Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.008G190000 Phaseolus vulgaris HOM05D006371 ORTHO05D008309 0.0e+00 1563.5 791 100.0
Glyma.14G190200 Glycine max HOM05D006371 ORTHO05D008309 0.0e+00 1351.3 815 85.3
Glyma.02G223400 Glycine max HOM05D006371 ORTHO05D008309 0.0e+00 1350.5 799 86.2
Lalb_Chr04g0252451 Lupinus albus HOM05D006371 ORTHO05D008309 0.0e+00 1155.6 796 76.1
LjContig00155g0006571 Lotus japonicus HOM05D006371 ORTHO05D008309 0.0e+00 1154.0 801 75.5
arahy.Tifrunner.gnm1.ann1.BM1T67 Arachis hypogaea HOM05D006371 ORTHO05D008309 0.0e+00 1149.0 820 73.3
arahy.Tifrunner.gnm1.ann1.YIC3VW Arachis hypogaea HOM05D006371 ORTHO05D008309 0.0e+00 1144.4 809 73.9
Ca_05557_v3 Cicer arietinum L. HOM05D006371 ORTHO05D008309 0.0e+00 1120.1 802 72.6
TPR.G13852 Trifolium pratense HOM05D006371 ORTHO05D008309 0.0e+00 1099.3 807 70.8
Psat2g060760 Pisum sativum HOM05D006371 ORTHO05D008309 0.0e+00 1079.7 797 71.6
Medtr5g069430 Medicago truncatula HOM05D006371 ORTHO05D008309 5.9e-309 1063.9 833 68.3
Cfa014202 Carpinus fangiana HOM05D006371 ORTHO05D008309 8.3e-271 937.2 790 61.9
QL04p067039 Quercus lobata HOM05D006371 ORTHO05D008309 1.5e-267 926.4 785 61.8
CiPaw.03G283700 Carya illinoinensis HOM05D006371 ORTHO05D008309 7.1e-262 907.5 794 60.8
MD09G1130200 Malus domestica HOM05D006371 ORTHO05D008309 3.0e-252 875.5 820 59.1
Ciclev10014166m.g Citrus clementina HOM05D006371 ORTHO05D008309 7.3e-251 870.9 789 61.7
Gorai.007G165100 Gossypium raimondii HOM05D006371 ORTHO05D008309 1.1e-249 867.1 810 59.5
Gohir.A11G148000 Gossypium hirsutum HOM05D006371 ORTHO05D008309 1.2e-248 863.6 811 59.3
Thecc.01G199300 Theobroma cacao HOM05D006371 ORTHO05D008309 1.1e-246 857.1 826 57.4
TWI36G0955 Tripterygium wilfordii HOM05D006371 ORTHO05D008309 3.9e-244 848.6 827 57.2
Gohir.D11G154800 Gossypium hirsutum HOM05D006371 ORTHO05D008309 6.7e-244 847.8 810 58.5
CANSAT64G2089 Cannabis sativa HOM05D006371 ORTHO05D008309 1.5e-243 846.7 814 58.4
TAR627G0565 Trochodendron aralioides HOM05D006371 ORTHO05D008309 4.8e-242 841.6 806 58.1
FvH4_6g40410 Fragaria vesca HOM05D006371 ORTHO05D008309 5.8e-240 834.7 825 56.6
FAN05G5438 Fragaria x ananassa HOM05D006371 ORTHO05D008309 2.2e-239 832.8 823 55.9
FAN14G0004 Fragaria x ananassa HOM05D006371 ORTHO05D008309 2.9e-239 832.4 825 56.5
GSVIVG01030124001 Vitis vinifera HOM05D006371 ORTHO05D008309 3.8e-239 832.0 792 58.6
RcHm_v2.0_Chr2g0155641 Rosa chinensis HOM05D006371 ORTHO05D008309 3.2e-238 828.9 820 56.2
Duzib211G0069 Durio zibethinus HOM05D006371 ORTHO05D008309 7.1e-238 827.8 828 55.8
FAN02G4613 Fragaria x ananassa HOM05D006371 ORTHO05D008309 6.0e-237 824.7 825 55.3
