Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.003G124700 Populus trichocarpa HOM05D004635 ORTHO05D005899 0.0e+00 1250.3 630 100.0
Sabra03G0088200 Salix brachista HOM05D004635 ORTHO05D005899 0.0e+00 1161.7 630 92.7
Duzib084G1397 Durio zibethinus HOM05D004635 ORTHO05D005899 1.6e-248 862.8 636 70.1
Thecc.03G276500 Theobroma cacao HOM05D004635 ORTHO05D005899 1.9e-246 855.9 629 69.2
Manes.01G063000 Manihot esculenta HOM05D004635 ORTHO05D005899 1.1e-244 850.1 633 68.6
COL.COLO4_34438 Corchorus olitorius HOM05D004635 ORTHO05D005899 1.4e-244 849.7 636 68.9
Atru.chr9.2220 Acer truncatum HOM05D004635 ORTHO05D005899 5.9e-243 844.3 632 70.4
Gohir.A09G192700 Gossypium hirsutum HOM05D004635 ORTHO05D005899 1.7e-242 842.8 639 69.2
Gohir.D09G186900 Gossypium hirsutum HOM05D004635 ORTHO05D005899 7.2e-241 837.4 639 68.7
Gorai.006G209700 Gossypium raimondii HOM05D004635 ORTHO05D005899 1.2e-240 836.6 639 67.8
Ciclev10019281m.g Citrus clementina HOM05D004635 ORTHO05D005899 3.8e-234 815.1 634 67.4
TWI81G1014 Tripterygium wilfordii HOM05D004635 ORTHO05D005899 5.7e-230 801.2 630 67.5
Dinv38955 Davidia involucrata HOM05D004635 ORTHO05D005899 1.7e-229 799.7 632 66.9
CsaV3_5G002950 Cucumis sativus L. HOM05D004635 ORTHO05D005899 9.1e-228 793.9 636 65.7
MELO3C005661.2 Cucumis melo HOM05D004635 ORTHO05D005899 1.5e-227 793.1 636 66.5
Cpa.g.sc202.13 Carica papaya HOM05D004635 ORTHO05D005899 7.7e-227 790.8 636 66.2
PGR042G2640 Punica granatum HOM05D004635 ORTHO05D005899 1.3e-226 790.0 636 64.6
Actinidia02016 Actinidia chinensis HOM05D004635 ORTHO05D005899 1.7e-226 789.6 633 65.6
Eucgr.E00572 Eucalyptus grandis HOM05D004635 ORTHO05D005899 3.2e-225 785.4 627 65.2
Prupe.5G097400 Prunus persica HOM05D004635 ORTHO05D005899 3.6e-224 781.9 624 66.0
TAR636G1354 Trochodendron aralioides HOM05D004635 ORTHO05D005899 1.0e-223 780.4 635 65.7
RcHm_v2.0_Chr7g0211871 Rosa chinensis HOM05D004635 ORTHO05D005899 1.7e-218 763.1 642 63.7
VMungo0251G2718 Vigna mungo HOM05D004635 ORTHO05D005899 2.9e-218 762.3 640 62.3
vmacro11312 Vaccinium macrocarpon HOM05D004635 ORTHO05D005899 5.0e-218 761.5 616 65.7
ClCG01G002860 Citrullus lanatus HOM05D004635 ORTHO05D005899 2.5e-217 759.2 635 63.9
Lj6A677T80 Lonicera japonica HOM05D004635 ORTHO05D005899 5.5e-217 758.1 648 62.5
Hma1.2p1_0377F.1_g139240 Hydrangea macrophylla HOM05D004635 ORTHO05D005899 9.4e-217 757.3 625 65.4
TAR629G3080 Trochodendron aralioides HOM05D004635 ORTHO05D005899 1.2e-216 756.9 615 66.2
Phvul.002G288000 Phaseolus vulgaris HOM05D004635 ORTHO05D005899 2.7e-216 755.7 638 61.6
CSS0019840 Camellia sinensis var. sinensis HOM05D004635 ORTHO05D005899 5.7e-214 748.0 627 63.3
