Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.009G140100 Phaseolus vulgaris HOM05D004874 ORTHO05D006796 0.0e+00 2622.0 1271 100.0
VMungo1309G2704 Vigna mungo HOM05D004874 ORTHO05D006796 0.0e+00 2535.4 1272 96.1
Glyma.04G220000 Glycine max HOM05D004874 ORTHO05D006796 0.0e+00 2478.4 1271 94.3
Glyma.06G145900 Glycine max HOM05D004874 ORTHO05D006796 0.0e+00 2471.4 1271 93.7
Lj1g0000337 Lotus japonicus HOM05D004874 ORTHO05D006796 0.0e+00 2331.2 1269 87.8
Medtr3g094770 Medicago truncatula HOM05D004874 ORTHO05D006796 0.0e+00 2290.0 1270 86.2
Ca_16889_v3 Cicer arietinum L. HOM05D004874 ORTHO05D006796 0.0e+00 2281.5 1270 86.1
Lalb_Chr11g0068041 Lupinus albus HOM05D004874 ORTHO05D006796 0.0e+00 2258.8 1269 85.1
TPR.G23744 Trifolium pratense HOM05D004874 ORTHO05D006796 0.0e+00 2255.3 1270 84.5
Psat5g065960 Pisum sativum HOM05D004874 ORTHO05D006796 0.0e+00 2250.3 1269 84.7
arahy.Tifrunner.gnm1.ann1.M2IALY Arachis hypogaea HOM05D004874 ORTHO05D006796 0.0e+00 2171.7 1269 81.3
arahy.Tifrunner.gnm1.ann1.ZQBN5H Arachis hypogaea HOM05D004874 ORTHO05D006796 0.0e+00 2169.4 1269 81.3
Lalb_Chr13g0296191 Lupinus albus HOM05D004874 ORTHO05D006796 0.0e+00 2030.8 1270 76.9
Thecc.01G111200 Theobroma cacao HOM05D004874 ORTHO05D006796 0.0e+00 2022.7 1269 76.0
Atru.chr4.387 Acer truncatum HOM05D004874 ORTHO05D006796 0.0e+00 1997.6 1276 75.4
Gorai.011G111800 Gossypium raimondii HOM05D004874 ORTHO05D006796 0.0e+00 1994.9 1270 75.1
Gohir.A10G086600 Gossypium hirsutum HOM05D004874 ORTHO05D006796 0.0e+00 1992.2 1270 75.3
Ciclev10024728m.g Citrus clementina HOM05D004874 ORTHO05D006796 0.0e+00 1989.2 1273 74.9
Gohir.D10G102100 Gossypium hirsutum HOM05D004874 ORTHO05D006796 0.0e+00 1988.4 1270 75.0
Potri.005G083800 Populus trichocarpa HOM05D004874 ORTHO05D006796 0.0e+00 1967.2 1276 74.1
Dinv19497 Davidia involucrata HOM05D004874 ORTHO05D006796 0.0e+00 1959.1 1274 74.5
TWI74G1507 Tripterygium wilfordii HOM05D004874 ORTHO05D006796 0.0e+00 1952.2 1271 73.9
Manes.13G077640 Manihot esculenta HOM05D004874 ORTHO05D006796 0.0e+00 1946.4 1273 73.4
MD15G1333600 Malus domestica HOM05D004874 ORTHO05D006796 0.0e+00 1942.9 1271 74.0
QL06p032401 Quercus lobata HOM05D004874 ORTHO05D006796 0.0e+00 1937.9 1274 72.8
CANSAT01G0647 Cannabis sativa HOM05D004874 ORTHO05D006796 0.0e+00 1937.5 1275 72.2
RcHm_v2.0_Chr2g0116231 Rosa chinensis HOM05D004874 ORTHO05D006796 0.0e+00 1937.5 1271 73.4
Sabra05G0068900 Salix brachista HOM05D004874 ORTHO05D006796 0.0e+00 1936.8 1284 72.7
GSVIVG01022217001 Vitis vinifera HOM05D004874 ORTHO05D006796 0.0e+00 1931.8 1276 73.2
Prupe.6G174100 Prunus persica HOM05D004874 ORTHO05D006796 0.0e+00 1931.4 1271 74.0
FvH4_1g22150 Fragaria vesca HOM05D004874 ORTHO05D006796 0.0e+00 1924.8 1274 72.4
Potri.007G081900 Populus trichocarpa HOM05D004874 ORTHO05D006796 0.0e+00 1917.5 1275 72.3
