Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.007G247000 Phaseolus vulgaris HOM05D006779 ORTHO05D008491 8.2e-132 473.8 248 100.0
Glyma.01G146900 Glycine max HOM05D006779 ORTHO05D008491 6.3e-108 394.4 248 85.1
Glyma.10G112900 Glycine max HOM05D006779 ORTHO05D008491 6.3e-108 394.4 248 85.1
Glyma.02G159500 Glycine max HOM05D006779 ORTHO05D008491 3.2e-104 382.1 248 83.5
Lalb_Chr09g0328181 Lupinus albus HOM05D006779 ORTHO05D008491 2.3e-94 349.4 249 77.5
arahy.Tifrunner.gnm1.ann1.8ZG09Z Arachis hypogaea HOM05D006779 ORTHO05D008491 3.0e-94 349.0 251 77.7
arahy.Tifrunner.gnm1.ann1.T066AP Arachis hypogaea HOM05D006779 ORTHO05D008491 2.0e-90 336.3 250 74.4
Ca_18655_v3 Cicer arietinum L. HOM05D006779 ORTHO05D008491 4.3e-88 328.6 249 73.9
Psat7g121840 Pisum sativum HOM05D006779 ORTHO05D008491 5.6e-88 328.2 252 72.2
arahy.Tifrunner.gnm1.ann1.QJKD6Y Arachis hypogaea HOM05D006779 ORTHO05D008491 9.8e-85 317.4 250 72.0
Lj4g0006122 Lotus japonicus HOM05D006779 ORTHO05D008491 3.6e-79 298.9 248 71.0
Haze_01903 Corylus avellana HOM05D006779 ORTHO05D008491 9.2e-75 284.3 249 66.3
QL11p037315 Quercus lobata HOM05D006779 ORTHO05D008491 9.2e-75 284.3 249 63.1
CsaV3_7G008730 Cucumis sativus L. HOM05D006779 ORTHO05D008491 1.2e-74 283.9 254 65.0
Sed0011670 Sechium edule HOM05D006779 ORTHO05D008491 3.5e-74 282.3 254 64.2
FAN20G2937 Fragaria x ananassa HOM05D006779 ORTHO05D008491 6.0e-74 281.6 252 64.3
FAN15G3147 Fragaria x ananassa HOM05D006779 ORTHO05D008491 1.3e-73 280.4 252 63.9
Medtr4g086640 Medicago truncatula HOM05D006779 ORTHO05D008491 3.0e-73 279.3 251 66.1
Potri.009G105500 Populus trichocarpa HOM05D006779 ORTHO05D008491 6.6e-73 278.1 248 63.3
FvH4_2g06680 Fragaria vesca HOM05D006779 ORTHO05D008491 1.1e-72 277.3 252 63.5
CiPaw.05G054000 Carya illinoinensis HOM05D006779 ORTHO05D008491 1.9e-72 276.6 252 63.1
FAN24G0787 Fragaria x ananassa HOM05D006779 ORTHO05D008491 1.9e-72 276.6 252 63.5
Sabra09G0080600 Salix brachista HOM05D006779 ORTHO05D008491 2.5e-72 276.2 248 62.1
RcHm_v2.0_Chr6g0258731 Rosa chinensis HOM05D006779 ORTHO05D008491 3.3e-72 275.8 252 62.3
CSS0011815 Camellia sinensis var. sinensis HOM05D000591 ORTHO05D000579 9.5e-72 274.2 255 61.2
GSVIVG01031784001 Vitis vinifera HOM05D006779 ORTHO05D008491 1.2e-71 273.9 254 62.6
Dinv23582 Davidia involucrata HOM05D006779 ORTHO05D008491 1.8e-70 270.0 260 60.4
Actinidia00459 Actinidia chinensis HOM05D006779 ORTHO05D008491 8.9e-70 267.7 256 59.4
Manes.15G142500 Manihot esculenta HOM05D006779 ORTHO05D008491 1.3e-68 263.8 250 60.8
