05D008665 2.7e-09 68.2 248 25.8
ATR0582G190 Amborella trichopoda HOM05D007034 ORTHO05D008665 6.0e-09 67.0 177 26.6
PSO017G4759 Papaver somniferum HOM05D007034 ORTHO05D008665 1.0e-08 66.2 203 26.1
THA.LOC104818293 Tarenaya hassleriana HOM05D007034 ORTHO05D008665 1.0e-08 66.2 320 23.8
Lsat_1_v5_gn_5_9280 Lactuca sativa HOM05D007034 ORTHO05D008665 1.3e-08 65.9 200 27.0
EL10Ac7g17117 Beta vulgaris HOM05D007034 ORTHO05D008665 1.8e-08 65.5 321 22.1
AL6G17700 Arabidopsis lyrata HOM05D007034 ORTHO05D008665 2.3e-08 65.1 252 25.0
BraA02t04915Z Brassica rapa HOM05D007034 ORTHO05D008665 2.3e-08 65.1 318 23.6
Cfa024022 Carpinus fangiana HOM05D006350 ORTHO05D007850 2.3e-08 65.1 238 23.9
CBR_g36305 Chara braunii HOM05D007034 ORTHO05D008665 3.0e-08 64.7 298 23.2
Thhalv10012509m.g Eutrema salsugineum HOM05D007034 ORTHO05D008665 5.1e-08 63.9 252 23.8
Thecc.03G143600 Theobroma cacao HOM05D007034 ORTHO05D008665 5.1e-08 63.9 294 22.8
HPP92_006434 Vanilla planifolia HOM05D007034 ORTHO05D008665 6.7e-08 63.5 202 26.2
arahy.Tifrunner.gnm1.ann1.XWK03B Arachis hypogaea HOM05D007034 ORTHO05D008665 8.7e-08 63.2 196 24.0
Pp3c20_13830 Physcomitrium patens HOM05D006350 ORTHO05D007850 8.7e-08 63.2 106 42.5
arahy.Tifrunner.gnm1.ann1.FYEN8G Arachis hypogaea HOM05D007034 ORTHO05D008665 1.1e-07 62.8 196 24.0
Manes.06G128800 Manihot esculenta HOM05D007034 ORTHO05D008665 1.1e-07 62.8 124 29.0
AT5G07400 Arabidopsis thaliana HOM05D007034 ORTHO05D008665 2.5e-07 61.6 192 27.1
Prupe.5G138100 Prunus persica HOM05D007034 ORTHO05D008665 2.5e-07 61.6 198 24.7
Ah.15g089920 Amaranthus hybridus HOM05D007034 ORTHO05D008665 3.3e-07 61.2 273 24.2
AUR62029782 Chenopodium quinoa HOM05D007034 ORTHO05D008665 3.3e-07 61.2 201 26.4
BcaB05g21618 Brassica carinata HOM05D007034 ORTHO05D008665 4.3e-07 60.8 313 22.4
Glyma.08G005800 Glycine max HOM05D007034 ORTHO05D008665 4.3e-07 60.8 238 23.5
BcaC03g13189 Brassica carinata HOM05D007034 ORTHO05D008665 5.6e-07 60.5 252 24.6
BolC2t06271H Brassica oleracea HOM05D007034 ORTHO05D008665 5.6e-07 60.5 252 24.6
Cc04_g05570 Coffea canephora HOM05D007034 ORTHO05D008665 5.6e-07 60.5 192 26.0
TPR.G12786 Trifolium pratense HOM05D007034 ORTHO05D008665 7.4e-07 60.1 159 25.2
GSVIVG01014061001 Vitis vinifera HOM05D007034 ORTHO05D008665 7.4e-07 60.1 305 21.0
BcaB05g21619 Brassica carinata HOM05D007034 ORTHO05D008665 1.3e-06 59.3 193 22.8
Ca_16833_v3 Cicer arietinum L. HOM05D007034 ORTHO05D008665 1.3e-06 59.3 160 25.0
QL10p035731 Quercus lobata HOM05D007034 ORTHO05D008665 1.3e-06 59.3 192 25.5
Lj5C84G9 Lonicera japonica HOM05D007034 ORTHO05D008665 1.6e-06 58.9 199 23.6
Zm00001eb084530 Zea mays HOM05D007034 ORTHO05D008665 2.8e-06 58.2 193 25.9
AagrBONN_evm.TU.Sc2ySwM_340.151 Anthoceros agrestis HOM05D007034 ORTHO05D008665 3.7e-06 57.8 213 24.9
Carub.0006s0637 Capsella rubella HOM05D007034 ORTHO05D008665 4.8e-06 57.4 192 21.9
Medtr8g095490 Medicago truncatula HOM05D007034 ORTHO05D008665 6.2e-06 57.0 159 24.5
Os04g0403400 Oryza sativa ssp. japonica HOM05D007034 ORTHO05D008665 8.2e-06 56.6 191 25.1


User provided reference genes

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