Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.005G035400 Phaseolus vulgaris HOM05D004820 ORTHO05D005946 1.5e-202 709.5 412 100.0
VMungo1383G2933 Vigna mungo HOM05D004820 ORTHO05D005946 1.1e-194 683.3 412 93.7
Glyma.03G155000 Glycine max HOM05D004820 ORTHO05D005946 1.3e-185 653.3 414 89.4
Glyma.19G157200 Glycine max HOM05D004820 ORTHO05D005946 2.9e-182 642.1 411 88.1
TPR.G9917 Trifolium pratense HOM05D004820 ORTHO05D005946 3.2e-173 612.1 413 84.3
Lj4g0024215 Lotus japonicus HOM05D004820 ORTHO05D005946 2.6e-167 592.4 412 80.8
Lalb_Chr06g0162971 Lupinus albus HOM05D004820 ORTHO05D005946 7.6e-167 590.9 414 85.7
Manes.01G206900 Manihot esculenta HOM05D004820 ORTHO05D005946 7.6e-167 590.9 415 81.9
Ca_08606_v3 Cicer arietinum L. HOM05D004820 ORTHO05D005946 1.0e-166 590.5 413 82.6
arahy.Tifrunner.gnm1.ann1.HALK3W Arachis hypogaea HOM05D004820 ORTHO05D005946 3.8e-166 588.6 437 75.1
CiPaw.08G106000 Carya illinoinensis HOM05D004820 ORTHO05D005946 6.5e-166 587.8 417 81.1
arahy.Tifrunner.gnm1.ann1.JHLY8X Arachis hypogaea HOM05D004820 ORTHO05D005946 8.4e-166 587.4 437 74.8
Gohir.D08G204400 Gossypium hirsutum HOM05D004820 ORTHO05D005946 1.1e-165 587.0 418 84.0
arahy.Tifrunner.gnm1.ann1.NQ54M2 Arachis hypogaea HOM05D004820 ORTHO05D005946 1.9e-165 586.3 437 75.1
Medtr7g095000 Medicago truncatula HOM05D004820 ORTHO05D005946 1.9e-165 586.3 413 81.8
Gohir.A08G186300 Gossypium hirsutum HOM05D004820 ORTHO05D005946 4.2e-165 585.1 418 83.7
Gorai.004G216400 Gossypium raimondii HOM05D004820 ORTHO05D005946 5.5e-165 584.7 418 83.7
Thecc.01G277300 Theobroma cacao HOM05D004820 ORTHO05D005946 1.0e-163 580.5 418 81.8
Cpa.g.sc52.45 Carica papaya HOM05D004820 ORTHO05D005946 1.3e-163 580.1 422 80.8
CsaV3_7G028060 Cucumis sativus L. HOM05D004820 ORTHO05D005946 5.1e-163 578.2 421 80.3
arahy.Tifrunner.gnm1.ann1.X2D3U2 Arachis hypogaea HOM05D004820 ORTHO05D005946 8.7e-163 577.4 427 76.8
Gohir.D08G075000 Gossypium hirsutum HOM05D004820 ORTHO05D005946 1.1e-162 577.0 421 74.8
Psat3g064000 Pisum sativum HOM05D004820 ORTHO05D005946 5.7e-162 574.7 413 81.4
MELO3C015826.2 Cucumis melo HOM05D004820 ORTHO05D005946 1.3e-161 573.5 426 78.9
Ciclev10020348m.g Citrus clementina HOM05D004820 ORTHO05D005946 4.8e-161 571.6 418 81.6
Gorai.004G079300 Gossypium raimondii HOM05D004820 ORTHO05D005946 6.3e-161 571.2 423 76.4
Duzib138G0452 Durio zibethinus HOM05D004820 ORTHO05D005946 1.1e-160 570.5 419 80.0
TAR362G1079 Trochodendron aralioides HOM05D004820 ORTHO05D005946 5.3e-160 568.2 419 76.4
