Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.005G174900 Phaseolus vulgaris HOM05D005526 ORTHO05D006802 3.9e-238 827.8 428 100.0
Glyma.15G010400 Glycine max HOM05D005526 ORTHO05D006802 6.9e-211 737.3 438 87.7
Glyma.13G363400 Glycine max HOM05D005526 ORTHO05D006802 9.0e-211 736.9 438 87.4
VMungo1080G0636 Vigna mungo HOM05D005526 ORTHO05D006802 1.1e-208 729.9 420 87.4
Lj3g0017842 Lotus japonicus HOM05D005526 ORTHO05D006802 8.2e-188 660.6 439 80.2
Ca_01085_v3 Cicer arietinum L. HOM05D005526 ORTHO05D006802 2.4e-187 659.1 439 80.4
Medtr2g103110 Medicago truncatula HOM05D005526 ORTHO05D006802 1.6e-180 636.3 444 77.3
arahy.Tifrunner.gnm1.ann1.FYL3MV Arachis hypogaea HOM05D005526 ORTHO05D006802 2.5e-176 622.5 441 77.1
Dinv38097 Davidia involucrata HOM05D005526 ORTHO05D006802 6.3e-172 607.8 438 74.4
Cfa002011 Carpinus fangiana HOM05D005526 ORTHO05D006802 4.5e-170 601.7 437 73.7
Atru.chr1.3093 Acer truncatum HOM05D005526 ORTHO05D006802 1.6e-167 593.2 438 73.1
Actinidia08810 Actinidia chinensis HOM05D005526 ORTHO05D006802 5.1e-166 588.2 438 72.4
Duzib235G1092 Durio zibethinus HOM05D005526 ORTHO05D006802 6.7e-166 587.8 437 72.3
CSS0037293 Camellia sinensis var. sinensis HOM05D005526 ORTHO05D006802 8.8e-166 587.4 438 72.4
Thecc.06G073100 Theobroma cacao HOM05D005526 ORTHO05D006802 3.3e-165 585.5 437 72.3
TAR383G0281 Trochodendron aralioides HOM05D005526 ORTHO05D006802 1.3e-164 583.6 438 71.7
Manes.04G116500 Manihot esculenta HOM05D005526 ORTHO05D006802 1.7e-164 583.2 438 71.7
TWI18G0833 Tripterygium wilfordii HOM05D005526 ORTHO05D006802 1.1e-163 580.5 440 71.6
CiPaw.01G244400 Carya illinoinensis HOM05D005526 ORTHO05D006802 1.8e-163 579.7 437 70.7
CsaV3_4G001390 Cucumis sativus L. HOM05D005526 ORTHO05D006802 1.8e-163 579.7 437 71.2
Gohir.D06G117200 Gossypium hirsutum HOM05D005526 ORTHO05D006802 1.8e-163 579.7 437 71.6
Ciclev10025661m.g Citrus clementina HOM05D005526 ORTHO05D006802 3.1e-163 578.9 439 72.2
Gorai.010G134800 Gossypium raimondii HOM05D005526 ORTHO05D006802 5.3e-163 578.2 437 71.4
TWI75G1755 Tripterygium wilfordii HOM05D005526 ORTHO05D006802 1.2e-162 577.0 440 71.8
FAN02G2127 Fragaria x ananassa HOM05D005526 ORTHO05D006802 5.0e-161 571.6 437 71.2
Prupe.3G079900 Prunus persica HOM05D005526 ORTHO05D006802 5.0e-161 571.6 449 69.7
MD09G1221000 Malus domestica HOM05D005526 ORTHO05D006802 6.5e-161 571.2 438 71.0
Gohir.A06G112600 Gossypium hirsutum HOM05D005526 ORTHO05D006802 1.1e-160 570.5 437 70.7
FvH4_6g30340 Fragaria vesca HOM05D005526 ORTHO05D006802 1.9e-160 569.7 437 70.5
Sed0002477 Sechium edule HOM05D005526 ORTHO05D006802 3.6e-159 565.5 437 69.3
Potri.001G172800 Populus trichocarpa HOM05D005526 ORTHO05D006802 3.0e-158 562.4 440 69.3
Eucgr.J03045 Eucalyptus grandis HOM05D005526 ORTHO05D006802 1.3e-156 557.0 438 68.9
Nn2g11952 Nelumbo nucifera HOM05D005526 ORTHO05D006802 1.3e-156 557.0 438 68.9
CANSAT56G0953 Cannabis sativa HOM05D005526 ORTHO05D006802 5.3e-155 551.6 436 69.5
