Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.003G211000 Populus trichocarpa HOM05D004763 ORTHO05D007492 0.0e+00 1318.5 674 100.0
Sabra03G0153800 Salix brachista HOM05D004763 ORTHO05D007492 0.0e+00 1218.8 648 95.7
Sabra03G0156000 Salix brachista HOM05D004763 ORTHO05D007492 0.0e+00 1218.8 648 95.7
Manes.14G014500 Manihot esculenta HOM05D004763 ORTHO05D007492 0.0e+00 1182.9 669 89.5
MELO3C014639.2 Cucumis melo HOM05D004763 ORTHO05D007492 0.0e+00 1179.5 674 87.4
QL01p006243 Quercus lobata HOM05D004763 ORTHO05D007492 0.0e+00 1174.5 673 88.1
Thecc.09G223100 Theobroma cacao HOM05D004763 ORTHO05D007492 0.0e+00 1173.3 665 88.7
CsaV3_4G023800 Cucumis sativus L. HOM05D004763 ORTHO05D007492 0.0e+00 1172.9 674 87.1
Gohir.A13G215400 Gossypium hirsutum HOM05D004763 ORTHO05D007492 0.0e+00 1168.3 665 88.0
Gohir.D13G219100 Gossypium hirsutum HOM05D004763 ORTHO05D007492 0.0e+00 1167.5 665 87.8
Gorai.013G250000 Gossypium raimondii HOM05D004763 ORTHO05D007492 0.0e+00 1167.5 665 88.0
CiPaw.14G125100 Carya illinoinensis HOM05D004763 ORTHO05D007492 0.0e+00 1166.4 671 87.2
TWI34G0672 Tripterygium wilfordii HOM05D004763 ORTHO05D007492 0.0e+00 1163.7 672 86.9
TAR623G1126 Trochodendron aralioides HOM05D004763 ORTHO05D007492 0.0e+00 1155.6 671 85.8
Dinv36304 Davidia involucrata HOM05D004763 ORTHO05D007492 0.0e+00 1155.2 671 86.3
Sed0013957 Sechium edule HOM05D004763 ORTHO05D007492 0.0e+00 1154.0 671 85.7
Hund22081 Selenicereus undatus HOM05D004763 ORTHO05D007492 0.0e+00 1150.6 671 85.7
GSVIVG01025336001 Vitis vinifera HOM05D004763 ORTHO05D007492 0.0e+00 1147.5 671 85.7
Sc09g0000480 Simmondsia chinensis HOM05D004763 ORTHO05D007492 0.0e+00 1147.1 672 85.0
Glyma.13G342900 Glycine max HOM05D004763 ORTHO05D007492 0.0e+00 1145.2 671 86.0
Haze_23044 Corylus avellana HOM05D004763 ORTHO05D007492 0.0e+00 1140.9 671 86.0
THA.LOC104816912 Tarenaya hassleriana HOM05D004763 ORTHO05D007492 0.0e+00 1140.2 665 85.0
Cc01_g04070 Coffea canephora HOM05D004763 ORTHO05D007492 0.0e+00 1135.9 671 83.9
Medtr2g098510 Medicago truncatula HOM05D004763 ORTHO05D007492 0.0e+00 1135.6 666 86.0
arahy.Tifrunner.gnm1.ann1.P0K6XU Arachis hypogaea HOM05D004763 ORTHO05D007492 0.0e+00 1134.8 668 85.9
CSS0044360 Camellia sinensis var. sinensis HOM05D004763 ORTHO05D007492 0.0e+00 1134.0 665 85.3
Hma1.2p1_1169F.1_g263300 Hydrangea macrophylla HOM05D004763 ORTHO05D007492 0.0e+00 1131.7 671 84.4
arahy.Tifrunner.gnm1.ann1.VYK1P0 Arachis hypogaea HOM05D004763 ORTHO05D007492 0.0e+00 1131.3 668 85.5
Phvul.005G150500 Phaseolus vulgaris HOM05D004763 ORTHO05D007492 0.0e+00 1131.3 668 85.9
Psat5g288480 Pisum sativum HOM05D004763 ORTHO05D007492 0.0e+00 1129.8 669 84.5
