Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.005G150500 Phaseolus vulgaris HOM05D004763 ORTHO05D007492 0.0e+00 1320.1 673 100.0
Glyma.13G342900 Glycine max HOM05D004763 ORTHO05D007492 0.0e+00 1254.6 674 94.7
VMungo1080G1755 Vigna mungo HOM05D004763 ORTHO05D007492 0.0e+00 1231.1 644 96.9
Medtr2g098510 Medicago truncatula HOM05D004763 ORTHO05D007492 0.0e+00 1196.4 669 90.9
arahy.Tifrunner.gnm1.ann1.GN3GFY Arachis hypogaea HOM05D004763 ORTHO05D007492 0.0e+00 1191.8 671 90.3
arahy.Tifrunner.gnm1.ann1.P0K6XU Arachis hypogaea HOM05D004763 ORTHO05D007492 0.0e+00 1189.5 669 90.3
arahy.Tifrunner.gnm1.ann1.VYK1P0 Arachis hypogaea HOM05D004763 ORTHO05D007492 0.0e+00 1188.7 671 90.2
Lalb_Chr14g0372291 Lupinus albus HOM05D004763 ORTHO05D007492 0.0e+00 1183.7 670 90.1
Psat5g288480 Pisum sativum HOM05D004763 ORTHO05D007492 0.0e+00 1179.5 671 89.0
Lj3g0020649 Lotus japonicus HOM05D004763 ORTHO05D007492 0.0e+00 1176.4 671 89.3
TPR.G18851 Trifolium pratense HOM05D004763 ORTHO05D007492 0.0e+00 1165.2 661 89.4
arahy.Tifrunner.gnm1.ann1.X75IXN Arachis hypogaea HOM05D004763 ORTHO05D007492 0.0e+00 1164.8 709 84.9
Manes.14G014500 Manihot esculenta HOM05D004763 ORTHO05D007492 0.0e+00 1146.7 671 85.8
Dinv36304 Davidia involucrata HOM05D004763 ORTHO05D007492 0.0e+00 1143.6 671 86.1
QL01p006243 Quercus lobata HOM05D004763 ORTHO05D007492 0.0e+00 1142.5 672 85.9
TWI34G0672 Tripterygium wilfordii HOM05D004763 ORTHO05D007492 0.0e+00 1140.9 671 86.0
GSVIVG01025336001 Vitis vinifera HOM05D004763 ORTHO05D007492 0.0e+00 1139.4 671 85.8
CiPaw.14G125100 Carya illinoinensis HOM05D004763 ORTHO05D007492 0.0e+00 1137.9 669 85.8
CSS0044360 Camellia sinensis var. sinensis HOM05D004763 ORTHO05D007492 0.0e+00 1134.8 670 85.5
Potri.003G211000 Populus trichocarpa HOM05D004763 ORTHO05D007492 0.0e+00 1133.6 668 85.9
Hund22081 Selenicereus undatus HOM05D004763 ORTHO05D007492 0.0e+00 1133.6 671 85.5
Thecc.09G223100 Theobroma cacao HOM05D004763 ORTHO05D007492 0.0e+00 1132.9 670 85.5
TAR623G1126 Trochodendron aralioides HOM05D004763 ORTHO05D007492 0.0e+00 1130.9 669 84.8
Gorai.013G250000 Gossypium raimondii HOM05D004763 ORTHO05D007492 0.0e+00 1130.2 668 84.9
MELO3C014639.2 Cucumis melo HOM05D004763 ORTHO05D007492 0.0e+00 1128.6 668 85.5
Gohir.D13G219100 Gossypium hirsutum HOM05D004763 ORTHO05D007492 0.0e+00 1127.1 668 84.6
Gohir.A13G215400 Gossypium hirsutum HOM05D004763 ORTHO05D007492 0.0e+00 1126.7 668 84.6
Sc09g0000480 Simmondsia chinensis HOM05D004763 ORTHO05D007492 0.0e+00 1126.3 672 84.1
CsaV3_4G023800 Cucumis sativus L. HOM05D004763 ORTHO05D007492 0.0e+00 1122.8 668 85.2
Hma1.2p1_1169F.1_g263300 Hydrangea macrophylla HOM05D004763 ORTHO05D007492 0.0e+00 1122.8 669 84.6
