Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.009G217200 Phaseolus vulgaris HOM05D006136 ORTHO05D007244 0.0e+00 1093.2 608 100.0
VMungo1309G0146 Vigna mungo HOM05D006136 ORTHO05D007244 5.0e-239 831.2 618 77.2
Glyma.15G193100 Glycine max HOM05D006136 ORTHO05D007244 3.9e-228 795.0 622 70.7
Glyma.09G084800 Glycine max HOM05D006136 ORTHO05D007244 1.1e-222 776.9 620 69.2
Lj6g0010551 Lotus japonicus HOM05D006136 ORTHO05D007244 2.6e-171 606.3 663 57.9
Lalb_Chr08g0233201 Lupinus albus HOM05D006136 ORTHO05D007244 5.1e-167 592.0 649 57.9
Psat1g019160 Pisum sativum HOM05D006136 ORTHO05D007244 2.1e-165 586.6 686 57.6
Medtr2g048340 Medicago truncatula HOM05D006136 ORTHO05D007244 2.1e-157 560.1 665 54.7
arahy.Tifrunner.gnm1.ann1.46MDAV Arachis hypogaea HOM05D006136 ORTHO05D007244 2.1e-149 533.5 617 52.4
Ca_02520_v3 Cicer arietinum L. HOM05D006136 ORTHO05D007244 2.1e-136 490.3 607 48.6
TPR.G18712 Trifolium pratense HOM05D006136 ORTHO05D007244 2.6e-123 446.8 612 50.7
Cfa012873 Carpinus fangiana HOM05D006136 ORTHO05D007244 7.7e-107 392.1 662 41.8
QL11p005727 Quercus lobata HOM05D006136 ORTHO05D007244 1.2e-99 368.2 781 36.1
GSVIVG01038350001 Vitis vinifera HOM05D006136 ORTHO05D007244 5.0e-98 362.8 611 39.3
QL05p072260 Quercus lobata HOM05D000321 ORTHO05D007244 2.1e-96 357.5 632 40.7
CSS0003139 Camellia sinensis var. sinensis HOM05D006136 ORTHO05D007244 3.7e-93 346.7 633 38.2
Prupe.1G000700 Prunus persica HOM05D006136 ORTHO05D007244 3.2e-89 333.6 633 40.1
CiPaw.07G237600 Carya illinoinensis HOM05D006136 ORTHO05D007244 4.7e-88 329.7 659 37.9
Dinv12632 Davidia involucrata HOM05D006136 ORTHO05D002774 8.8e-87 325.5 603 38.0
Manes.02G224001 Manihot esculenta HOM05D006136 ORTHO05D007244 1.2e-86 325.1 629 36.9
Manes.11G052190 Manihot esculenta HOM05D006136 ORTHO05D007244 3.4e-86 323.6 629 36.9
Potri.018G151300 Populus trichocarpa HOM05D006136 ORTHO05D007244 9.8e-86 322.0 645 38.0
Cpa.g.sc46.113 Carica papaya HOM05D006136 ORTHO05D007244 2.4e-84 317.4 766 32.9
TAR626G0660 Trochodendron aralioides HOM05D006136 ORTHO05D007244 1.1e-81 308.5 645 35.8
Gohir.A08G016500 Gossypium hirsutum HOM05D006136 ORTHO05D007244 1.2e-80 305.1 703 35.0
Gohir.D08G026500 Gossypium hirsutum HOM05D006136 ORTHO05D007244 1.6e-80 304.7 701 34.2
COL.COLO4_09001 Corchorus olitorius HOM05D006136 ORTHO05D007244 3.6e-80 303.5 730 34.5
Atru.chr7.1014 Acer truncatum HOM05D006136 ORTHO05D007244 6.1e-80 302.8 785 31.7
Gorai.004G023000 Gossypium raimondii HOM05D006136 ORTHO05D007244 8.0e-80 302.4 707 34.4
Sabra18G0127000 Salix brachista HOM05D006136 ORTHO05D007244 8.0e-80 302.4 645 37.8
MD04G1000700 Malus domestica HOM05D006136 ORTHO05D007244 1.4e-79 301.6 730 34.4
Thecc.09G202200 Theobroma cacao HOM05D006136 ORTHO05D007244 1.5e-78 298.1 700 33.7