Eucgr.A01367 Eucalyptus grandis HOM05D006371 ORTHO05D008309 6.7e-236 821.2 771 58.0
Potri.014G170300 Populus trichocarpa HOM05D006371 ORTHO05D008309 2.1e-234 816.2 821 55.9
Sabra14G0129800 Salix brachista HOM05D006371 ORTHO05D008309 2.8e-234 815.8 824 56.2
Manes.12G064500 Manihot esculenta HOM05D006371 ORTHO05D008309 4.0e-233 812.0 772 57.6
Duzib133G1082 Durio zibethinus HOM05D006371 ORTHO05D008309 6.9e-233 811.2 783 57.2
ClCG02G003000 Citrullus lanatus HOM05D006371 ORTHO05D008309 9.0e-233 810.8 800 58.1
MBI15_g38530_MAGBIO Magnolia biondii HOM05D006371 ORTHO05D008309 2.9e-231 805.8 790 57.5
MELO3C024185.2 Cucumis melo HOM05D006371 ORTHO05D008309 3.8e-231 805.4 812 55.9
Prupe.3G194900 Prunus persica HOM05D006371 ORTHO05D008309 6.5e-231 804.7 784 57.0
FAN09G0519 Fragaria x ananassa HOM05D006371 ORTHO05D008309 3.5e-229 798.9 777 56.9
PGR031G1410 Punica granatum HOM05D006371 ORTHO05D008309 2.3e-228 796.2 799 56.9
Nn1g07560 Nelumbo nucifera HOM05D006371 ORTHO05D008309 5.1e-228 795.0 800 54.9
CsaV3_2G010080 Cucumis sativus L. HOM05D006371 ORTHO05D008309 2.2e-226 789.6 814 56.0
THA.LOC104808834 Tarenaya hassleriana HOM05D006371 ORTHO05D008309 2.9e-223 779.2 777 55.5
Aa31sc575G10 Aethionema arabicum HOM05D006371 ORTHO05D008309 3.6e-221 772.3 794 54.9
Sp3g23150 Schrenkiella parvula HOM05D006371 ORTHO05D008309 1.0e-220 770.8 795 54.1
AL3G41970 Arabidopsis lyrata HOM05D006371 ORTHO05D008309 1.1e-219 767.3 763 55.2
CARHR102110 Cardamine hirsuta HOM05D006371 ORTHO05D008309 2.5e-219 766.1 795 53.8
Thhalv10002385m.g Eutrema salsugineum HOM05D006371 ORTHO05D008309 5.3e-217 758.4 800 52.8
BcaB06g26772 Brassica carinata HOM05D006371 ORTHO05D008309 8.5e-215 751.1 747 55.0
Carub.0003s2599 Capsella rubella HOM05D006371 ORTHO05D008309 1.9e-214 750.0 793 52.6
PSO541G0072 Papaver somniferum HOM05D006371 ORTHO05D008309 1.6e-213 746.9 800 53.2
BcaC06g35860 Brassica carinata HOM05D006371 ORTHO05D008309 2.6e-211 739.6 768 54.0
PSO675G4792 Papaver somniferum HOM05D006371 ORTHO05D008309 3.3e-211 739.2 801 53.8
BraA07t28469Z Brassica rapa HOM05D006371 ORTHO05D008309 4.4e-211 738.8 749 54.9
BolC7t41483H Brassica oleracea HOM05D006371 ORTHO05D008309 3.7e-210 735.7 783 53.8
C07p10340 Brassica napus HOM05D006371 ORTHO05D008309 4.8e-210 735.3 769 53.8
A07p06760 Brassica napus HOM05D006371 ORTHO05D008309 6.3e-210 734.9 749 54.5
Aqoxy3G02224 Aquilegia oxysepala HOM05D006371 ORTHO05D008309 5.3e-209 731.9 753 54.3
Atru.chr6.3429 Acer truncatum HOM05D006371 ORTHO05D008309 7.2e-206 721.5 690 57.0