Actinidia15577 Actinidia chinensis HOM05D004874 ORTHO05D006796 0.0e+00 1910.2 1276 71.3
CSS0018271 Camellia sinensis var. sinensis HOM05D004874 ORTHO05D006796 0.0e+00 1909.4 1276 71.4
FAN28G2703 Fragaria x ananassa HOM05D004874 ORTHO05D006796 0.0e+00 1900.6 1274 71.8
Haze_25029 Corylus avellana HOM05D004874 ORTHO05D006796 0.0e+00 1899.4 1238 74.3
FAN26G2351 Fragaria x ananassa HOM05D004874 ORTHO05D006796 0.0e+00 1899.0 1274 71.8
FAN23G3027 Fragaria x ananassa HOM05D004874 ORTHO05D006796 0.0e+00 1897.5 1274 71.7
FAN19G0866 Fragaria x ananassa HOM05D004874 ORTHO05D006796 0.0e+00 1894.0 1300 70.6
Rhsim10G0151300 Rhododendron simsii HOM05D004874 ORTHO05D006796 0.0e+00 1885.5 1276 71.0
CSS0002284 Camellia sinensis var. sinensis HOM05D004874 ORTHO05D006796 0.0e+00 1875.1 1284 70.1
ClCG01G016180 Citrullus lanatus HOM05D004874 ORTHO05D006796 0.0e+00 1854.7 1270 69.8
CsaV3_6G042450 Cucumis sativus L. HOM05D004874 ORTHO05D006796 0.0e+00 1838.5 1270 69.4
Manes.12G141800 Manihot esculenta HOM05D004874 ORTHO05D006796 0.0e+00 1832.8 1274 69.2
PSO541G0735 Papaver somniferum HOM05D004874 ORTHO05D006796 0.0e+00 1827.0 1275 68.8
PSO675G8458 Papaver somniferum HOM05D004874 ORTHO05D006796 0.0e+00 1820.8 1275 68.9
Nn5g28922 Nelumbo nucifera HOM05D004874 ORTHO05D006796 0.0e+00 1819.3 1277 69.3
Eucgr.H04838 Eucalyptus grandis HOM05D004874 ORTHO05D006796 0.0e+00 1802.7 1272 68.0
Peaxi162Scf00323g00112 Petunia axillaris HOM05D004874 ORTHO05D006796 0.0e+00 1802.3 1244 68.9
Aqoxy6G00493 Aquilegia oxysepala HOM05D004874 ORTHO05D006796 0.0e+00 1801.6 1283 67.7
THA.LOC104804146 Tarenaya hassleriana HOM05D004874 ORTHO05D006796 0.0e+00 1792.7 1268 67.6
Cc07_g16070 Coffea canephora HOM05D004874 ORTHO05D006796 0.0e+00 1792.3 1274 67.1
EL10Ac6g14746 Beta vulgaris HOM05D004874 ORTHO05D006796 0.0e+00 1788.1 1351 63.9
CARHR113090 Cardamine hirsuta HOM05D004874 ORTHO05D006796 0.0e+00 1783.8 1275 67.6
Sopen04g023580 Solanum pennellii HOM05D004874 ORTHO05D006796 0.0e+00 1782.3 1276 67.6
Carub.0004s0115 Capsella rubella HOM05D004874 ORTHO05D006796 0.0e+00 1781.5 1278 67.7
CAN.G1728.1 Capsicum annuum HOM05D004874 ORTHO05D006796 0.0e+00 1780.4 1272 67.1
Oeu028379.4 Olea europaea HOM05D004874 ORTHO05D006796 0.0e+00 1780.4 1376 62.8
Solyc04g054140.4 Solanum lycopersicum HOM05D004874 ORTHO05D006796 0.0e+00 1778.8 1281 67.4
AT2G22010 Arabidopsis thaliana HOM05D004874 ORTHO05D006796 0.0e+00 1777.7 1277 67.6
AL4G11330 Arabidopsis lyrata HOM05D004874 ORTHO05D006796 0.0e+00 1771.9 1274 67.3
Sed0015455 Sechium edule HOM05D004874 ORTHO05D006796 0.0e+00 1768.1 1274 66.6
Sp4g01070 Schrenkiella parvula HOM05D004874 ORTHO05D006796 0.0e+00 1766.1 1274 67.0
Migut.H02425 Erythranthe guttata HOM05D004874 ORTHO05D006796 0.0e+00 1747.6 1276 66.2