arahy.Tifrunner.gnm1.ann1.GN3GFY Arachis hypogaea HOM05D004763 ORTHO05D007492 0.0e+00 1129.4 668 85.3
Eucgr.B03662 Eucalyptus grandis HOM05D004763 ORTHO05D007492 0.0e+00 1129.0 673 84.1
Nn7g36058 Nelumbo nucifera HOM05D004763 ORTHO05D007492 0.0e+00 1129.0 672 83.6
Cpa.g.sc84.111 Carica papaya HOM05D004763 ORTHO05D007492 0.0e+00 1125.9 698 82.2
COL.COLO4_09893 Corchorus olitorius HOM05D004763 ORTHO05D007492 0.0e+00 1125.9 662 85.2
Lj3g0020649 Lotus japonicus HOM05D004763 ORTHO05D007492 0.0e+00 1124.4 669 84.6
CANSAT54G1729 Cannabis sativa HOM05D004763 ORTHO05D007492 0.0e+00 1120.1 674 84.7
Ciclev10014511m.g Citrus clementina HOM05D004763 ORTHO05D007492 0.0e+00 1117.4 664 84.8
Lalb_Chr14g0372291 Lupinus albus HOM05D004763 ORTHO05D007492 0.0e+00 1116.7 673 83.7
TPR.G18851 Trifolium pratense HOM05D004763 ORTHO05D007492 0.0e+00 1110.9 660 84.7
Prupe.6G018600 Prunus persica HOM05D004763 ORTHO05D007492 0.0e+00 1110.5 693 81.7
PGR102G0325 Punica granatum HOM05D004763 ORTHO05D007492 0.0e+00 1110.5 672 83.9
AUR62019250 Chenopodium quinoa HOM05D004763 ORTHO05D007492 0.0e+00 1109.7 671 83.2
Aqoxy1G00185 Aquilegia oxysepala HOM05D004763 ORTHO05D007492 0.0e+00 1108.6 671 82.9
AL3G34700 Arabidopsis lyrata HOM05D004763 ORTHO05D007492 0.0e+00 1107.8 662 83.2
arahy.Tifrunner.gnm1.ann1.X75IXN Arachis hypogaea HOM05D004763 ORTHO05D007492 0.0e+00 1106.3 706 80.3
HanXRQChr14g0451781 Helianthus annuus HOM05D004763 ORTHO05D007492 0.0e+00 1105.9 674 82.3
VMungo1080G1755 Vigna mungo HOM05D004763 ORTHO05D007492 0.0e+00 1105.5 644 86.2
Duzib150G1218 Durio zibethinus HOM05D004763 ORTHO05D007492 0.0e+00 1105.1 688 82.7
EL10Ac4g10318 Beta vulgaris HOM05D004763 ORTHO05D007492 0.0e+00 1104.4 658 83.7
BcaC05g28282 Brassica carinata HOM05D004763 ORTHO05D007492 0.0e+00 1102.0 666 82.3
Sopen01g009200 Solanum pennellii HOM05D004763 ORTHO05D007492 0.0e+00 1102.0 671 81.5
Solyc01g014490.4 Solanum lycopersicum HOM05D004763 ORTHO05D007492 0.0e+00 1101.7 670 81.6
C05p43300 Brassica napus HOM05D004763 ORTHO05D007492 0.0e+00 1101.3 666 82.1
AT3G20780 Arabidopsis thaliana HOM05D004763 ORTHO05D007492 0.0e+00 1100.9 662 82.9
PSO339G3791 Papaver somniferum HOM05D004763 ORTHO05D007492 0.0e+00 1100.5 672 82.6
Peaxi162Scf00773g00119 Petunia axillaris HOM05D004763 ORTHO05D007492 0.0e+00 1099.3 679 81.4
BcaB06g26148 Brassica carinata HOM05D004763 ORTHO05D007492 0.0e+00 1098.2 666 82.4
RcHm_v2.0_Chr5g0078101 Rosa chinensis HOM05D004763 ORTHO05D007492 0.0e+00 1095.1 664 82.8
Migut.D00558 Erythranthe guttata HOM05D004763 ORTHO05D007492 0.0e+00 1094.7 673 80.5
Carub.0003s2074 Capsella rubella HOM05D004763 ORTHO05D007492 0.0e+00 1094.0 662 82.3
A05p28000 Brassica napus HOM05D004763 ORTHO05D007492 0.0e+00 1091.6 680 80.9