Cc01_g04070 Coffea canephora HOM05D004763 ORTHO05D007492 0.0e+00 1117.4 671 82.7
Cpa.g.sc84.111 Carica papaya HOM05D004763 ORTHO05D007492 0.0e+00 1115.5 700 81.7
CANSAT54G1729 Cannabis sativa HOM05D004763 ORTHO05D007492 0.0e+00 1113.6 677 85.2
Haze_23044 Corylus avellana HOM05D004763 ORTHO05D007492 0.0e+00 1113.2 672 84.5
Sed0013957 Sechium edule HOM05D004763 ORTHO05D007492 0.0e+00 1111.7 668 84.3
Nn7g36058 Nelumbo nucifera HOM05D004763 ORTHO05D007492 0.0e+00 1109.7 672 83.9
AUR62019250 Chenopodium quinoa HOM05D004763 ORTHO05D007492 0.0e+00 1107.0 671 83.5
THA.LOC104816912 Tarenaya hassleriana HOM05D004763 ORTHO05D007492 0.0e+00 1107.0 664 84.2
HanXRQChr14g0451781 Helianthus annuus HOM05D004763 ORTHO05D007492 0.0e+00 1105.1 671 82.7
PSO339G3791 Papaver somniferum HOM05D004763 ORTHO05D007492 0.0e+00 1104.0 675 83.6
Ciclev10014511m.g Citrus clementina HOM05D004763 ORTHO05D007492 0.0e+00 1102.0 663 84.8
Eucgr.B03662 Eucalyptus grandis HOM05D004763 ORTHO05D007492 0.0e+00 1100.5 671 82.3
Prupe.6G018600 Prunus persica HOM05D004763 ORTHO05D007492 0.0e+00 1094.7 688 81.7
Sabra03G0153800 Salix brachista HOM05D004763 ORTHO05D007492 0.0e+00 1093.2 647 85.2
Sabra03G0156000 Salix brachista HOM05D004763 ORTHO05D007492 0.0e+00 1093.2 647 85.2
Aqoxy1G00185 Aquilegia oxysepala HOM05D004763 ORTHO05D007492 0.0e+00 1092.4 670 82.8
EL10Ac4g10318 Beta vulgaris HOM05D004763 ORTHO05D007492 0.0e+00 1092.4 661 83.1
Sopen01g009200 Solanum pennellii HOM05D004763 ORTHO05D007492 0.0e+00 1091.6 671 81.5
ECA238G4453 Erigeron canadensis HOM05D004763 ORTHO05D007492 0.0e+00 1090.5 677 81.4
Solyc01g014490.4 Solanum lycopersicum HOM05D004763 ORTHO05D007492 0.0e+00 1089.7 671 81.4
AL3G34700 Arabidopsis lyrata HOM05D004763 ORTHO05D007492 0.0e+00 1089.3 661 83.1
Carub.0003s2074 Capsella rubella HOM05D004763 ORTHO05D007492 0.0e+00 1087.8 661 82.9
FvH4_3g43550 Fragaria vesca HOM05D004763 ORTHO05D007492 0.0e+00 1087.0 662 82.5
COL.COLO4_09893 Corchorus olitorius HOM05D004763 ORTHO05D007492 0.0e+00 1085.5 664 82.5
RcHm_v2.0_Chr5g0078101 Rosa chinensis HOM05D004763 ORTHO05D007492 0.0e+00 1085.1 662 82.5
AT3G20780 Arabidopsis thaliana HOM05D004763 ORTHO05D007492 0.0e+00 1084.7 662 82.6
BcaC05g28282 Brassica carinata HOM05D004763 ORTHO05D007492 0.0e+00 1083.9 665 82.1
C05p43300 Brassica napus HOM05D004763 ORTHO05D007492 0.0e+00 1083.2 665 82.0
Sp3g18800 Schrenkiella parvula HOM05D004763 ORTHO05D007492 0.0e+00 1080.5 666 81.8
Peaxi162Scf00773g00119 Petunia axillaris HOM05D004763 ORTHO05D007492 0.0e+00 1077.0 679 80.3
MD03G1021100 Malus domestica HOM05D004763 ORTHO05D007492 0.0e+00 1075.8 677 81.4
PGR102G0325 Punica granatum HOM05D004763 ORTHO05D007492 0.0e+00 1075.8 671 82.3