BcaB08g35028 Brassica carinata HOM05D004874 ORTHO05D006796 0.0e+00 1745.3 1277 66.3
BcaC07g41106 Brassica carinata HOM05D004874 ORTHO05D006796 0.0e+00 1732.6 1275 66.1
C08p41080 Brassica napus HOM05D004874 ORTHO05D006796 0.0e+00 1731.5 1275 66.2
ECA238G3208 Erigeron canadensis HOM05D004874 ORTHO05D006796 0.0e+00 1729.5 1271 65.1
HanXRQChr14g0446191 Helianthus annuus HOM05D004874 ORTHO05D006796 0.0e+00 1727.2 1273 65.3
Thhalv10000015m.g Eutrema salsugineum HOM05D004874 ORTHO05D006796 0.0e+00 1726.5 1270 65.9
BolC8t51674H Brassica oleracea HOM05D004874 ORTHO05D006796 0.0e+00 1724.9 1281 65.9
Lsat_1_v5_gn_2_65401 Lactuca sativa HOM05D004874 ORTHO05D006796 0.0e+00 1724.1 1276 65.2
A09p57840 Brassica napus HOM05D004874 ORTHO05D006796 0.0e+00 1723.0 1277 65.8
PGR102G1404 Punica granatum HOM05D004874 ORTHO05D006796 0.0e+00 1720.3 1272 65.6
AUR62016271 Chenopodium quinoa HOM05D004874 ORTHO05D006796 0.0e+00 1714.5 1273 64.0
BraA09t41177Z Brassica rapa HOM05D004874 ORTHO05D006796 0.0e+00 1713.4 1283 65.5
AUR62003312 Chenopodium quinoa HOM05D004874 ORTHO05D006796 0.0e+00 1710.3 1273 63.9
MELO3C007488.2 Cucumis melo HOM05D004874 ORTHO05D006796 0.0e+00 1704.9 1279 65.3
SGA_v2.0_scaffold2G01299 Striga asiatica HOM05D004874 ORTHO05D006796 0.0e+00 1694.9 1369 61.9
ATR0564G436 Amborella trichopoda HOM05D004874 ORTHO05D006796 0.0e+00 1686.4 1274 63.3
HanXRQChr10g0295251 Helianthus annuus HOM05D004874 ORTHO05D006796 0.0e+00 1686.4 1273 63.4
Hund19660 Selenicereus undatus HOM05D004874 ORTHO05D006796 0.0e+00 1679.5 1206 66.9
TAR628G0415 Trochodendron aralioides HOM05D004874 ORTHO05D006796 0.0e+00 1675.2 1187 69.4
SalBow6G4347 Salvia bowleyana HOM05D004874 ORTHO05D006796 0.0e+00 1648.3 1181 67.0
DCAR_014257 Daucus carota HOM05D004874 ORTHO05D006796 0.0e+00 1628.2 1268 63.6
Aa31LG7G14640 Aethionema arabicum HOM05D004874 ORTHO05D006796 0.0e+00 1624.4 1272 62.6
MD01G1017400 Malus domestica HOM05D004874 ORTHO05D006796 0.0e+00 1593.2 1025 75.4
TAR376G0110 Trochodendron aralioides HOM05D004874 ORTHO05D006796 0.0e+00 1569.7 1043 71.9
Zm00001eb328050 Zea mays HOM05D004874 ORTHO05D006796 0.0e+00 1547.7 1275 58.8
Nitab4.5_0000156g0190 Nicotiana tabacum HOM05D004874 ORTHO05D006796 0.0e+00 1533.1 1044 69.9
Duzib147G0760 Durio zibethinus HOM05D004874 ORTHO05D006796 0.0e+00 1496.9 1266 60.7
CDE07G0820 Ceratophyllum demersum HOM05D004874 ORTHO05D006796 0.0e+00 1491.1 1270 57.1
PGSC0003DMG400012951 Solanum tuberosum HOM05D004874 ORTHO05D006796 0.0e+00 1481.8 1049 67.9
SEGI_33214 Sequoiadendron giganteum HOM05D004874 ORTHO05D006796 0.0e+00 1428.7 1269 55.9
COL.COLO4_11028 Corchorus olitorius HOM05D004874 ORTHO05D006796 0.0e+00 1419.1 1270 58.3
CDE04G1796 Ceratophyllum demersum HOM05D004874 ORTHO05D006796 0.0e+00 1336.6 1203 54.7
unitig_899.g14600 Utricularia gibba HOM05D004874 ORTHO05D006796 0.0e+00 1306.2 1180 56.0