Haze_08871 Corylus avellana HOM05D004635 ORTHO05D005899 5.7e-214 748.0 634 63.9
Cfa012156 Carpinus fangiana HOM05D004635 ORTHO05D005899 9.8e-214 747.3 630 63.0
MD14G1101800 Malus domestica HOM05D004635 ORTHO05D005899 1.7e-213 746.5 633 64.3
QL01p003129 Quercus lobata HOM05D004635 ORTHO05D005899 2.8e-213 745.7 637 63.6
arahy.Tifrunner.gnm1.ann1.NB74KP Arachis hypogaea HOM05D004635 ORTHO05D005899 6.3e-213 744.6 634 61.4
Nn1g02763 Nelumbo nucifera HOM05D004635 ORTHO05D005899 2.4e-212 742.7 638 63.0
TPR.G12861 Trifolium pratense HOM05D004635 ORTHO05D005899 2.4e-212 742.7 630 61.4
FAN13G3179 Fragaria x ananassa HOM05D004635 ORTHO05D005899 2.0e-211 739.6 632 63.3
Aqoxy5G04278 Aquilegia oxysepala HOM05D004635 ORTHO05D005899 1.0e-210 737.3 632 63.6
Nn5g27546 Nelumbo nucifera HOM05D004635 ORTHO05D005899 1.7e-210 736.5 629 63.0
arahy.Tifrunner.gnm1.ann1.Y4HLQF Arachis hypogaea HOM05D004635 ORTHO05D005899 2.2e-210 736.1 624 61.7
FAN18G0535 Fragaria x ananassa HOM05D004635 ORTHO05D005899 2.9e-210 735.7 632 63.1
FAN18G1690 Fragaria x ananassa HOM05D004635 ORTHO05D005899 5.0e-210 734.9 632 63.1
FAN04G0694 Fragaria x ananassa HOM05D004635 ORTHO05D005899 6.5e-210 734.6 633 62.7
THA.LOC104818064 Tarenaya hassleriana HOM05D004635 ORTHO05D005899 8.5e-210 734.2 636 62.3
Medtr8g098490 Medicago truncatula HOM05D004635 ORTHO05D005899 1.1e-209 733.8 624 61.7
Glyma.08G013300 Glycine max HOM05D004635 ORTHO05D005899 4.2e-209 731.9 642 60.3
Ca_17544_v3 Cicer arietinum L. HOM05D004635 ORTHO05D005899 7.2e-209 731.1 622 60.8
FvH4_5g23090 Fragaria vesca HOM05D004635 ORTHO05D005899 7.2e-209 731.1 632 62.8
Lj4g0017456 Lotus japonicus HOM05D004635 ORTHO05D005899 9.4e-209 730.7 628 60.8
DCAR_000603 Daucus carota HOM05D004635 ORTHO05D005899 1.2e-208 730.3 623 62.6
Nitab4.5_0003907g0020 Nicotiana tabacum HOM05D004635 ORTHO05D005899 4.0e-207 725.3 597 62.6
SGA_v2.0_scaffold146G36254 Striga asiatica HOM05D004635 ORTHO05D005899 1.2e-206 723.8 643 60.2
Peaxi162Scf00102g01512 Petunia axillaris HOM05D004635 ORTHO05D005899 7.5e-206 721.1 626 61.0
CAN.G792.84 Capsicum annuum HOM05D004635 ORTHO05D005899 9.8e-206 720.7 598 62.2
Lalb_Chr05g0224871 Lupinus albus HOM05D004635 ORTHO05D005899 9.8e-206 720.7 631 60.9
arahy.Tifrunner.gnm1.ann1.BGY2GF Arachis hypogaea HOM05D004635 ORTHO05D005899 1.3e-205 720.3 629 60.6
PGSC0003DMG400029793 Solanum tuberosum HOM05D004635 ORTHO05D005899 1.4e-204 716.8 598 61.5
arahy.Tifrunner.gnm1.ann1.MF5MQE Arachis hypogaea HOM05D004635 ORTHO05D005899 1.8e-204 716.5 625 60.2
Psat7g034520 Pisum sativum HOM05D004635 ORTHO05D005899 5.4e-204 714.9 600 61.7
Nitab4.5_0004836g0050 Nicotiana tabacum HOM05D004635 ORTHO05D005899 2.7e-203 712.6 595 61.2