Atru.chr5.1456 Acer truncatum HOM05D004820 ORTHO05D005946 1.2e-159 567.0 421 78.1
Eucgr.K03365 Eucalyptus grandis HOM05D004820 ORTHO05D005946 3.4e-159 565.5 416 77.9
CANSAT25G3765 Cannabis sativa HOM05D004820 ORTHO05D005946 4.5e-159 565.1 419 77.3
Nn4g26288 Nelumbo nucifera HOM05D004820 ORTHO05D005946 4.5e-159 565.1 423 76.6
QL12p021397 Quercus lobata HOM05D004820 ORTHO05D005946 1.0e-158 563.9 414 78.3
TWI14G0518 Tripterygium wilfordii HOM05D004820 ORTHO05D005946 1.3e-158 563.5 412 75.0
Gohir.A08G066300 Gossypium hirsutum HOM05D004820 ORTHO05D005946 2.9e-158 562.4 422 78.0
Potri.005G210600 Populus trichocarpa HOM05D004820 ORTHO05D005946 3.8e-158 562.0 420 78.6
MD11G1284100 Malus domestica HOM05D004820 ORTHO05D005946 7.2e-157 557.8 416 76.9
Duzib211G0468 Durio zibethinus HOM05D004820 ORTHO05D005946 3.6e-156 555.4 418 78.7
SGA_v2.0_scaffold81G26015 Striga asiatica HOM05D004820 ORTHO05D005946 1.8e-155 553.1 424 70.8
PGR044G0684 Punica granatum HOM05D004820 ORTHO05D005946 3.0e-155 552.4 417 77.7
Sed0001544 Sechium edule HOM05D004820 ORTHO05D005946 3.0e-155 552.4 422 79.4
Sabra05G0160800 Salix brachista HOM05D004820 ORTHO05D005946 1.1e-154 550.4 426 76.8
Migut.N02046 Erythranthe guttata HOM05D004820 ORTHO05D005946 4.3e-154 548.5 419 70.6
Solyc09g065280.4 Solanum lycopersicum HOM05D004820 ORTHO05D005946 5.7e-154 548.1 414 72.0
CAN.G590.6 Capsicum annuum HOM05D004820 ORTHO05D005946 9.7e-154 547.4 415 72.0
Cc03_g10020 Coffea canephora HOM05D004820 ORTHO05D005946 5.3e-152 541.6 413 73.4
Oeu041704.1 Olea europaea HOM05D004820 ORTHO05D005946 5.3e-152 541.6 421 75.1
THA.LOC104801242 Tarenaya hassleriana HOM05D004820 ORTHO05D005946 1.3e-150 537.0 420 73.3
THA.LOC104815940 Tarenaya hassleriana HOM05D004820 ORTHO05D005946 1.1e-149 533.9 419 73.5
MD03G1263300 Malus domestica HOM05D004820 ORTHO05D005946 3.2e-149 532.3 416 73.8
AL1G12610 Arabidopsis lyrata HOM05D004820 ORTHO05D005946 4.2e-149 531.9 422 72.7
Actinidia00769 Actinidia chinensis HOM05D004820 ORTHO05D005946 7.2e-149 531.2 424 74.1
Sopen09g027030 Solanum pennellii HOM05D004820 ORTHO05D005946 1.2e-148 530.4 414 71.5
MSTRG.17449 Avicennia marina HOM05D004820 ORTHO05D005946 2.7e-148 529.3 415 76.6
PGSC0003DMG400019362 Solanum tuberosum HOM05D004820 ORTHO05D005946 6.1e-148 528.1 414 69.3
Sc05g0005630 Simmondsia chinensis HOM05D004820 ORTHO05D005946 3.9e-147 525.4 418 68.7
Aa31LG1G9390 Aethionema arabicum HOM05D004820 ORTHO05D005946 8.8e-147 524.2 426 72.5
HPP92_018354 Vanilla planifolia HOM05D004820 ORTHO05D005946 1.1e-146 523.9 423 71.9
PSO761G0350 Papaver somniferum HOM05D004820 ORTHO05D005946 4.4e-146 521.9 409 70.2