Thhalv10020214m.g Eutrema salsugineum HOM05D004763 ORTHO05D007492 0.0e+00 1075.5 666 81.5
FAN16G3272 Fragaria x ananassa HOM05D004763 ORTHO05D007492 0.0e+00 1075.1 672 81.0
BcaB06g26148 Brassica carinata HOM05D004763 ORTHO05D007492 4.6e-312 1074.3 670 81.3
A05p28000 Brassica napus HOM05D004763 ORTHO05D007492 4.6e-312 1073.5 679 80.7
Duzib150G1218 Durio zibethinus HOM05D004763 ORTHO05D007492 1.7e-309 1065.4 691 79.5
Nitab4.5_0006575g0020 Nicotiana tabacum HOM05D004763 ORTHO05D007492 6.6e-309 1063.5 693 78.8
BraA05t21683Z Brassica rapa HOM05D004763 ORTHO05D007492 1.9e-308 1062.0 687 79.5
Migut.D00558 Erythranthe guttata HOM05D004763 ORTHO05D007492 1.6e-307 1058.9 673 79.5
BolC5t33062H Brassica oleracea HOM05D004763 ORTHO05D007492 3.1e-306 1054.7 696 77.9
Nitab4.5_0003069g0050 Nicotiana tabacum HOM05D004763 ORTHO05D007492 1.5e-305 1052.4 680 79.6
HPP92_020536 Vanilla planifolia HOM05D004763 ORTHO05D007492 4.9e-304 1047.3 663 78.7
ATR0605G091 Amborella trichopoda HOM05D004763 ORTHO05D007492 1.7e-301 1038.9 667 79.5
Os09g0279600 Oryza sativa ssp. japonica HOM05D004763 ORTHO05D007492 1.7e-301 1038.9 646 79.7
SGA_v2.0_scaffold1G00797 Striga asiatica HOM05D004763 ORTHO05D007492 2.5e-300 1035.0 725 74.9
Rhsim01G0189300 Rhododendron simsii HOM05D004763 ORTHO05D007492 2.6e-297 1025.0 755 72.8
CDE04G0998 Ceratophyllum demersum HOM05D004763 ORTHO05D007492 2.2e-296 1021.9 641 80.0
Ca_01270_v3 Cicer arietinum L. HOM05D004763 ORTHO05D007492 1.9e-295 1018.8 597 87.6
Lsat_1_v5_gn_2_101121 Lactuca sativa HOM05D004763 ORTHO05D007492 7.0e-295 1016.9 692 75.9
Actinidia39377 Actinidia chinensis HOM05D004763 ORTHO05D007492 6.2e-291 1003.8 672 77.5
Aa31LG8G7590 Aethionema arabicum HOM05D004763 ORTHO05D007492 3.1e-290 1001.5 644 79.7
Lj4g0010878 Lotus japonicus HOM05D004763 ORTHO05D007492 6.6e-285 983.8 671 77.9
Ah.04g161760 Amaranthus hybridus HOM05D004763 ORTHO05D007492 2.1e-278 962.2 669 75.3
Pp3c22_12720 Physcomitrium patens HOM05D004763 ORTHO05D007492 2.1e-275 952.2 666 71.8
AagrBONN_evm.TU.Sc2ySwM_344.3405 Anthoceros agrestis HOM05D004763 ORTHO05D007492 5.3e-274 947.6 645 72.4
DCAR_024396 Daucus carota HOM05D004763 ORTHO05D007492 7.6e-273 943.7 674 73.7
CARHR096610 Cardamine hirsuta HOM05D004763 ORTHO05D007492 1.1e-271 939.9 590 80.7
Atru.chr3.2503 Acer truncatum HOM05D004763 ORTHO05D007492 9.3e-271 936.8 582 80.4
SMO116G0144 Selaginella moellendorffii HOM05D004763 ORTHO05D007492 1.8e-266 922.5 652 72.2
Mapoly0042s0060 Marchantia polymorpha HOM05D004763 ORTHO05D007492 4.2e-263 911.4 667 69.0
Aqoxy381s001 Aquilegia oxysepala HOM05D004763 ORTHO05D007492 2.4e-258 895.6 654 73.2
FAN21G2003 Fragaria x ananassa HOM05D004763 ORTHO05D007492 3.1e-258 895.2 635 73.9