Ciclev10007497m.g Citrus clementina HOM05D006136 ORTHO05D007244 2.0e-78 297.7 798 32.5
Lj9A583T57 Lonicera japonica HOM05D006136 ORTHO05D007244 3.1e-76 290.4 694 38.3
Haze_21244 Corylus avellana HOM05D006136 ORTHO05D007244 4.1e-76 290.0 594 39.4
TWI32G0914 Tripterygium wilfordii HOM05D006136 ORTHO05D007244 7.0e-76 289.3 682 32.8
Rhsim08G0117200 Rhododendron simsii HOM05D006136 ORTHO05D007244 7.8e-75 285.8 724 33.3
RcHm_v2.0_Chr4g0384741 Rosa chinensis HOM05D006136 ORTHO05D007244 5.0e-74 283.1 689 36.3
Duzib170G0744 Durio zibethinus HOM05D006136 ORTHO05D007244 8.6e-74 282.3 712 32.7
ClCG03G011600 Citrullus lanatus HOM05D006136 ORTHO05D007244 2.8e-72 277.3 695 34.2
Oeu000955.1 Olea europaea HOM05D006136 ORTHO05D007244 3.6e-72 276.9 635 33.2
CANSAT01G2594 Cannabis sativa HOM05D006136 ORTHO05D007244 6.1e-72 276.2 671 35.8
MELO3C010014.2 Cucumis melo HOM05D006136 ORTHO05D007244 8.0e-72 275.8 655 33.9
FAN12G0507 Fragaria x ananassa HOM05D006136 ORTHO05D007244 1.0e-71 275.4 686 33.4
FAN17G2087 Fragaria x ananassa HOM05D006136 ORTHO05D007244 1.8e-71 274.6 684 33.8
PSO478G4925 Papaver somniferum HOM05D006136 ORTHO05D007244 3.1e-71 273.9 729 32.0
CSS0019621 Camellia sinensis var. sinensis HOM05D006136 ORTHO05D007244 2.0e-70 271.2 427 40.7
vmacro17832 Vaccinium macrocarpon HOM05D006136 ORTHO05D007244 2.0e-70 271.2 674 35.5
DCAR_020445 Daucus carota HOM05D006136 ORTHO05D002774 5.8e-70 269.6 699 31.2
Eucgr.C02149 Eucalyptus grandis HOM05D006136 ORTHO05D007244 1.3e-69 268.5 699 32.2
Thhalv10012942m.g Eutrema salsugineum HOM05D006136 ORTHO05D007244 1.4e-68 265.0 681 32.6
PSO782G1690 Papaver somniferum HOM05D006136 ORTHO05D007244 4.1e-68 263.5 727 31.2
Peaxi162Scf00474g00018 Petunia axillaris HOM05D006136 ORTHO05D007244 4.1e-68 263.5 699 31.9
CsaV3_1G044190 Cucumis sativus L. HOM05D006136 ORTHO05D007244 1.3e-66 258.5 669 33.3
EL10Ac2g03821 Beta vulgaris HOM05D006136 ORTHO05D007244 3.9e-66 256.9 687 30.9
Sp6g19810 Schrenkiella parvula HOM05D006136 ORTHO05D007244 5.0e-66 256.5 684 31.4
PGSC0003DMG400013541 Solanum tuberosum HOM05D006136 ORTHO05D007244 1.5e-65 255.0 727 31.8
Lsat_1_v5_gn_5_82020 Lactuca sativa HOM05D006136 ORTHO05D007244 2.8e-64 250.8 603 33.5
Sc06g0001020 Simmondsia chinensis HOM05D006136 ORTHO05D007244 4.7e-64 250.0 708 31.2
THA.LOC104803376 Tarenaya hassleriana HOM05D006136 ORTHO05D007244 8.0e-64 249.2 722 31.4
BolC9t57856H Brassica oleracea HOM05D006136 ORTHO05D007244 1.8e-63 248.1 735 32.1
C09p50030 Brassica napus HOM05D006136 ORTHO05D007244 2.3e-63 247.7 735 32.1
Aqoxy7G02564 Aquilegia oxysepala HOM05D006136 ORTHO05D007244 4.0e-63 246.9 801 30.6
AUR62009114 Chenopodium quinoa HOM05D000163 ORTHO05D007244 6.8e-63 246.1 738 32.8
Aa31LG3G13960 Aethionema arabicum HOM05D006136 ORTHO05D007244 8.9e-63 245.7 429 45.7