FAN01G2715 Fragaria x ananassa HOM05D004874 ORTHO05D006796 0.0e+00 1266.5 941 65.8
Cpa.g.sc196.7 Carica papaya HOM05D004874 ORTHO05D006796 0.0e+00 1228.0 830 69.4
Lj2C562G3 Lonicera japonica HOM05D004874 ORTHO05D006796 0.0e+00 1224.2 833 69.9
CiPaw.04G092800 Carya illinoinensis HOM05D004874 ORTHO05D006796 0.0e+00 1209.5 808 73.6
Ah.02g124400 Amaranthus hybridus HOM05D004874 ORTHO05D006796 0.0e+00 1208.4 878 64.1
FAN06G3019 Fragaria x ananassa HOM05D004874 ORTHO05D006796 0.0e+00 1205.3 942 63.5
SMO143G0116 Selaginella moellendorffii HOM05D004874 ORTHO05D006796 0.0e+00 1162.1 1192 50.8
MBI02_g13022_MAGBIO Magnolia biondii HOM05D004874 ORTHO05D006796 0.0e+00 1146.7 834 63.9
FAN06G4447 Fragaria x ananassa HOM05D004874 ORTHO05D006796 0.0e+00 1136.7 942 60.7
Mapoly0047s0138 Marchantia polymorpha HOM05D004874 ORTHO05D006796 0.0e+00 1132.9 1326 46.8
Pp3c1_33900 Physcomitrium patens HOM05D004874 ORTHO05D006796 0.0e+00 1127.5 1244 48.6
Pp3c2_2760 Physcomitrium patens HOM05D004874 ORTHO05D006796 0.0e+00 1110.9 1328 46.1
vmacro12908 Vaccinium macrocarpon HOM05D004874 ORTHO05D006796 0.0e+00 1109.4 779 66.5
Oeu030684.1 Olea europaea HOM05D004874 ORTHO05D006796 0.0e+00 1097.8 758 69.1
Pp3c17_14550 Physcomitrium patens HOM05D004874 ORTHO05D006796 0.0e+00 1092.4 1331 46.1
FAN10G0201 Fragaria x ananassa HOM05D004874 ORTHO05D006796 5.8e-306 1054.7 690 72.8
MSTRG.2539 Avicennia marina HOM05D004874 ORTHO05D006796 1.0e-302 1043.9 758 68.3
AagrBONN_evm.TU.Sc2ySwM_228.911 Anthoceros agrestis HOM05D004874 ORTHO05D006796 1.5e-301 1040.0 1149 48.7
CBR_g4334 Chara braunii HOM05D004874 ORTHO05D006796 3.3e-237 826.2 1462 35.7
HPP92_016848 Vanilla planifolia HOM05D004874 ORTHO05D006796 1.1e-235 821.2 622 64.8
FvH4_7g04730 Fragaria vesca HOM05D004874 ORTHO05D006796 5.0e-233 812.4 563 68.7
FAN03G2613 Fragaria x ananassa HOM05D004874 ORTHO05D006796 2.0e-221 773.9 500 74.2
HPP92_016847 Vanilla planifolia HOM05D004874 ORTHO05D006796 5.5e-208 729.2 615 54.3
Oeu030685.1 Olea europaea HOM05D004874 ORTHO05D006796 1.2e-199 701.4 503 63.6
Lj2A562T49 Lonicera japonica HOM05D004874 ORTHO05D006796 3.6e-191 673.3 464 72.2
MBI02_g44126_MAGBIO Magnolia biondii HOM05D004874 ORTHO05D006796 9.3e-139 499.2 358 70.4
Cpa.g.sc196.6 Carica papaya HOM05D004874 ORTHO05D006796 8.7e-137 492.7 317 75.4
Cc07_g14920 Coffea canephora HOM05D004874 ORTHO05D006796 2.6e-133 481.1 391 62.1
Ah.02g124390 Amaranthus hybridus HOM05D004874 ORTHO05D006796 1.5e-128 465.3 365 64.4
MCO16G187 Micromonas commoda HOM05D004874 ORTHO05D006796 4.8e-103 380.6 1392 26.7
Os07g0626900 Oryza sativa ssp. japonica HOM05D004874 ORTHO05D006796 1.1e-86 326.2 259 62.2
Cre12.g519150 Chlamydomonas reinhardtii HOM05D004874 ORTHO05D006796 1.7e-84 318.9 1233 25.2
Sabra07G0068700 Salix brachista HOM05D004874 ORTHO05D006796 3.9e-52 211.5 271 45.4