CBR_g31022 Chara braunii HOM05D004763 ORTHO05D007492 4.5e-257 891.3 661 67.5
Hma1.2p1_1169F.1_g263310 Hydrangea macrophylla HOM05D004763 ORTHO05D007492 5.1e-253 877.9 509 84.9
FAN11G2145 Fragaria x ananassa HOM05D004763 ORTHO05D007492 2.2e-248 862.4 699 66.5
FAN11G0713 Fragaria x ananassa HOM05D004763 ORTHO05D007492 3.3e-244 848.6 699 65.8
Potri.T085401 Populus trichocarpa HOM05D004763 ORTHO05D007492 1.4e-229 800.0 443 89.6
Zm00001eb308780 Zea mays HOM05D004763 ORTHO05D007492 4.0e-213 745.3 462 78.6
Cre01.g019750 Chlamydomonas reinhardtii HOM05D004763 ORTHO05D007492 2.9e-200 702.6 669 55.0
Lsat_1_v5_gn_1_127001 Lactuca sativa HOM05D004763 ORTHO05D007492 2.0e-180 636.7 535 63.0
MBI01_g15753_MAGBIO Magnolia biondii HOM05D004763 ORTHO05D007492 2.4e-178 629.8 365 87.1
ClCG02G023620 Citrullus lanatus HOM05D004763 ORTHO05D007492 1.6e-177 627.1 371 86.8
SEGI_32015 Sequoiadendron giganteum HOM05D004763 ORTHO05D007492 1.7e-176 623.6 382 79.6
MCO09G243 Micromonas commoda HOM05D004763 ORTHO05D007492 6.6e-176 621.7 637 52.9
PRCOL_00005940 Prasinoderma coloniale HOM05D004763 ORTHO05D007492 2.4e-170 603.2 635 51.7
CAN.G646.1 Capsicum annuum HOM05D004763 ORTHO05D007492 1.6e-169 600.5 377 80.4
PGSC0003DMG401029907 Solanum tuberosum HOM05D004763 ORTHO05D007492 1.3e-168 597.4 384 79.4
Lju1319A4T15 Lonicera japonica HOM05D004763 ORTHO05D007492 1.9e-143 513.8 306 83.7
Lj1A366T12 Lonicera japonica HOM05D004763 ORTHO05D007492 4.8e-142 509.2 367 73.0
Lsat_1_v5_gn_1_127121 Lactuca sativa HOM05D004763 ORTHO05D007492 1.3e-139 501.1 630 49.4
CAN.G442.1 Capsicum annuum HOM05D004763 ORTHO05D007492 1.9e-135 487.3 308 79.5
PGSC0003DMG402029907 Solanum tuberosum HOM05D004763 ORTHO05D007492 4.3e-135 486.1 307 79.8
Lj1C366G5 Lonicera japonica HOM05D004763 ORTHO05D007492 2.5e-114 417.2 297 73.1
Lsat_1_v5_gn_1_126981 Lactuca sativa HOM05D004763 ORTHO05D007492 1.4e-109 401.4 474 50.2
Actinidia06319 Actinidia chinensis HOM05D004763 ORTHO05D007492 6.1e-81 306.2 216 73.6
SEGI_39045 Sequoiadendron giganteum HOM05D004763 ORTHO05D007492 6.8e-80 302.8 217 71.0
Eucgr.B03660 Eucalyptus grandis HOM05D004763 ORTHO05D007492 8.6e-67 259.2 177 74.6
TPR.G29743 Trifolium pratense HOM05D004763 ORTHO05D007492 4.4e-63 246.9 218 65.1
Lju1319C4G3 Lonicera japonica HOM05D004763 ORTHO05D014896 5.2e-56 223.4 234 58.5
TPR.G29742 Trifolium pratense HOM05D004763 ORTHO05D007492 3.8e-54 217.2 247 52.6
Oeu036968.1 Olea europaea HOM05D004763 ORTHO05D007492 1.1e-50 205.7 104 89.4
Lsat_1_v5_gn_1_126941 Lactuca sativa HOM05D004763 ORTHO05D007492 7.3e-50 203.0 221 50.7
Lsat_1_v5_gn_1_127201 Lactuca sativa HOM05D004763 ORTHO05D007492 3.8e-38 164.1 401 32.7
Lsat_1_v5_gn_1_127161 Lactuca sativa HOM05D004763 ORTHO05D007492 3.5e-36 157.5 154 57.1