MBI01_g11875_MAGBIO Magnolia biondii HOM05D005526 ORTHO05D006802 1.2e-154 550.4 437 68.0
ECA234G2940 Erigeron canadensis HOM05D005526 ORTHO05D006802 1.0e-153 547.4 429 69.2
Cpa.g.sc336.8 Carica papaya HOM05D005526 ORTHO05D006802 2.5e-152 542.7 443 66.8
PGR031G1627 Punica granatum HOM05D005526 ORTHO05D006802 2.5e-152 542.7 448 67.2
MSTRG.9436 Avicennia marina HOM05D005526 ORTHO05D006802 7.2e-152 541.2 432 69.7
DCAR_025483 Daucus carota HOM05D005526 ORTHO05D006802 8.0e-151 537.7 437 68.2
Aqoxy7G02084 Aquilegia oxysepala HOM05D005526 ORTHO05D006802 6.7e-150 534.6 437 68.0
QL05p027824 Quercus lobata HOM05D005526 ORTHO05D006802 6.7e-150 534.6 524 59.5
arahy.Tifrunner.gnm1.ann1.IMA97E Arachis hypogaea HOM05D005526 ORTHO05D006802 1.2e-149 533.9 462 67.5
Rhsim12G0193000 Rhododendron simsii HOM05D005526 ORTHO05D006802 7.5e-149 531.2 540 58.3
Hund06580 Selenicereus undatus HOM05D005526 ORTHO05D006802 9.7e-149 530.8 431 66.6
MD17G1204400 Malus domestica HOM05D005526 ORTHO05D006802 1.2e-146 523.9 519 59.3
Sc10g0005720 Simmondsia chinensis HOM05D005526 ORTHO05D006802 7.7e-146 521.2 426 66.4
SalBow2G2365 Salvia bowleyana HOM05D005526 ORTHO05D006802 2.2e-145 519.6 432 67.1
Lalb_Chr14g0373681 Lupinus albus HOM05D005526 ORTHO05D006802 3.8e-145 518.8 360 78.6
Solyc06g067990.3 Solanum lycopersicum HOM05D005526 ORTHO05D006802 3.8e-145 518.8 433 68.4
THA.LOC104812497 Tarenaya hassleriana HOM05D005526 ORTHO05D006802 5.0e-145 518.5 426 66.4
vmacro16915 Vaccinium macrocarpon HOM05D005526 ORTHO05D006802 1.1e-144 517.3 560 55.7
AUR62016379 Chenopodium quinoa HOM05D005526 ORTHO05D006802 4.2e-144 515.4 431 65.4
PSO170G3249 Papaver somniferum HOM05D005526 ORTHO05D006802 8.0e-143 511.1 437 62.5
Dinv30571 Davidia involucrata HOM05D005526 ORTHO05D006802 2.3e-142 509.6 360 74.7
Migut.D01055 Erythranthe guttata HOM05D005526 ORTHO05D006802 1.2e-141 507.3 444 64.4
Psat5g300440 Pisum sativum HOM05D005526 ORTHO05D006802 9.8e-141 504.2 358 75.4
Sp5g35600 Schrenkiella parvula HOM05D005526 ORTHO05D006802 1.7e-140 503.4 406 65.3
EL10Ac9g21940 Beta vulgaris HOM05D005526 ORTHO05D006802 2.8e-140 502.7 427 65.1
FAN09G0405 Fragaria x ananassa HOM05D005526 ORTHO05D006802 2.4e-139 499.6 437 65.7
Thhalv10018648m.g Eutrema salsugineum HOM05D005526 ORTHO05D006802 2.7e-138 496.1 408 65.9
CARHR074270 Cardamine hirsuta HOM05D005526 ORTHO05D006802 2.9e-137 492.7 402 64.9
SGA_v2.0_scaffold16G07615 Striga asiatica HOM05D005526 ORTHO05D006802 8.6e-137 491.1 427 64.6
ClCG07G012810 Citrullus lanatus HOM05D005526 ORTHO05D006802 5.5e-136 488.4 440 63.6
BcaB02g07290 Brassica carinata HOM05D005526 ORTHO05D006802 2.3e-134 483.0 422 61.8
AT3G06820 Arabidopsis thaliana HOM05D005526 ORTHO05D006802 3.0e-134 482.6 391 66.5
TPR.G37284 Trifolium pratense HOM05D005526 ORTHO05D006802 6.8e-134 481.5 364 72.5
A07p26570 Brassica napus HOM05D005526 ORTHO05D006802 9.8e-133 477.6 411 63.0
AT1G80210 Arabidopsis thaliana HOM05D005526 ORTHO05D006802 1.3e-132 477.2 369 67.5