MSTRG.26507 Avicennia marina HOM05D006136 ORTHO05D007244 1.5e-62 245.0 668 30.2
BcaB08g36165 Brassica carinata HOM05D006136 ORTHO05D007244 3.4e-62 243.8 747 31.7
Carub.0008s1868 Capsella rubella HOM05D006136 ORTHO05D007244 5.8e-62 243.0 392 40.8
Lj1g0026291 Lotus japonicus HOM05D006136 ORTHO05D007244 7.5e-62 242.7 306 48.7
PGR044G0474 Punica granatum HOM05D006136 ORTHO05D007244 7.5e-62 242.7 671 35.6
BcaC04g19905 Brassica carinata HOM05D006136 ORTHO05D007244 1.3e-61 241.9 743 32.0
AL8G34230 Arabidopsis lyrata HOM05D006136 ORTHO05D007244 1.7e-61 241.5 768 29.2
Cc06_g23510 Coffea canephora HOM05D006136 ORTHO05D007244 1.7e-61 241.5 620 32.4
MBI16_g40727_MAGBIO Magnolia biondii HOM05D006136 ORTHO05D007244 3.7e-61 240.4 648 32.9
Nitab4.5_0000807g0150 Nicotiana tabacum HOM05D006136 ORTHO05D007244 3.7e-61 240.4 759 28.6
CARHR271930 Cardamine hirsuta HOM05D006136 ORTHO05D007244 5.4e-60 236.5 749 30.2
SalBow5G5580 Salvia bowleyana HOM05D006136 ORTHO05D007244 7.0e-60 236.1 677 30.9
AT5G58130 Arabidopsis thaliana HOM05D006136 ORTHO05D007244 9.2e-60 235.7 415 39.5
BraA10t43623Z Brassica rapa HOM05D006136 ORTHO05D007244 4.6e-59 233.4 398 44.0
A10p16060 Brassica napus HOM05D006136 ORTHO05D007244 7.8e-59 232.6 399 44.1
Actinidia33603 Actinidia chinensis HOM05D006136 ORTHO05D007244 1.7e-58 231.5 325 43.1
Zm00001eb209220 Zea mays HOM05D006136 ORTHO05D007244 1.7e-58 231.5 619 32.3
ECA234G2139 Erigeron canadensis HOM05D006136 ORTHO05D007244 8.6e-58 229.2 706 30.6
HanXRQChr10g0309281 Helianthus annuus HOM05D006136 ORTHO05D007244 1.5e-57 228.4 683 34.4
Sopen07g022390 Solanum pennellii HOM05D006136 ORTHO05D007244 5.6e-57 226.5 787 31.0
AUR62039148 Chenopodium quinoa HOM05D006136 ORTHO05D007244 8.9e-55 219.2 730 30.4
FAN12G3399 Fragaria x ananassa HOM05D006136 ORTHO05D007244 5.8e-54 216.5 427 37.9
ATR0626G098 Amborella trichopoda HOM05D006136 ORTHO05D007244 3.7e-53 213.8 617 33.7
Os02g0138200 Oryza sativa ssp. japonica HOM05D006136 ORTHO05D007244 4.9e-53 213.4 620 31.1
Migut.L01610 Erythranthe guttata HOM05D006136 ORTHO05D007244 6.4e-53 213.0 696 33.8
Nitab4.5_0000170g0140 Nicotiana tabacum HOM05D006136 ORTHO05D007244 1.2e-51 208.8 764 27.2
FAN22G1396 Fragaria x ananassa HOM05D006136 ORTHO05D007244 1.3e-50 205.3 617 31.6
Nn5g26953 Nelumbo nucifera HOM05D006136 ORTHO05D007244 6.6e-50 203.0 427 36.5
RcHm_v2.0_Chr5g0003141 Rosa chinensis HOM05D006136 ORTHO05D007244 1.5e-49 201.8 601 32.4
arahy.Tifrunner.gnm1.ann1.SWI1TY Arachis hypogaea HOM05D006136 ORTHO05D007244 7.3e-49 199.5 292 46.2
unitig_699.g19255 Utricularia gibba HOM05D006136 ORTHO05D007244 1.6e-48 198.4 221 48.4
SGA_v2.0_scaffold21G09584 Striga asiatica HOM05D006136 ORTHO05D007244 1.3e-45 188.7 645 28.5
HPP92_017041 Vanilla planifolia HOM05D006136 ORTHO05D007244 1.3e-45 188.7 442 33.0