Sp3g18800 Schrenkiella parvula HOM05D004763 ORTHO05D007492 0.0e+00 1090.9 666 81.7
ECA238G4453 Erigeron canadensis HOM05D004763 ORTHO05D007492 0.0e+00 1090.5 668 82.0
MD03G1021100 Malus domestica HOM05D004763 ORTHO05D007492 0.0e+00 1090.5 677 82.1
Thhalv10020214m.g Eutrema salsugineum HOM05D004763 ORTHO05D007492 0.0e+00 1088.9 662 82.2
FvH4_3g43550 Fragaria vesca HOM05D004763 ORTHO05D007492 0.0e+00 1085.1 664 82.1
Nitab4.5_0006575g0020 Nicotiana tabacum HOM05D004763 ORTHO05D007492 0.0e+00 1083.2 688 80.5
BraA05t21683Z Brassica rapa HOM05D004763 ORTHO05D007492 0.0e+00 1080.1 688 79.7
FAN16G3272 Fragaria x ananassa HOM05D004763 ORTHO05D007492 4.6e-312 1074.7 674 80.7
BolC5t33062H Brassica oleracea HOM05D004763 ORTHO05D007492 4.6e-312 1073.5 697 78.2
Nitab4.5_0003069g0050 Nicotiana tabacum HOM05D004763 ORTHO05D007492 4.1e-311 1070.8 675 81.2
HPP92_020536 Vanilla planifolia HOM05D004763 ORTHO05D007492 3.6e-307 1057.7 665 78.9
ATR0605G091 Amborella trichopoda HOM05D004763 ORTHO05D007492 1.5e-305 1052.4 671 78.7
SGA_v2.0_scaffold1G00797 Striga asiatica HOM05D004763 ORTHO05D007492 4.4e-305 1050.8 727 74.6
Rhsim01G0189300 Rhododendron simsii HOM05D004763 ORTHO05D007492 5.4e-303 1043.9 755 73.0
Os09g0279600 Oryza sativa ssp. japonica HOM05D004763 ORTHO05D007492 1.6e-299 1032.3 648 77.6
CDE04G0998 Ceratophyllum demersum HOM05D004763 ORTHO05D007492 7.5e-297 1023.5 640 79.7
Aa31LG8G7590 Aethionema arabicum HOM05D004763 ORTHO05D007492 7.8e-294 1013.4 644 79.5
Lsat_1_v5_gn_2_101121 Lactuca sativa HOM05D004763 ORTHO05D007492 1.0e-293 1013.1 695 75.8
Actinidia39377 Actinidia chinensis HOM05D004763 ORTHO05D007492 2.3e-290 1001.9 672 77.1
Ah.04g161760 Amaranthus hybridus HOM05D004763 ORTHO05D007492 5.2e-282 974.2 671 75.4
Atru.chr3.2503 Acer truncatum HOM05D004763 ORTHO05D007492 7.6e-281 970.3 580 83.3
Ca_01270_v3 Cicer arietinum L. HOM05D004763 ORTHO05D007492 5.1e-277 957.6 594 81.6
CARHR096610 Cardamine hirsuta HOM05D004763 ORTHO05D007492 4.3e-276 954.5 591 80.5
DCAR_024396 Daucus carota HOM05D004763 ORTHO05D007492 1.2e-273 946.4 671 73.6
Pp3c22_12720 Physcomitrium patens HOM05D004763 ORTHO05D007492 3.4e-273 944.9 665 71.1
AagrBONN_evm.TU.Sc2ySwM_344.3405 Anthoceros agrestis HOM05D004763 ORTHO05D007492 5.8e-273 944.1 626 73.0
Lj4g0010878 Lotus japonicus HOM05D004763 ORTHO05D007492 4.2e-271 937.9 669 74.3
SMO116G0144 Selaginella moellendorffii HOM05D004763 ORTHO05D007492 1.3e-264 916.4 650 70.5
Aqoxy381s001 Aquilegia oxysepala HOM05D004763 ORTHO05D007492 2.9e-264 915.2 654 73.7
Mapoly0042s0060 Marchantia polymorpha HOM05D004763 ORTHO05D007492 2.7e-262 908.7 659 69.0
CBR_g31022 Chara braunii HOM05D004763 ORTHO05D007492 6.0e-262 907.5 674 67.2