BcaC08g45297 Brassica carinata HOM05D005526 ORTHO05D006802 3.7e-132 475.7 415 62.2
C06p28990 Brassica napus HOM05D005526 ORTHO05D006802 6.3e-132 474.9 416 62.3
BolC6t38065H Brassica oleracea HOM05D005526 ORTHO05D006802 2.4e-131 473.0 418 61.7
Lsat_1_v5_gn_5_132520 Lactuca sativa HOM05D005526 ORTHO05D006802 1.6e-127 460.3 428 62.4
CiPaw.02G154800 Carya illinoinensis HOM05D005526 ORTHO05D006802 8.9e-126 454.5 323 74.6
GSVIVG01017251001 Vitis vinifera HOM05D005526 ORTHO05D006802 2.0e-125 453.4 358 68.7
RcHm_v2.0_Chr2g0136621 Rosa chinensis HOM05D005526 ORTHO05D006802 9.8e-125 451.1 358 67.9
Peaxi162Scf00207g00731 Petunia axillaris HOM05D005526 ORTHO05D006802 3.2e-123 446.0 437 59.0
MELO3C017901.2 Cucumis melo HOM05D005526 ORTHO05D006802 3.5e-122 442.6 357 67.8
BraA07t30300Z Brassica rapa HOM05D005526 ORTHO05D006802 2.3e-121 439.9 397 60.2
Oeu052283.1 Olea europaea HOM05D005526 ORTHO05D006802 2.3e-121 439.9 444 60.6
CSS0003126 Camellia sinensis var. sinensis HOM05D005526 ORTHO05D006802 5.0e-121 438.7 360 68.3
AUR62011560 Chenopodium quinoa HOM05D005526 ORTHO05D006802 6.6e-121 438.3 431 59.4
Os05g0542600 Oryza sativa ssp. japonica HOM05D005526 ORTHO05D006802 1.1e-120 437.6 434 55.8
Lj5C68G25 Lonicera japonica HOM05D005526 ORTHO05D006802 1.5e-120 437.2 360 67.2
COL.COLO4_12896 Corchorus olitorius HOM05D005526 ORTHO05D006802 4.7e-119 432.2 361 65.1
Aa31LG4G500 Aethionema arabicum HOM05D005526 ORTHO05D006802 8.0e-119 431.4 406 59.4
CDE02G1452 Ceratophyllum demersum HOM05D005526 ORTHO05D006802 1.2e-117 427.6 430 57.2
Nitab4.5_0000620g0060 Nicotiana tabacum HOM05D005526 ORTHO05D006802 3.4e-117 426.0 432 59.7
SEGI_35764 Sequoiadendron giganteum HOM05D005526 ORTHO05D006802 9.8e-117 424.5 442 53.4
Nitab4.5_0013710g0010 Nicotiana tabacum HOM05D005526 ORTHO05D006802 1.7e-116 423.7 439 60.1
Zm00001eb294490 Zea mays HOM05D005526 ORTHO05D006802 1.4e-115 420.6 438 54.6
CAN.G395.46 Capsicum annuum HOM05D005526 ORTHO05D006802 6.6e-113 411.8 352 67.3
HanXRQChr10g0303071 Helianthus annuus HOM05D005526 ORTHO05D006802 2.8e-111 406.4 354 64.1
unitig_899.g14780 Utricularia gibba HOM05D005526 ORTHO05D006802 4.4e-109 399.1 405 57.0
Sopen06g025270 Solanum pennellii HOM05D005526 ORTHO05D006802 5.8e-109 398.7 353 65.4
Cc04_g04020 Coffea canephora HOM05D005526 ORTHO05D006802 2.2e-108 396.7 355 63.7
Oeu063802.2 Olea europaea HOM05D005526 ORTHO05D006802 3.7e-108 396.0 348 66.4
Ah.01g020810 Amaranthus hybridus HOM05D005526 ORTHO05D006802 1.1e-107 394.4 434 56.0
AL3G17940 Arabidopsis lyrata HOM05D005526 ORTHO05D006802 6.4e-100 368.6 326 60.7
AL2G41300 Arabidopsis lyrata HOM05D005526 ORTHO05D006802 3.5e-98 362.8 320 61.2
Pp3c27_4740 Physcomitrium patens HOM05D005526 ORTHO05D006802 7.8e-98 361.7 389 51.2
Carub.0002s2731 Capsella rubella HOM05D005526 ORTHO05D006802 1.6e-95 354.0 322 59.9
Mapoly0053s0043 Marchantia polymorpha HOM05D005526 ORTHO05D006802 3.6e-95 352.8 424 50.2