ECA240G4094 Erigeron canadensis HOM05D004635 ORTHO05D005899 3.5e-203 712.2 639 59.8
Aa31LG9G660 Aethionema arabicum HOM05D004635 ORTHO05D005899 5.9e-203 711.4 621 62.6
MBI18_g19087_MAGBIO Magnolia biondii HOM05D004635 ORTHO05D005899 5.9e-203 711.4 641 61.2
GSVIVG01019776001 Vitis vinifera HOM05D004635 ORTHO05D005899 7.7e-203 711.1 625 61.4
CANSAT78G0227 Cannabis sativa HOM05D004635 ORTHO05D005899 1.7e-202 709.9 622 62.1
PSO384G0809 Papaver somniferum HOM05D004635 ORTHO05D005899 2.3e-202 709.5 645 60.3
Carub.0007s3429 Capsella rubella HOM05D004635 ORTHO05D005899 3.8e-202 708.8 628 61.1
PSO017G3139 Papaver somniferum HOM05D004635 ORTHO05D005899 6.6e-202 708.0 644 60.1
Solyc08g007990.3 Solanum lycopersicum HOM05D004635 ORTHO05D005899 6.6e-202 708.0 598 61.5
PSO170G0760 Papaver somniferum HOM05D004635 ORTHO05D005899 1.9e-201 706.4 644 59.6
AT5G41190 Arabidopsis thaliana HOM05D004635 ORTHO05D005899 4.2e-201 705.3 628 60.8
PSO339G4625 Papaver somniferum HOM05D004635 ORTHO05D005899 4.2e-201 705.3 640 59.5
AUR62017259 Chenopodium quinoa HOM05D004635 ORTHO05D005899 3.6e-200 702.2 645 58.8
Cc08_g14490 Coffea canephora HOM05D004635 ORTHO05D005899 3.6e-200 702.2 630 60.5
Sopen08g003860 Solanum pennellii HOM05D004635 ORTHO05D005899 4.7e-200 701.8 598 60.7
AL7G48240 Arabidopsis lyrata HOM05D004635 ORTHO05D005899 2.3e-199 699.5 630 60.5
PGSC0003DMG400005819 Solanum tuberosum HOM05D004635 ORTHO05D005899 2.0e-198 696.4 598 60.7
Sp7g00720 Schrenkiella parvula HOM05D004635 ORTHO05D005899 2.6e-198 696.0 625 59.7
SpUn0010_0200 Schrenkiella parvula HOM05D004635 ORTHO05D005899 2.6e-198 696.0 625 59.7
Sed0015372 Sechium edule HOM05D004635 ORTHO05D005899 7.5e-198 694.5 632 60.6
EL10Ac5g12781 Beta vulgaris HOM05D004635 ORTHO05D005899 3.2e-196 689.1 626 60.7
HanXRQChr13g0416481 Helianthus annuus HOM05D004635 ORTHO05D005899 3.2e-196 689.1 634 61.0
Hund11485 Selenicereus undatus HOM05D004635 ORTHO05D005899 3.2e-196 689.1 647 58.0
AUR62010616 Chenopodium quinoa HOM05D004635 ORTHO05D005899 3.5e-195 685.6 653 57.7
Thhalv10027696m.g Eutrema salsugineum HOM05D004635 ORTHO05D005899 1.0e-194 684.1 627 60.0
MSTRG.13840 Avicennia marina HOM05D004635 ORTHO05D005899 2.3e-194 682.9 637 58.4
EL10Ac1g00317 Beta vulgaris HOM05D004635 ORTHO05D005899 8.6e-194 681.0 640 59.5
Lsat_1_v5_gn_6_87181 Lactuca sativa HOM05D004635 ORTHO05D005899 5.2e-191 671.8 639 58.2
SalBow6G1328 Salvia bowleyana HOM05D004635 ORTHO05D005899 1.3e-189 667.2 637 55.9
Sed0018462 Sechium edule HOM05D004635 ORTHO05D005899 4.9e-189 665.2 520 67.7
FAN08G3353 Fragaria x ananassa HOM05D004635 ORTHO05D005899 2.4e-188 662.9 563 63.2
C04p48290 Brassica napus HOM05D004635 ORTHO05D005899 9.2e-188 661.0 628 56.8