Nitab4.5_0010573g0010 Nicotiana tabacum HOM05D004874 ORTHO05D006796 3.8e-47 194.9 145 62.8
FvH4_7g04731 Fragaria vesca HOM05D004874 ORTHO05D006796 6.4e-47 194.1 156 63.5
Solyc05g055570.3 Solanum lycopersicum HOM05D004874 ORTHO05D014502 8.4e-31 140.6 112 65.2
HanXRQChr11g0324541 Helianthus annuus HOM05D004874 ORTHO05D006796 2.6e-24 119.0 78 67.9
Nitab4.5_0000904g0190 Nicotiana tabacum HOM05D004874 ORTHO05D006796 1.1e-14 87.0 46 89.1
Zm00001eb137300 Zea mays HOM05D004874 ORTHO05D006796 3.2e-14 85.5 68 55.9
BcaC09g48952 Brassica carinata HOM05D004874 ORTHO05D014502 6.1e-13 81.3 53 71.7
BcaC06g36156 Brassica carinata HOM05D004874 ORTHO05D014502 1.4e-12 80.1 53 69.8
BcaC04g21885 Brassica carinata HOM05D004874 ORTHO05D014502 1.5e-11 76.6 56 64.3
HanXRQChr11g0341101 Helianthus annuus HOM05D004874 ORTHO05D006796 2.2e-10 72.8 50 66.0
C07p07140 Brassica napus HOM05D004874 ORTHO05D014502 3.7e-10 72.0 48 68.8
C09p26200 Brassica napus HOM05D004874 ORTHO05D014502 3.7e-10 72.0 48 70.8
BolC9t55523H Brassica oleracea HOM05D004874 ORTHO05D014502 3.7e-10 72.0 48 70.8
C01p44130 Brassica napus HOM05D004874 ORTHO05D014502 6.3e-10 71.2 48 68.8
HanXRQChr12g0385291 Helianthus annuus HOM05D004874 ORTHO05D006796 1.1e-09 70.5 44 75.0
A01p36370 Brassica napus HOM05D004874 ORTHO05D014502 1.4e-09 70.1 48 66.7
A02p42430 Brassica napus HOM05D004874 ORTHO05D014502 1.4e-09 70.1 48 66.7
BolC7t41133H Brassica oleracea HOM05D004874 ORTHO05D014502 1.4e-09 70.1 48 66.7
BraA01t04208Z Brassica rapa HOM05D004874 ORTHO05D014502 1.4e-09 70.1 48 66.7
BraA02t09174Z Brassica rapa HOM05D004874 ORTHO05D014502 1.4e-09 70.1 48 66.7
Pp3c19_1530 Physcomitrium patens HOM05D003906 ORTHO05D004776 2.4e-09 69.3 95 36.8
MCO11G679 Micromonas commoda HOM05D000032 ORTHO05D028824 1.2e-08 67.0 152 29.6
Os03g0428000 Oryza sativa ssp. japonica HOM05D004874 ORTHO05D006796 1.5e-08 66.6 80 47.5
Cre09.g387801 Chlamydomonas reinhardtii HOM05D003906 ORTHO05D004776 2.6e-08 65.9 135 34.1
PRCOL_00002342 Prasinoderma coloniale HOM05D003906 ORTHO05D004776 5.9e-08 64.7 96 38.5
Zm00001eb243840 Zea mays HOM05D003906 ORTHO05D004776 1.7e-07 63.2 118 33.1
Os02g0556600 Oryza sativa ssp. japonica HOM05D003906 ORTHO05D004776 3.8e-07 62.0 118 35.6
Zm00001eb182000 Zea mays HOM05D003906 ORTHO05D004776 3.8e-07 62.0 118 33.9
unitig_899.g14599 Utricularia gibba HOM05D002815 ORTHO05D025745 6.5e-07 61.2 67 40.3
AagrBONN_evm.TU.Sc2ySwM_228.213 Anthoceros agrestis HOM05D004797 ORTHO05D005752 1.1e-06 60.5 181 29.8
CBR_g30766 Chara braunii HOM05D000019 ORTHO05D000048 1.4e-06 60.1 88 35.2
A05p26160 Brassica napus HOM05D004874 ORTHO05D014502 1.9e-06 59.7 50 58.0
Mapoly0036s0095 Marchantia polymorpha HOM05D004797 ORTHO05D005752 3.2e-06 58.9 196 29.6


User provided reference genes

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