Rhsim11G0168500 Rhododendron simsii HOM05D006779 ORTHO05D008491 2.9e-68 262.7 288 55.6
Thecc.02G097400 Theobroma cacao HOM05D006779 ORTHO05D008491 2.9e-68 262.7 249 63.5
Prupe.8G119200 Prunus persica HOM05D006779 ORTHO05D008491 3.7e-68 262.3 250 61.6
MD05G1075500 Malus domestica HOM05D006779 ORTHO05D008491 2.4e-67 259.6 250 62.4
vmacro02181 Vaccinium macrocarpon HOM05D006779 ORTHO05D008491 9.2e-67 257.7 292 54.5
Eucgr.I01169 Eucalyptus grandis HOM05D006779 ORTHO05D008491 4.6e-66 255.4 254 60.2
PGR142G0644 Punica granatum HOM05D006779 ORTHO05D008491 3.9e-65 252.3 253 60.1
TWI79G0004 Tripterygium wilfordii HOM05D006779 ORTHO05D008491 3.9e-65 252.3 252 60.3
Ciclev10029963m.g Citrus clementina HOM05D006779 ORTHO05D008491 1.5e-64 250.4 252 61.5
Dinv42131 Davidia involucrata HOM05D006779 ORTHO05D008491 2.5e-64 249.6 259 58.3
Cc02_g18560 Coffea canephora HOM05D006779 ORTHO05D008491 1.1e-62 244.2 265 56.2
ClCG02G005780 Citrullus lanatus HOM05D006779 ORTHO05D008491 1.4e-62 243.8 296 52.4
Sc18g0004890 Simmondsia chinensis HOM05D006779 ORTHO05D008491 3.1e-62 242.7 250 58.4
TWI31G0027 Tripterygium wilfordii HOM05D006779 ORTHO05D008491 3.1e-62 242.7 252 58.7
Gohir.A03G191700 Gossypium hirsutum HOM05D006779 ORTHO05D008491 1.2e-61 240.7 248 59.7
Atru.chr5.2773 Acer truncatum HOM05D006779 ORTHO05D008491 2.6e-61 239.6 251 60.2
Nn5g30192 Nelumbo nucifera HOM05D006779 ORTHO05D008491 3.4e-61 239.2 259 57.1
PGSC0003DMG400025811 Solanum tuberosum HOM05D006779 ORTHO05D008491 3.4e-61 239.2 261 54.8
Gorai.005G240600 Gossypium raimondii HOM05D006779 ORTHO05D008491 4.4e-61 238.8 248 59.7
Gohir.D02G212600 Gossypium hirsutum HOM05D006779 ORTHO05D008491 5.8e-61 238.4 248 59.7
COL.COLO4_32686 Corchorus olitorius HOM05D006779 ORTHO05D008491 1.3e-60 237.3 247 59.9
Nitab4.5_0004334g0110 Nicotiana tabacum HOM05D006779 ORTHO05D008491 1.3e-60 237.3 261 54.4
Oeu064516.1 Olea europaea HOM05D006779 ORTHO05D008491 1.3e-60 237.3 266 55.6
MSTRG.16763 Avicennia marina HOM05D006779 ORTHO05D008491 1.7e-60 236.9 249 57.4
Solyc01g108430.3 Solanum lycopersicum HOM05D006779 ORTHO05D008491 1.7e-60 236.9 261 54.0
Sopen01g050660 Solanum pennellii HOM05D006779 ORTHO05D008491 1.7e-60 236.9 261 54.0
Aqoxy6G01411 Aquilegia oxysepala HOM05D006779 ORTHO05D008491 2.9e-60 236.1 266 53.4
CANSAT25G0176 Cannabis sativa HOM05D006779 ORTHO05D008491 8.4e-60 234.6 248 56.0
CAN.G322.16 Capsicum annuum HOM05D006779 ORTHO05D008491 1.1e-59 234.2 245 56.7
SGA_v2.0_scaffold90G27688 Striga asiatica HOM05D006779 ORTHO05D008491 1.6e-58 230.3 265 54.0