SGA_v2.0_scaffold37G14789 Striga asiatica HOM05D005526 ORTHO05D006802 1.2e-93 347.8 397 54.2
CBR_g46861 Chara braunii HOM05D005526 ORTHO05D006802 3.0e-89 333.2 436 46.1
CDE01G0292 Ceratophyllum demersum HOM05D005526 ORTHO05D006802 3.9e-89 332.8 429 48.5
ATR1156G007 Amborella trichopoda HOM05D005526 ORTHO05D006802 4.3e-88 329.3 352 56.2
HPP92_009843 Vanilla planifolia HOM05D005526 ORTHO05D006802 1.9e-80 303.9 364 50.0
Oeu014842.2 Olea europaea HOM05D005526 ORTHO05D006802 1.8e-78 297.4 319 55.8
Haze_16513 Corylus avellana HOM05D005526 ORTHO05D006802 1.2e-69 268.1 222 67.1
FAN14G4362 Fragaria x ananassa HOM05D005526 ORTHO05D006802 2.5e-67 260.4 301 55.1
Zm00001eb342510 Zea mays HOM05D005526 ORTHO05D006802 4.3e-64 249.6 202 65.3
Haze_16512 Corylus avellana HOM05D005526 ORTHO05D006802 1.3e-63 248.1 231 60.6
SMO196G0028 Selaginella moellendorffii HOM05D005526 ORTHO05D006802 2.7e-50 203.8 290 41.4
AagrBONN_evm.TU.Sc2ySwM_368.2431 Anthoceros agrestis HOM05D005526 ORTHO05D006802 3.7e-47 193.4 339 41.0
Cre11.g475400 Chlamydomonas reinhardtii HOM05D005526 ORTHO05D006802 2.4e-38 164.1 386 31.6
Sed0012845 Sechium edule HOM05D005526 ORTHO05D006802 3.8e-36 156.8 321 38.6
TPR.G37278 Trifolium pratense HOM05D005526 ORTHO05D006802 8.8e-33 145.6 79 91.1
Lalb_Chr14g0373671 Lupinus albus HOM05D005526 ORTHO05D006802 9.8e-32 142.1 79 87.3
Lj5A68T70 Lonicera japonica HOM05D005526 ORTHO05D006802 5.4e-30 136.3 79 84.8
FAN05G1558 Fragaria x ananassa HOM05D005526 ORTHO05D006802 7.0e-30 136.0 79 84.8
Sabra01G0138900 Salix brachista HOM05D005526 ORTHO05D006802 9.1e-30 135.6 79 83.5
CSS0009710 Camellia sinensis var. sinensis HOM05D005526 ORTHO05D006802 2.0e-29 134.4 79 83.5
RcHm_v2.0_Chr2g0136631 Rosa chinensis HOM05D005526 ORTHO05D006802 3.5e-29 133.7 79 83.5
GSVIVG01017250001 Vitis vinifera HOM05D005526 ORTHO05D006802 2.9e-28 130.6 72 87.5
Cc04_g04010 Coffea canephora HOM05D005526 ORTHO05D006802 3.8e-28 130.2 79 83.5
HanXRQChr10g0303081 Helianthus annuus HOM05D005526 ORTHO05D006802 3.8e-28 130.2 79 83.5
ATR1156G076 Amborella trichopoda HOM05D005526 ORTHO05D006802 8.5e-28 129.0 79 83.5
Sopen06g025280 Solanum pennellii HOM05D005526 ORTHO05D006802 1.1e-27 128.6 79 81.0
PGSC0003DMG401028513 Solanum tuberosum HOM05D005526 ORTHO05D006802 1.1e-27 128.6 79 81.0
AagrBONN_evm.TU.Sc2ySwM_368.2432 Anthoceros agrestis HOM05D005526 ORTHO05D006802 3.0e-25 120.6 79 70.9
SalBow8G0881 Salvia bowleyana HOM05D005526 ORTHO05D006802 4.0e-17 93.6 97 57.7
Gohir.A10G140700 Gossypium hirsutum HOM05D000009 ORTHO05D000008 7.0e-14 82.8 54 77.8
Pp3c25_2940 Physcomitrium patens HOM05D005526 ORTHO05D311957 3.6e-10 70.5 90 45.6
CAN.G395.47 Capsicum annuum HOM05D005526 ORTHO05D006802 2.3e-09 67.8 44 75.0
Pp3c6_24500 Physcomitrium patens HOM05D005526 ORTHO05D006802 2.3e-09 67.8 72 50.0
COL.COLO4_12895 Corchorus olitorius HOM05D005526 ORTHO05D006802 3.2e-06 57.4 30 83.3


User provided reference genes

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