FAN21G2003 Fragaria x ananassa HOM05D004763 ORTHO05D007492 6.9e-258 894.0 635 73.5
Potri.T085401 Populus trichocarpa HOM05D004763 ORTHO05D007492 4.9e-256 887.9 443 100.0
Hma1.2p1_1169F.1_g263310 Hydrangea macrophylla HOM05D004763 ORTHO05D007492 5.5e-255 884.4 509 85.1
FAN11G2145 Fragaria x ananassa HOM05D004763 ORTHO05D007492 4.2e-247 858.2 701 66.0
FAN11G0713 Fragaria x ananassa HOM05D004763 ORTHO05D007492 9.7e-244 847.0 701 65.3
Zm00001eb308780 Zea mays HOM05D004763 ORTHO05D007492 3.5e-209 732.3 464 75.6
Cre01.g019750 Chlamydomonas reinhardtii HOM05D004763 ORTHO05D007492 1.7e-200 703.4 665 55.5
ClCG02G023620 Citrullus lanatus HOM05D004763 ORTHO05D007492 1.3e-184 650.6 374 88.5
Lsat_1_v5_gn_1_127001 Lactuca sativa HOM05D004763 ORTHO05D007492 1.5e-180 637.1 549 62.3
SEGI_32015 Sequoiadendron giganteum HOM05D004763 ORTHO05D007492 7.5e-180 634.8 382 80.9
MCO09G243 Micromonas commoda HOM05D004763 ORTHO05D007492 1.3e-179 634.0 666 52.1
MBI01_g15753_MAGBIO Magnolia biondii HOM05D004763 ORTHO05D007492 2.4e-178 629.8 365 87.1
PRCOL_00005940 Prasinoderma coloniale HOM05D004763 ORTHO05D007492 4.7e-174 615.5 651 51.8
CAN.G646.1 Capsicum annuum HOM05D004763 ORTHO05D007492 2.0e-172 610.1 366 83.9
PGSC0003DMG401029907 Solanum tuberosum HOM05D004763 ORTHO05D007492 1.6e-169 600.5 387 79.6
Lju1319A4T15 Lonicera japonica HOM05D004763 ORTHO05D007492 7.9e-145 518.5 303 84.2
Lj1A366T12 Lonicera japonica HOM05D004763 ORTHO05D007492 2.1e-142 510.4 367 73.3
Lsat_1_v5_gn_1_127121 Lactuca sativa HOM05D004763 ORTHO05D007492 2.0e-140 503.8 644 48.9
CAN.G442.1 Capsicum annuum HOM05D004763 ORTHO05D007492 2.9e-139 500.0 305 80.3
PGSC0003DMG402029907 Solanum tuberosum HOM05D004763 ORTHO05D007492 2.1e-137 493.8 304 79.9
Lj1C366G5 Lonicera japonica HOM05D004763 ORTHO05D007492 5.9e-116 422.5 295 73.6
Lsat_1_v5_gn_1_126981 Lactuca sativa HOM05D004763 ORTHO05D007492 2.4e-109 400.6 474 50.2
Actinidia06319 Actinidia chinensis HOM05D004763 ORTHO05D007492 8.0e-81 305.8 213 71.8
SEGI_39045 Sequoiadendron giganteum HOM05D004763 ORTHO05D007492 4.1e-77 293.5 214 66.8
Eucgr.B03660 Eucalyptus grandis HOM05D004763 ORTHO05D007492 3.9e-67 260.4 174 74.7
Lju1319C4G3 Lonicera japonica HOM05D004763 ORTHO05D014896 3.1e-56 224.2 234 56.8
TPR.G29742 Trifolium pratense HOM05D004763 ORTHO05D007492 3.8e-54 217.2 247 52.2
TPR.G29743 Trifolium pratense HOM05D004763 ORTHO05D007492 2.7e-52 211.1 218 55.5
Oeu036968.1 Olea europaea HOM05D004763 ORTHO05D007492 1.3e-49 202.2 104 88.5
Lsat_1_v5_gn_1_126941 Lactuca sativa HOM05D004763 ORTHO05D007492 1.6e-49 201.8 221 49.3
Lsat_1_v5_gn_1_127201 Lactuca sativa HOM05D004763 ORTHO05D007492 2.6e-39 167.9 415 33.0
Lsat_1_v5_gn_1_127161 Lactuca sativa HOM05D004763 ORTHO05D007492 1.2e-36 159.1 173 52.0