SGA_v2.0_scaffold90G27693 Striga asiatica HOM05D006779 ORTHO05D008491 1.6e-58 230.3 262 54.6
Lj5C207T4 Lonicera japonica HOM05D006779 ORTHO05D008491 2.1e-58 229.9 260 54.2
MBI02_g21199_MAGBIO Magnolia biondii HOM05D006779 ORTHO05D008491 2.1e-58 229.9 273 53.1
Nitab4.5_0005583g0020 Nicotiana tabacum HOM05D006779 ORTHO05D008491 7.8e-58 228.0 261 52.5
unitig_60.g25783 Utricularia gibba HOM05D006779 ORTHO05D008491 6.6e-57 224.9 255 54.5
SalBow6G0615 Salvia bowleyana HOM05D006779 ORTHO05D008491 8.7e-57 224.6 257 53.3
Aa31LG10G4420 Aethionema arabicum HOM05D006779 ORTHO05D008491 4.3e-56 222.2 252 53.2
DCAR_029018 Daucus carota HOM05D000144 ORTHO05D003364 4.3e-56 222.2 260 55.4
Migut.B00314 Erythranthe guttata HOM05D006779 ORTHO05D008491 4.3e-56 222.2 262 53.1
HPP92_004257 Vanilla planifolia HOM05D006779 ORTHO05D008491 2.1e-55 219.9 259 53.3
HanXRQChr10g0303251 Helianthus annuus HOM05D006779 ORTHO05D008491 2.8e-55 219.5 246 54.9
Sp1g36470 Schrenkiella parvula HOM05D006779 ORTHO05D008491 1.4e-54 217.2 253 52.2
Thhalv10011741m.g Eutrema salsugineum HOM05D006779 ORTHO05D008491 2.4e-54 216.5 253 51.8
EL10Ac3g06870 Beta vulgaris HOM05D006779 ORTHO05D008491 4.0e-54 215.7 248 52.8
Lsat_1_v5_gn_5_113321 Lactuca sativa HOM05D006779 ORTHO05D008491 6.9e-54 214.9 254 50.8
ECA234G4762 Erigeron canadensis HOM05D006779 ORTHO05D008491 1.7e-52 210.3 249 50.6
Peaxi162Scf00016g01637 Petunia axillaris HOM05D006779 ORTHO05D008491 1.7e-52 210.3 249 52.6
AUR62034187 Chenopodium quinoa HOM05D006779 ORTHO05D008491 2.9e-52 209.5 247 51.4
Ah.04g152710 Amaranthus hybridus HOM05D006779 ORTHO05D008491 4.6e-50 202.2 241 51.0
PSO541G4058 Papaver somniferum HOM05D006779 ORTHO05D008491 4.6e-50 202.2 261 52.9
AT1G49590 Arabidopsis thaliana HOM05D006779 ORTHO05D008491 7.8e-50 201.4 253 49.8
A06p03540 Brassica napus HOM05D006779 ORTHO05D008491 7.8e-50 201.4 254 49.2
PSO675G5018 Papaver somniferum HOM05D006779 ORTHO05D008491 1.1e-48 197.6 261 52.1
AUR62022456 Chenopodium quinoa HOM05D006779 ORTHO05D008491 3.3e-48 196.1 287 44.9
BraA06t23562Z Brassica rapa HOM05D006779 ORTHO05D008491 1.3e-47 194.1 252 48.4
Hund00325 Selenicereus undatus HOM05D006779 ORTHO05D008491 2.1e-47 193.4 248 48.4
BolC6t35591H Brassica oleracea HOM05D006779 ORTHO05D008491 2.8e-47 193.0 251 47.8
BcaNung06359 Brassica carinata HOM05D006779 ORTHO05D008491 3.6e-47 192.6 255 47.5
Carub.0001s3879 Capsella rubella HOM05D006779 ORTHO05D008491 1.1e-46 191.0 253 49.0
MELO3C018438.2 Cucumis melo HOM05D006779 ORTHO05D008491 3.1e-46 189.5 208 58.7