MBI09_g40619_MAGBIO Magnolia biondii HOM05D004763 ORTHO05D019264 3.9e-35 154.1 87 83.9
MBI04_g09599_MAGBIO Magnolia biondii HOM05D000103 ORTHO05D019264 5.1e-35 153.7 87 83.9
MBI02_g24793_MAGBIO Magnolia biondii HOM05D000103 ORTHO05D019264 4.3e-34 150.6 87 82.8
Ca_01269_v3 Cicer arietinum L. HOM05D000073 ORTHO05D000033 2.1e-33 148.3 111 74.8
Aa31LG8G7550 Aethionema arabicum HOM05D004763 ORTHO05D007492 1.8e-32 145.2 466 33.3
Thecc.03G073800 Theobroma cacao HOM05D004763 ORTHO05D019264 3.1e-32 144.4 106 68.9
PGSC0003DMG400012096 Solanum tuberosum HOM05D004763 ORTHO05D014896 3.0e-27 127.9 86 75.6
PGSC0003DMG401017076 Solanum tuberosum HOM05D004763 ORTHO05D026177 5.8e-23 113.6 114 51.8
arahy.Tifrunner.gnm1.ann1.50I1V9 Arachis hypogaea HOM05D004763 ORTHO05D014896 4.2e-21 107.5 68 83.8
arahy.Tifrunner.gnm1.ann1.F7UR4V Arachis hypogaea HOM05D004763 ORTHO05D014896 4.2e-21 107.5 68 83.8
arahy.Tifrunner.gnm1.ann1.G1IAFF Arachis hypogaea HOM05D004763 ORTHO05D014896 7.1e-21 106.7 82 72.0
Lju1319A4T14 Lonicera japonica HOM05D004763 ORTHO05D019264 1.9e-18 98.6 54 85.2
Lsat_1_v5_gn_3_118680 Lactuca sativa HOM05D004763 ORTHO05D007492 1.3e-17 95.9 55 85.5
PGSC0003DMG400026817 Solanum tuberosum HOM05D004763 ORTHO05D026177 8.2e-17 93.2 82 65.9
Sopen04g015550 Solanum pennellii HOM05D000004 ORTHO05D000002 1.8e-16 92.0 96 58.3
arahy.Tifrunner.gnm1.ann1.65KXHR Arachis hypogaea HOM05D004763 ORTHO05D014896 2.0e-15 88.6 49 91.8
Lsat_1_v5_gn_1_125620 Lactuca sativa HOM05D004763 ORTHO05D007492 2.6e-15 88.2 201 33.8
TWI60G1170 Tripterygium wilfordii HOM05D004763 ORTHO05D014896 7.6e-15 86.7 49 89.8
arahy.Tifrunner.gnm1.ann1.YT3XVJ Arachis hypogaea HOM05D012186 ORTHO05D009594 1.7e-14 85.5 94 59.6
Lsat_1_v5_gn_1_126960 Lactuca sativa HOM05D004763 ORTHO05D012314 1.6e-12 79.0 68 52.9
Solyc11g028310.3 Solanum lycopersicum HOM05D004763 ORTHO05D026177 1.3e-11 75.9 63 68.3
TPR.G18832 Trifolium pratense HOM05D006024 ORTHO05D007505 5.1e-11 73.9 44 79.5
Aa31LG8G7540 Aethionema arabicum HOM05D004763 ORTHO05D007492 2.5e-10 71.6 67 56.7
PGSC0003DMG400019106 Solanum tuberosum HOM05D004763 ORTHO05D007492 7.4e-10 70.1 37 86.5
Solyc12g036030.1 Solanum lycopersicum HOM05D004763 ORTHO05D026177 4.8e-09 67.4 105 42.9
Solyc11g028340.3 Solanum lycopersicum HOM05D004763 ORTHO05D019264 2.0e-07 62.0 43 60.5
Lsat_1_v5_gn_8_146221 Lactuca sativa HOM05D004763 ORTHO05D014896 3.8e-06 57.8 33 84.8
arahy.Tifrunner.gnm1.ann1.NZV0HQ Arachis hypogaea HOM05D004763 ORTHO05D014896 5.0e-06 57.4 33 90.9
RcHm_v2.0_Chr3g0472751 Rosa chinensis HOM05D004763 ORTHO05D344474 5.0e-06 57.4 38 78.9


User provided reference genes

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