SEGI_05126 Sequoiadendron giganteum HOM05D006136 ORTHO05D007244 8.7e-42 176.0 230 44.8
VMungo1309G2339 Vigna mungo HOM05D006136 ORTHO05D007244 5.4e-36 156.8 264 43.6
GSVIVG01038333001 Vitis vinifera HOM05D006136 ORTHO05D007244 1.0e-34 152.5 148 50.7
arahy.Tifrunner.gnm1.ann1.27MYTD Arachis hypogaea HOM05D006136 ORTHO05D007244 8.7e-34 149.4 134 60.4
arahy.Tifrunner.gnm1.ann1.QC7K1D Arachis hypogaea HOM05D006136 ORTHO05D007244 4.0e-31 140.6 95 72.6
CDE05G3219 Ceratophyllum demersum HOM05D006136 ORTHO05D007244 6.9e-31 139.8 326 32.8
Solyc07g042740.3 Solanum lycopersicum HOM05D006136 ORTHO05D007244 1.3e-29 135.6 149 45.0
arahy.Tifrunner.gnm1.ann1.Q88MA9 Arachis hypogaea HOM05D006136 ORTHO05D007244 1.4e-28 132.1 117 59.0
Glyma.07G231200 Glycine max HOM05D003235 ORTHO05D007244 2.4e-28 131.3 169 45.6
PGR044G0304 Punica granatum HOM05D006136 ORTHO05D007244 7.1e-28 129.8 636 28.0
SMO367G1245 Selaginella moellendorffii HOM05D006136 ORTHO05D007244 7.1e-28 129.8 162 49.4
AagrBONN_evm.TU.Sc2ySwM_228.2439 Anthoceros agrestis HOM05D006136 ORTHO05D007244 1.9e-25 121.7 177 40.7
Mapoly0169s0023 Marchantia polymorpha HOM05D006136 ORTHO05D007244 2.8e-24 117.9 201 38.3
FvH4_4g00130 Fragaria vesca HOM05D006136 ORTHO05D007244 3.1e-23 114.4 485 28.7
TPR.G20669 Trifolium pratense HOM05D006136 ORTHO05D007244 3.3e-17 94.4 77 67.5
Sed0020259 Sechium edule HOM05D006136 ORTHO05D007244 5.6e-17 93.6 489 26.8
Nitab4.5_0002310g0140 Nicotiana tabacum HOM05D006136 ORTHO05D007244 2.8e-16 91.3 170 35.9
Solyc07g042700.4 Solanum lycopersicum HOM05D006136 ORTHO05D007244 4.8e-16 90.5 160 38.1
Pp3c1_8430 Physcomitrium patens HOM05D006136 ORTHO05D007244 8.2e-16 89.7 108 46.3
TPR.G24034 Trifolium pratense HOM05D006136 ORTHO05D007244 7.6e-14 83.2 106 50.9
TPR.G24042 Trifolium pratense HOM05D006136 ORTHO05D007244 2.2e-13 81.6 55 65.5
Lsat_1_v5_gn_5_81880 Lactuca sativa HOM05D006136 ORTHO05D007244 6.1e-11 73.6 147 37.4
Hund03317 Selenicereus undatus HOM05D006136 ORTHO05D007244 6.1e-11 73.6 502 28.1
BcaC03g14120 Brassica carinata HOM05D009052 ORTHO05D011796 4.3e-09 67.4 75 54.7
Psat1g163200 Pisum sativum HOM05D000871 ORTHO05D008698 9.7e-09 66.2 45 66.7
Psat1g163240 Pisum sativum HOM05D007111 ORTHO05D008698 9.7e-09 66.2 45 66.7
C02p13590 Brassica napus HOM05D006136 ORTHO05D007244 1.3e-08 65.9 75 53.3
BolC2t07471H Brassica oleracea HOM05D006136 ORTHO05D007244 1.3e-08 65.9 75 53.3
Hma1.2p1_2895F.1_g329976 Hydrangea macrophylla HOM05D006136 ORTHO05D007244 2.8e-08 64.7 61 54.1
CBR_g39420 Chara braunii HOM05D006136 ORTHO05D007244 2.4e-07 61.6 149 31.5
Cre14.g633400 Chlamydomonas reinhardtii HOM05D006136 ORTHO05D007244 4.5e-06 57.4 112 34.8


User provided reference genes

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