SHI05379 Sapria himalayana HOM05D006779 ORTHO05D008491 2.6e-45 186.4 251 49.0
AL1G56960 Arabidopsis lyrata HOM05D006779 ORTHO05D008491 1.4e-43 180.6 269 46.1
CDE06G1966 Ceratophyllum demersum HOM05D006779 ORTHO05D008491 2.4e-43 179.9 243 49.8
Mapoly0157s0003 Marchantia polymorpha HOM05D006779 ORTHO05D008491 2.8e-39 166.4 299 41.5
ATR0097G032 Amborella trichopoda HOM05D006779 ORTHO05D008491 1.1e-38 164.5 236 47.9
TPR.G23531 Trifolium pratense HOM05D006779 ORTHO05D008491 5.3e-38 162.2 153 60.8
Zm00001eb373090 Zea mays HOM05D006779 ORTHO05D008491 1.3e-36 157.5 250 44.0
FAN20G1913 Fragaria x ananassa HOM05D006779 ORTHO05D008491 1.6e-34 150.6 149 59.1
TAR628G0388 Trochodendron aralioides HOM05D006779 ORTHO05D008491 2.3e-33 146.7 89 82.0
AagrBONN_evm.TU.Sc2ySwM_344.4302 Anthoceros agrestis HOM05D006779 ORTHO05D008491 7.4e-32 141.7 286 37.4
Cpa.g.sc62.36 Carica papaya HOM05D006779 ORTHO05D008491 1.1e-30 137.9 89 76.4
Pp3c14_26080 Physcomitrium patens HOM05D006779 ORTHO05D008491 3.1e-30 136.3 294 36.4
C06p04620 Brassica napus HOM05D006779 ORTHO05D008491 1.7e-28 130.6 208 45.2
TPR.G23511 Trifolium pratense HOM05D006779 ORTHO05D008491 2.7e-26 123.2 70 85.7
HPP92_004235 Vanilla planifolia HOM05D006779 ORTHO05D008491 3.5e-26 122.9 213 46.0
CSS0024784 Camellia sinensis var. sinensis HOM05D006779 ORTHO05D008491 4.6e-26 122.5 186 45.2
SMO367G0139 Selaginella moellendorffii HOM05D006779 ORTHO05D008491 5.1e-25 119.0 273 35.2
Os06g0215200 Oryza sativa ssp. japonica HOM05D006779 ORTHO05D008491 1.1e-24 117.9 70 78.6
CBR_g17671 Chara braunii HOM05D006779 ORTHO05D008491 1.5e-24 117.5 334 32.9
CSS0021002 Camellia sinensis var. sinensis HOM05D006779 ORTHO05D008491 5.7e-24 115.5 186 43.5
CARHR039640 Cardamine hirsuta HOM05D006779 ORTHO05D008491 1.1e-19 101.3 154 44.2
CSS0022737 Camellia sinensis var. sinensis HOM05D006779 ORTHO05D008491 1.0e-17 94.7 184 41.3
CSS0005405 Camellia sinensis var. sinensis HOM05D006779 ORTHO05D008491 1.5e-16 90.9 148 42.6
CSS0011003 Camellia sinensis var. sinensis HOM05D006779 ORTHO05D008491 1.5e-16 90.9 148 42.6
AUR62042088 Chenopodium quinoa HOM05D006779 ORTHO05D008491 2.5e-16 90.1 199 37.7
CDE03G0027 Ceratophyllum demersum HOM05D006779 ORTHO05D008491 2.8e-15 86.7 243 35.0
CSS0034996 Camellia sinensis var. sinensis HOM05D006779 ORTHO05D008491 1.7e-12 77.4 186 36.0
Ah.08g219340 Amaranthus hybridus HOM05D006779 ORTHO05D008491 7.0e-06 55.5 92 43.5
EL10Ac9g20940 Beta vulgaris HOM05D002686 ORTHO05D003222 9.1e-06 55.1 61 55.7


User provided reference genes

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