PSO210G1690 Papaver somniferum HOM05D004820 ORTHO05D005946 5.3e-144 515.0 411 71.0
Lsat_1_v5_gn_5_187781 Lactuca sativa HOM05D004820 ORTHO05D005946 2.2e-142 509.6 398 73.1
A09p68340 Brassica napus HOM05D004820 ORTHO05D005946 5.0e-142 508.4 417 66.7
CSS0006431 Camellia sinensis var. sinensis HOM05D004820 ORTHO05D005946 5.0e-142 508.4 396 74.5
Prupe.8G239700 Prunus persica HOM05D004820 ORTHO05D005946 9.4e-141 504.2 417 71.9
EL10Ac8g18597 Beta vulgaris HOM05D004820 ORTHO05D005946 4.0e-139 498.8 412 64.6
AUR62027118 Chenopodium quinoa HOM05D004820 ORTHO05D005946 3.3e-138 495.7 413 63.9
BcaC07g42265 Brassica carinata HOM05D004820 ORTHO05D005946 5.7e-138 495.0 393 68.7
Carub.0001s0228 Capsella rubella HOM05D004820 ORTHO05D005946 6.3e-137 491.5 330 76.7
CARHR002470 Cardamine hirsuta HOM05D004820 ORTHO05D005946 1.4e-136 490.3 330 76.4
C08p52910 Brassica napus HOM05D004820 ORTHO05D005946 5.9e-135 485.0 414 64.5
FvH4_2g23380 Fragaria vesca HOM05D004820 ORTHO05D005946 5.9e-135 485.0 419 68.3
HanXRQChr01g0003021 Helianthus annuus HOM05D004820 ORTHO05D005946 7.7e-135 484.6 396 73.0
QL03p020183 Quercus lobata HOM05D004820 ORTHO05D005946 7.7e-135 484.6 382 77.2
FAN20G0972 Fragaria x ananassa HOM05D004820 ORTHO05D005946 1.3e-134 483.8 419 67.5
AUR62012894 Chenopodium quinoa HOM05D004820 ORTHO05D005946 8.5e-134 481.1 414 62.8
Thhalv10009621m.g Eutrema salsugineum HOM05D004820 ORTHO05D005946 3.2e-133 479.2 325 76.0
AT1G03140 Arabidopsis thaliana HOM05D004820 ORTHO05D005946 5.5e-133 478.4 322 76.4
Ah.01g024010 Amaranthus hybridus HOM05D004820 ORTHO05D005946 1.2e-132 477.2 409 63.8
A08p37470 Brassica napus HOM05D004820 ORTHO05D005946 1.2e-132 477.2 331 78.9
BraA08t35645Z Brassica rapa HOM05D004820 ORTHO05D005946 1.2e-132 477.2 331 78.9
BolC8t46841H Brassica oleracea HOM05D004820 ORTHO05D005946 2.1e-132 476.5 331 78.5
BolC8t52807H Brassica oleracea HOM05D004820 ORTHO05D005946 2.1e-132 476.5 415 64.1
RcHm_v2.0_Chr6g0290841 Rosa chinensis HOM05D004820 ORTHO05D005946 2.7e-132 476.1 424 66.3
FAN24G1940 Fragaria x ananassa HOM05D004820 ORTHO05D005946 4.7e-132 475.3 437 65.7
FAN15G1635 Fragaria x ananassa HOM05D004820 ORTHO05D005946 8.0e-132 474.6 419 67.1
SEGI_11361 Sequoiadendron giganteum HOM05D004820 ORTHO05D005946 2.3e-131 473.0 405 63.7
C08p00420 Brassica napus HOM05D004820 ORTHO05D005946 3.0e-131 472.6 331 77.9
FAN27G0992 Fragaria x ananassa HOM05D004820 ORTHO05D005946 3.4e-130 469.2 428 65.4
Mapoly0140s0012 Marchantia polymorpha HOM05D004820 ORTHO05D005946 7.5e-130 468.0 416 60.1