MBI09_g40619_MAGBIO Magnolia biondii HOM05D004763 ORTHO05D019264 3.5e-36 157.5 87 88.5
MBI04_g09599_MAGBIO Magnolia biondii HOM05D000103 ORTHO05D019264 4.6e-36 157.1 87 88.5
MBI02_g24793_MAGBIO Magnolia biondii HOM05D000103 ORTHO05D019264 3.9e-35 154.1 87 87.4
Aa31LG8G7550 Aethionema arabicum HOM05D004763 ORTHO05D007492 1.1e-34 152.5 466 33.7
Ca_01269_v3 Cicer arietinum L. HOM05D000073 ORTHO05D000033 3.7e-33 147.5 106 77.4
Thecc.03G073800 Theobroma cacao HOM05D004763 ORTHO05D019264 6.9e-32 143.3 107 69.2
PGSC0003DMG400012096 Solanum tuberosum HOM05D004763 ORTHO05D014896 2.3e-27 128.3 86 75.6
PGSC0003DMG401017076 Solanum tuberosum HOM05D004763 ORTHO05D026177 4.1e-24 117.5 113 54.0
arahy.Tifrunner.gnm1.ann1.50I1V9 Arachis hypogaea HOM05D004763 ORTHO05D014896 2.5e-21 108.2 68 83.8
arahy.Tifrunner.gnm1.ann1.F7UR4V Arachis hypogaea HOM05D004763 ORTHO05D014896 5.5e-21 107.1 68 82.4
arahy.Tifrunner.gnm1.ann1.G1IAFF Arachis hypogaea HOM05D004763 ORTHO05D014896 9.3e-21 106.3 82 70.7
Lsat_1_v5_gn_3_118680 Lactuca sativa HOM05D004763 ORTHO05D007492 8.7e-19 99.8 55 87.3
Lju1319A4T14 Lonicera japonica HOM05D004763 ORTHO05D019264 1.1e-18 99.4 54 88.9
PGSC0003DMG400026817 Solanum tuberosum HOM05D004763 ORTHO05D026177 3.7e-17 94.4 82 65.9
Sopen04g015550 Solanum pennellii HOM05D000004 ORTHO05D000002 3.1e-16 91.3 97 56.7
arahy.Tifrunner.gnm1.ann1.65KXHR Arachis hypogaea HOM05D004763 ORTHO05D014896 2.0e-15 88.6 49 91.8
TWI60G1170 Tripterygium wilfordii HOM05D004763 ORTHO05D014896 7.7e-15 86.7 49 89.8
Lsat_1_v5_gn_1_125620 Lactuca sativa HOM05D004763 ORTHO05D007492 1.3e-14 85.9 197 34.5
arahy.Tifrunner.gnm1.ann1.YT3XVJ Arachis hypogaea HOM05D012186 ORTHO05D009594 5.0e-14 84.0 98 55.1
Solyc11g028310.3 Solanum lycopersicum HOM05D004763 ORTHO05D026177 1.4e-11 75.9 63 66.7
Lsat_1_v5_gn_1_126960 Lactuca sativa HOM05D004763 ORTHO05D012314 1.1e-10 72.8 68 51.5
Aa31LG8G7540 Aethionema arabicum HOM05D004763 ORTHO05D007492 4.3e-10 70.9 63 58.7
PGSC0003DMG400019106 Solanum tuberosum HOM05D004763 ORTHO05D007492 9.7e-10 69.7 37 86.5
Solyc12g036030.1 Solanum lycopersicum HOM05D004763 ORTHO05D026177 5.3e-08 63.9 105 41.0
Solyc11g028340.3 Solanum lycopersicum HOM05D004763 ORTHO05D019264 1.2e-07 62.8 43 65.1
Lsat_1_v5_gn_8_146221 Lactuca sativa HOM05D004763 ORTHO05D014896 3.8e-06 57.8 33 84.8
arahy.Tifrunner.gnm1.ann1.NZV0HQ Arachis hypogaea HOM05D004763 ORTHO05D014896 5.0e-06 57.4 33 90.9
TPR.G18832 Trifolium pratense HOM05D006024 ORTHO05D007505 5.0e-06 57.4 42 61.9
RcHm_v2.0_Chr3g0472751 Rosa chinensis HOM05D004763 ORTHO05D344474 8.5e-06 56.6 38 78.9


User provided reference genes

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