COL.COLO4_19652 Corchorus olitorius HOM05D006371 ORTHO05D008309 2.7e-205 719.5 715 56.6
Haze_12588 Corylus avellana HOM05D006371 ORTHO05D008309 4.7e-205 718.8 673 57.2
Dinv08538 Davidia involucrata HOM05D006371 ORTHO05D008309 1.2e-197 694.1 724 55.9
CSS0032100 Camellia sinensis var. sinensis HOM05D006371 ORTHO05D008309 4.4e-195 685.6 709 55.9
HPP92_003032 Vanilla planifolia HOM05D006371 ORTHO05D008309 1.1e-193 681.0 769 51.4
Actinidia02362 Actinidia chinensis HOM05D006371 ORTHO05D008309 2.9e-191 672.9 790 50.4
CDE02G2282 Ceratophyllum demersum HOM05D006371 ORTHO05D008309 1.2e-189 667.5 777 49.2
ATR0751G221 Amborella trichopoda HOM05D006371 ORTHO05D008309 6.8e-188 661.8 860 46.7
Dinv40160 Davidia involucrata HOM05D006371 ORTHO05D008309 2.0e-187 660.2 765 51.9
Sed0018275 Sechium edule HOM05D006371 ORTHO05D008309 2.8e-186 656.4 560 64.3
Lj4C228G6 Lonicera japonica HOM05D006371 ORTHO05D008309 4.4e-179 632.5 821 48.6
Os08g0323600 Oryza sativa ssp. japonica HOM05D006371 ORTHO05D008309 4.4e-179 632.5 826 46.4
Cc07_g11500 Coffea canephora HOM05D006371 ORTHO05D008309 8.6e-175 618.2 784 50.0
Migut.D00896 Erythranthe guttata HOM05D006371 ORTHO05D008309 1.0e-172 611.3 667 54.9
AT2G04270 Arabidopsis thaliana HOM05D006371 ORTHO05D008309 4.9e-170 602.4 529 62.8
ECA232G0409 Erigeron canadensis HOM05D006371 ORTHO05D008309 7.8e-168 595.1 709 50.8
Ah.02g129050 Amaranthus hybridus HOM05D006371 ORTHO05D008309 1.0e-167 594.7 581 59.0
Hma1.2p1_0315F.1_g122770 Hydrangea macrophylla HOM05D006371 ORTHO05D008309 3.3e-166 589.7 729 49.1
EL10Ac6g13348 Beta vulgaris HOM05D006371 ORTHO05D008309 9.5e-166 588.2 789 47.4
Sc07g0001260 Simmondsia chinensis HOM05D006371 ORTHO05D008309 1.6e-165 587.4 756 48.9
AUR62039632 Chenopodium quinoa HOM05D006371 ORTHO05D008309 1.4e-164 584.3 661 53.0
AUR62040011 Chenopodium quinoa HOM05D006371 ORTHO05D008309 9.8e-163 578.2 586 57.2
MSTRG.10896 Avicennia marina HOM05D006371 ORTHO05D008309 2.9e-162 576.6 554 59.4
HanXRQChr09g0256951 Helianthus annuus HOM05D006371 ORTHO05D008309 8.3e-162 575.1 710 49.6
SalBow7G3887 Salvia bowleyana HOM05D006371 ORTHO05D008309 1.9e-161 573.9 580 57.8
Solyc02g083140.3 Solanum lycopersicum HOM05D006371 ORTHO05D008309 5.6e-158 562.4 670 51.9
PGSC0003DMG400001545 Solanum tuberosum HOM05D006371 ORTHO05D008309 1.6e-157 560.8 680 51.5
Sopen02g027900 Solanum pennellii HOM05D006371 ORTHO05D008309 2.8e-157 560.1 646 53.4
ECA238G3451 Erigeron canadensis HOM05D006371 ORTHO05D008309 4.7e-157 559.3 701 49.2
DCAR_023137 Daucus carota HOM05D006371 ORTHO05D008309 1.5e-155 554.3 639 53.1
CAN.G890.8 Capsicum annuum HOM05D006371 ORTHO05D008309 1.7e-154 550.8 541 58.4