Zm00001eb324990 Zea mays HOM05D004820 ORTHO05D005946 1.4e-128 463.8 443 64.8
AL1G45340 Arabidopsis lyrata HOM05D004820 ORTHO05D005946 4.1e-128 462.2 413 64.2
ECA248G2754 Erigeron canadensis HOM05D004820 ORTHO05D005946 4.1e-128 462.2 417 64.3
Sp1g02160 Schrenkiella parvula HOM05D004820 ORTHO05D005946 5.4e-128 461.8 424 66.5
Lj4g0011679 Lotus japonicus HOM05D004820 ORTHO05D005946 7.0e-128 461.5 396 65.4
Zm00001eb426860 Zea mays HOM05D004820 ORTHO05D005946 3.8e-126 455.7 421 62.5
Pp3c21_19780 Physcomitrium patens HOM05D004820 ORTHO05D005946 3.2e-125 452.6 412 60.4
Zm00001eb426810 Zea mays HOM05D004820 ORTHO05D005946 2.1e-124 449.9 419 61.6
Zm00001eb426820 Zea mays HOM05D004820 ORTHO05D005946 6.1e-124 448.4 419 61.8
Os07g0571900 Oryza sativa ssp. japonica HOM05D004820 ORTHO05D005946 2.3e-123 446.4 440 63.2
Zm00001eb426800 Zea mays HOM05D004820 ORTHO05D005946 5.2e-123 445.3 408 62.5
Zm00001eb426850 Zea mays HOM05D004820 ORTHO05D005946 1.6e-119 433.7 401 61.8
SMO356G0463 Selaginella moellendorffii HOM05D004820 ORTHO05D005946 3.2e-112 409.5 407 55.5
PGSC0003DMG400010602 Solanum tuberosum HOM05D004820 ORTHO05D005946 3.1e-107 392.9 410 56.3
SpUn0083_0020 Schrenkiella parvula HOM05D004820 ORTHO05D005946 4.0e-107 392.5 371 58.2
Lalb_Chr02g0142711 Lupinus albus HOM05D004820 ORTHO05D005946 9.8e-106 387.9 220 88.6
Sp5g11480 Schrenkiella parvula HOM05D004820 ORTHO05D005946 1.3e-105 387.5 371 57.4
Rhsim01G0274100 Rhododendron simsii HOM05D004820 ORTHO05D005946 2.3e-102 376.7 429 56.2
COL.COLO4_09079 Corchorus olitorius HOM05D004820 ORTHO05D005946 5.0e-102 375.6 451 56.5
Zm00001eb216840 Zea mays HOM05D004820 ORTHO05D005946 3.1e-99 366.3 413 56.2
PGSC0003DMG400010600 Solanum tuberosum HOM05D004820 ORTHO05D005946 8.9e-99 364.8 411 54.5
CBR_g23335 Chara braunii HOM05D004820 ORTHO05D005946 6.6e-94 348.6 441 53.7
AT1G54590 Arabidopsis thaliana HOM05D004820 ORTHO05D005946 2.3e-91 340.1 290 64.5
Solyc07g052190.1 Solanum lycopersicum HOM05D004820 ORTHO05D005946 9.9e-82 308.1 366 51.6
Oeu028072.3 Olea europaea HOM05D004820 ORTHO05D005946 9.3e-80 301.6 281 68.0
SHI31236 Sapria himalayana HOM05D004820 ORTHO05D005946 3.0e-78 296.6 275 60.0
GSVIVG01001158001 Vitis vinifera HOM05D004820 ORTHO05D005946 5.1e-78 295.8 161 91.9
Sopen07g025700 Solanum pennellii HOM05D004820 ORTHO05D005946 8.7e-78 295.0 333 52.3
CAN.G198.19 Capsicum annuum HOM05D004820 ORTHO05D005946 1.3e-76 291.2 346 51.4
Zm00001eb426870 Zea mays HOM05D004820 ORTHO05D005946 6.9e-75 285.4 165 86.7