BcaC02g08976 Brassica carinata HOM05D004635 ORTHO05D005899 2.0e-187 659.8 628 56.8
BolC4t26422H Brassica oleracea HOM05D004635 ORTHO05D005899 2.0e-187 659.8 628 56.8
BcaB06g27604 Brassica carinata HOM05D004635 ORTHO05D005899 2.7e-187 659.4 628 57.0
ATR0064G111 Amborella trichopoda HOM05D004635 ORTHO05D005899 2.8e-184 649.4 626 56.9
A04p14360 Brassica napus HOM05D004635 ORTHO05D005899 2.6e-182 642.9 629 55.6
BraA07t29762Z Brassica rapa HOM05D004635 ORTHO05D005899 4.4e-182 642.1 623 56.2
BraA04t17085Z Brassica rapa HOM05D004635 ORTHO05D005899 5.8e-182 641.7 629 55.5
A07p20710 Brassica napus HOM05D004635 ORTHO05D005899 1.7e-181 640.2 624 55.9
RcHm_v2.0_Chr7g0179141 Rosa chinensis HOM05D004635 ORTHO05D005899 4.1e-180 635.6 629 56.6
Glyma.05G206400 Glycine max HOM05D004635 ORTHO05D005899 3.6e-176 622.5 552 59.8
CARHR213190 Cardamine hirsuta HOM05D004635 ORTHO05D005899 8.1e-176 621.3 620 55.0
CiPaw.11G137400 Carya illinoinensis HOM05D004635 ORTHO05D005899 1.1e-172 610.9 549 61.6
BcaB02g07904 Brassica carinata HOM05D004635 ORTHO05D005899 7.3e-169 598.2 624 53.4
HPP92_020857 Vanilla planifolia HOM05D004635 ORTHO05D005899 7.3e-161 571.6 646 50.0
Os02g0114700 Oryza sativa ssp. japonica HOM05D004635 ORTHO05D005899 5.6e-153 545.4 591 51.8
Oeu011058.1 Olea europaea HOM05D004635 ORTHO05D005899 4.0e-151 539.3 636 50.0
unitig_37.g12250 Utricularia gibba HOM05D004635 ORTHO05D005899 1.9e-148 530.4 646 48.1
BcaC08g44516 Brassica carinata HOM05D004635 ORTHO05D005899 2.4e-148 530.0 625 49.1
SEGI_23350 Sequoiadendron giganteum HOM05D004635 ORTHO05D005899 7.1e-148 528.5 665 45.4
CDE06G0591 Ceratophyllum demersum HOM05D004635 ORTHO05D005899 1.8e-146 523.9 530 54.7
Thhalv10009994m.g Eutrema salsugineum HOM05D004635 ORTHO05D005899 1.5e-145 520.8 629 48.8
Actinidia14552 Actinidia chinensis HOM05D004635 ORTHO05D005899 9.6e-145 518.1 641 51.0
Zm00001eb209610 Zea mays HOM05D004635 ORTHO05D005899 2.1e-144 516.9 591 49.6
Sc01g0009470 Simmondsia chinensis HOM05D004635 ORTHO05D005899 1.8e-135 487.3 491 56.6
Zm00001eb229850 Zea mays HOM05D004635 ORTHO05D005899 7.2e-124 448.7 524 50.8
RcHm_v2.0_Chr7g0211921 Rosa chinensis HOM05D004635 ORTHO05D005899 1.8e-119 434.1 399 61.4
Carub.0004s0410 Capsella rubella HOM05D004635 ORTHO05D005899 3.8e-117 426.4 530 47.7
RcHm_v2.0_Chr2g0099081 Rosa chinensis HOM05D004635 ORTHO05D005899 1.4e-111 407.9 550 47.3
Migut.A00784 Erythranthe guttata HOM05D004635 ORTHO05D005899 2.9e-109 400.2 444 54.1
Pp3c2_34320 Physcomitrium patens HOM05D004635 ORTHO05D005899 4.2e-108 396.4 658 38.3
C06p19650 Brassica napus HOM05D004635 ORTHO05D005899 1.0e-106 391.7 442 49.3