SGA_v2.0_scaffold68G22808 Striga asiatica HOM05D006371 ORTHO05D008309 4.9e-154 549.3 734 47.3
Lsat_1_v5_gn_4_142580 Lactuca sativa HOM05D006371 ORTHO05D008309 4.6e-152 542.7 588 53.2
Nitab4.5_0023804g0010 Nicotiana tabacum HOM05D006371 ORTHO05D008309 1.0e-151 541.6 631 51.8
Nitab4.5_0005413g0050 Nicotiana tabacum HOM05D006371 ORTHO05D008309 2.5e-150 537.0 624 51.4
Peaxi162Scf00300g00515 Petunia axillaris HOM05D006371 ORTHO05D008309 2.9e-146 523.5 732 46.7
Zm00001eb038720 Zea mays HOM05D006371 ORTHO05D008309 8.4e-146 521.9 552 54.0
Cpa.g.sc136.51 Carica papaya HOM05D006371 ORTHO05D008309 1.0e-143 515.0 370 73.0
Hund03659 Selenicereus undatus HOM05D006371 ORTHO05D008309 2.1e-141 507.3 571 53.1
vmacro20507 Vaccinium macrocarpon HOM05D006371 ORTHO05D008309 2.8e-133 480.3 784 43.1
Oeu049652.2 Olea europaea HOM05D006371 ORTHO05D008309 5.8e-131 472.6 831 41.3
Mapoly0111s0056 Marchantia polymorpha HOM05D006371 ORTHO05D008309 3.7e-125 453.4 744 39.4
Rhsim10G0203500 Rhododendron simsii HOM05D006371 ORTHO05D008309 1.1e-124 451.8 918 37.6
unitig_748.g7080 Utricularia gibba HOM05D006371 ORTHO05D005825 9.0e-124 448.7 493 54.8
Hund03661 Selenicereus undatus HOM05D006371 ORTHO05D008309 7.6e-115 419.1 595 48.7
AagrBONN_evm.TU.Sc2ySwM_368.983 Anthoceros agrestis HOM05D006371 ORTHO05D008309 9.0e-108 395.6 740 37.0
Pp3c4_14910 Physcomitrium patens HOM05D006371 ORTHO05D008309 2.6e-107 394.0 552 43.1
SMO117G0275 Selaginella moellendorffii HOM05D006371 ORTHO05D008309 2.5e-102 377.5 469 46.7
SEGI_21719 Sequoiadendron giganteum HOM05D006371 ORTHO05D008309 1.1e-65 255.8 217 61.8
AUR62026198 Chenopodium quinoa HOM05D006371 ORTHO05D008309 4.6e-59 233.8 222 57.2
MD17G1105600 Malus domestica HOM05D006371 ORTHO05D008309 4.7e-48 197.2 197 59.9
Ca_28887_v3 Cicer arietinum L. HOM05D006371 ORTHO05D008309 4.7e-40 170.6 278 37.1
MCO12G287 Micromonas commoda HOM05D006371 ORTHO05D008309 1.7e-34 152.1 281 34.9
SEGI_30134 Sequoiadendron giganteum HOM05D006371 ORTHO05D008309 2.6e-30 138.3 540 29.1
Haze_12589 Corylus avellana HOM05D006371 ORTHO05D008309 3.4e-22 111.3 132 50.8
CBR_g28919 Chara braunii HOM05D006371 ORTHO05D000048 4.4e-22 110.9 123 49.6
CSS0035540 Camellia sinensis var. sinensis HOM05D006371 ORTHO05D008309 2.0e-14 85.5 86 48.8
CBR_g28922 Chara braunii HOM05D000019 ORTHO05D000048 3.4e-14 84.7 271 29.5
FAN09G2267 Fragaria x ananassa HOM05D006371 ORTHO05D008309 4.9e-13 80.9 66 50.0
AUR62026199 Chenopodium quinoa HOM05D000691 ORTHO05D000378 6.4e-13 80.5 70 61.4


User provided reference genes

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