Sopen07g025830 Solanum pennellii HOM05D004820 ORTHO05D005946 1.4e-67 261.2 250 58.0
Cpa.g.sc52.46 Carica papaya HOM05D004820 ORTHO05D005946 1.2e-63 248.1 139 89.2
Solyc07g052050.2 Solanum lycopersicum HOM05D004820 ORTHO05D005946 2.6e-58 230.3 158 73.4
SHI31234 Sapria himalayana HOM05D004820 ORTHO05D005946 2.7e-55 220.3 115 92.2
HanXRQChr15g0487721 Helianthus annuus HOM05D004820 ORTHO05D005946 3.8e-49 199.9 162 63.6
Zm00001eb426830 Zea mays HOM05D004820 ORTHO05D005946 2.1e-47 194.1 117 84.6
Lj1g0027313 Lotus japonicus HOM05D004820 ORTHO05D005946 2.5e-45 187.2 159 61.6
Sopen07g025690 Solanum pennellii HOM05D004820 ORTHO05D005946 2.5e-45 187.2 124 75.8
Sopen07g025610 Solanum pennellii HOM05D004820 ORTHO05D005946 1.1e-40 171.8 256 44.9
Os03g0701100 Oryza sativa ssp. japonica HOM05D004820 ORTHO05D005946 2.5e-40 170.6 277 44.4
MCO06G052 Micromonas commoda HOM05D004820 ORTHO05D005946 4.2e-40 169.9 156 53.2
Cre13.g567750 Chlamydomonas reinhardtii HOM05D004820 ORTHO05D005946 2.4e-35 154.1 402 35.1
Gohir.D05G222300 Gossypium hirsutum HOM05D004820 ORTHO05D005946 7.0e-27 125.9 62 96.8
Gohir.D11G242500 Gossypium hirsutum HOM05D004820 ORTHO05D005946 2.0e-26 124.4 62 95.2
Gorai.009G229700 Gossypium raimondii HOM05D004820 ORTHO05D005946 2.0e-26 124.4 62 95.2
CARHR182160 Cardamine hirsuta HOM05D004820 ORTHO05D005946 2.6e-26 124.0 111 59.5
Nitab4.5_0003852g0050 Nicotiana tabacum HOM05D004820 ORTHO05D005946 4.5e-26 123.2 161 47.8
Gorai.011G187700 Gossypium raimondii HOM05D004820 ORTHO05D005946 1.0e-25 122.1 62 93.5
BraA09t42170Z Brassica rapa HOM05D004820 ORTHO05D005946 6.5e-25 119.4 153 47.7
TAR365G1077 Trochodendron aralioides HOM05D004820 ORTHO05D005946 1.9e-24 117.9 97 62.9
vmacro14915 Vaccinium macrocarpon HOM05D004820 ORTHO05D005946 4.7e-23 113.2 138 65.9
Zm00001eb078380 Zea mays HOM05D004820 ORTHO05D005946 4.7e-23 113.2 72 77.8
Zm00001eb180190 Zea mays HOM05D004820 ORTHO05D005946 1.5e-21 108.2 68 79.4
Zm00001eb017440 Zea mays HOM05D004820 ORTHO05D005946 2.8e-20 104.0 66 77.3
Zm00001eb368520 Zea mays HOM05D004820 ORTHO05D005946 3.7e-20 103.6 68 76.5
Nitab4.5_0003327g0040 Nicotiana tabacum HOM05D004820 ORTHO05D005946 4.8e-20 103.2 153 45.1
Nn4g23784 Nelumbo nucifera HOM05D004820 ORTHO05D005946 3.5e-18 97.1 108 51.9
Dinv32923 Davidia involucrata HOM05D004820 ORTHO05D005946 2.0e-10 71.2 49 77.6
C06p09790 Brassica napus HOM05D004820 ORTHO05D001418 8.5e-09 65.9 47 68.1
BolC6t36051H Brassica oleracea HOM05D004820 ORTHO05D001418 8.5e-09 65.9 47 68.1


User provided reference genes

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