AagrBONN_evm.TU.Sc2ySwM_362.355 Anthoceros agrestis HOM05D004635 ORTHO05D005899 3.7e-104 383.3 661 39.2
Dinv37658 Davidia involucrata HOM05D004635 ORTHO05D005899 2.0e-102 377.5 340 62.4
FAN26G1714 Fragaria x ananassa HOM05D004635 ORTHO05D005899 3.8e-93 346.7 370 54.9
FAN28G2416 Fragaria x ananassa HOM05D004635 ORTHO05D005899 3.8e-93 346.7 370 54.9
CDE05G1698 Ceratophyllum demersum HOM05D004635 ORTHO05D005899 1.2e-89 335.1 457 44.4
Dinv37657 Davidia involucrata HOM05D004635 ORTHO05D005899 6.3e-88 329.3 256 66.4
BolC6t37157H Brassica oleracea HOM05D004635 ORTHO05D005899 7.0e-87 325.9 282 58.9
SMO171G0086 Selaginella moellendorffii HOM05D004635 ORTHO05D005899 1.9e-84 317.8 619 35.4
BolC6t37158H Brassica oleracea HOM05D004635 ORTHO05D005899 8.3e-80 302.4 242 62.8
Mapoly0033s0014 Marchantia polymorpha HOM05D004635 ORTHO05D005899 8.6e-69 265.8 547 34.4
BcaC04g18687 Brassica carinata HOM05D004635 ORTHO05D005899 2.8e-67 260.8 371 44.5
BolC9t58686H Brassica oleracea HOM05D004635 ORTHO05D005899 4.7e-67 260.0 362 45.3
RcHm_v2.0_Chr7g0211961 Rosa chinensis HOM05D004635 ORTHO05D005899 8.3e-64 249.2 199 62.8
CBR_g50931 Chara braunii HOM05D004635 ORTHO05D005899 2.4e-63 247.7 773 31.0
C09p58220 Brassica napus HOM05D000111 ORTHO05D000134 5.4e-63 246.5 371 43.1
BcaC08g44514 Brassica carinata HOM05D004635 ORTHO05D005899 1.7e-61 241.5 149 71.8
C06p19660 Brassica napus HOM05D004635 ORTHO05D005899 5.1e-45 186.8 147 65.3
MCO14G249 Micromonas commoda HOM05D004635 ORTHO05D005899 5.6e-44 183.3 622 28.1
PRCOL_00006831 Prasinoderma coloniale HOM05D004635 ORTHO05D005899 2.4e-42 177.9 589 27.3
QL12p018319 Quercus lobata HOM05D004635 ORTHO05D005899 6.9e-42 176.4 414 35.3
Cre01.g031750 Chlamydomonas reinhardtii HOM05D004635 ORTHO05D005899 1.2e-41 175.6 548 29.0
VMungo1127G2192 Vigna mungo HOM05D004635 ORTHO05D005899 1.2e-41 175.6 185 51.9
BcaC08g44517 Brassica carinata HOM05D004635 ORTHO05D005899 9.3e-31 139.4 270 39.3
Solyc12g015770.3 Solanum lycopersicum HOM05D000074 ORTHO05D001262 1.8e-21 108.6 60 80.0
EL10Ac8g19215 Beta vulgaris HOM05D000238 ORTHO05D001043 3.9e-21 107.5 84 66.7
Lj2C188G12 Lonicera japonica HOM05D004635 ORTHO05D005899 1.2e-17 95.9 252 32.9
Lj2C188G13 Lonicera japonica HOM05D004635 ORTHO05D005899 1.3e-16 92.4 87 58.6
EL10Ac5g10794 Beta vulgaris HOM05D004635 ORTHO05D005899 6.7e-13 80.1 65 67.7
AL4G15290 Arabidopsis lyrata HOM05D004635 ORTHO05D079484 5.0e-08 63.9 90 43.3
arahy.Tifrunner.gnm1.ann1.CCN99U Arachis hypogaea HOM05D004635 ORTHO05D085572 6.5e-08 63.5 47 70.2
Sopen12g007660 Solanum pennellii HOM05D000006 ORTHO05D000695 9.4e-07 59.7 40 65.0


User provided reference genes

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