Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.002G288000 Phaseolus vulgaris HOM05D004635 ORTHO05D005899 0.0e+00 1228.4 632 100.0
VMungo0251G2718 Vigna mungo HOM05D004635 ORTHO05D005899 0.0e+00 1119.0 632 91.1
Glyma.08G013300 Glycine max HOM05D004635 ORTHO05D005899 4.9e-298 1027.3 636 84.0
Ca_17544_v3 Cicer arietinum L. HOM05D004635 ORTHO05D005899 3.6e-248 861.7 628 71.8
Glyma.05G206400 Glycine max HOM05D004635 ORTHO05D005899 7.9e-248 860.5 548 82.7
TPR.G12861 Trifolium pratense HOM05D004635 ORTHO05D005899 3.3e-246 855.1 640 69.8
Lj4g0017456 Lotus japonicus HOM05D004635 ORTHO05D005899 2.4e-244 849.0 643 70.5
arahy.Tifrunner.gnm1.ann1.NB74KP Arachis hypogaea HOM05D004635 ORTHO05D005899 5.2e-239 831.2 639 67.9
Lalb_Chr05g0224871 Lupinus albus HOM05D004635 ORTHO05D005899 5.7e-238 827.8 643 69.7
Medtr8g098490 Medicago truncatula HOM05D004635 ORTHO05D005899 1.7e-237 826.2 637 70.2
Psat7g034520 Pisum sativum HOM05D004635 ORTHO05D005899 3.1e-236 822.0 602 71.1
arahy.Tifrunner.gnm1.ann1.Y4HLQF Arachis hypogaea HOM05D004635 ORTHO05D005899 7.0e-236 820.8 625 68.5
arahy.Tifrunner.gnm1.ann1.MF5MQE Arachis hypogaea HOM05D004635 ORTHO05D005899 1.0e-226 790.4 626 66.9
arahy.Tifrunner.gnm1.ann1.BGY2GF Arachis hypogaea HOM05D004635 ORTHO05D005899 2.2e-226 789.3 630 66.7
Duzib084G1397 Durio zibethinus HOM05D004635 ORTHO05D005899 3.7e-221 771.9 629 63.6
Dinv38955 Davidia involucrata HOM05D004635 ORTHO05D005899 3.1e-220 768.8 638 62.9
Atru.chr9.2220 Acer truncatum HOM05D004635 ORTHO05D005899 2.0e-219 766.1 635 62.4
Ciclev10019281m.g Citrus clementina HOM05D004635 ORTHO05D005899 2.7e-219 765.8 633 61.8
Manes.01G063000 Manihot esculenta HOM05D004635 ORTHO05D005899 2.2e-218 762.7 636 61.6
COL.COLO4_34438 Corchorus olitorius HOM05D004635 ORTHO05D005899 8.5e-218 760.8 643 61.7
Potri.003G124700 Populus trichocarpa HOM05D004635 ORTHO05D005899 8.0e-216 754.2 638 61.6
Thecc.03G276500 Theobroma cacao HOM05D004635 ORTHO05D005899 1.0e-215 753.8 636 62.4
Sabra03G0088200 Salix brachista HOM05D004635 ORTHO05D005899 1.4e-215 753.4 637 62.0
PGR042G2640 Punica granatum HOM05D004635 ORTHO05D005899 5.7e-214 748.0 642 61.8
Actinidia02016 Actinidia chinensis HOM05D004635 ORTHO05D005899 2.2e-213 746.1 629 62.0
CsaV3_5G002950 Cucumis sativus L. HOM05D004635 ORTHO05D005899 1.6e-211 740.0 639 60.1
Gohir.A09G192700 Gossypium hirsutum HOM05D004635 ORTHO05D005899 3.8e-210 735.3 639 60.9
Eucgr.E00572 Eucalyptus grandis HOM05D004635 ORTHO05D005899 1.5e-209 733.4 634 60.6
Gohir.D09G186900 Gossypium hirsutum HOM05D004635 ORTHO05D005899 1.9e-209 733.0 639 60.3
MELO3C005661.2 Cucumis melo HOM05D004635 ORTHO05D005899 4.3e-209 731.9 639 60.3
Gorai.006G209700 Gossypium raimondii HOM05D004635 ORTHO05D005899 7.3e-209 731.1 639 60.1
TWI81G1014 Tripterygium wilfordii HOM05D004635 ORTHO05D005899 9.5e-209 730.7 632 60.6
Hma1.2p1_0377F.1_g139240 Hydrangea macrophylla HOM05D004635 ORTHO05D005899 1.2e-203 713.8 631 62.3
Prupe.5G097400 Prunus persica HOM05D004635 ORTHO05D005899 1.2e-203 713.8 636 60.4
TAR636G1354 Trochodendron aralioides HOM05D004635 ORTHO05D005899 2.0e-203 713.0 629 59.9
ClCG01G002860 Citrullus lanatus HOM05D004635 ORTHO05D005899 3.5e-203 712.2 638 59.1
Cpa.g.sc202.13 Carica papaya HOM05D004635 ORTHO05D005899 1.0e-202 710.7 631 60.1
RcHm_v2.0_Chr7g0211871 Rosa chinensis HOM05D004635 ORTHO05D005899 1.7e-202 709.9 631 60.2
QL01p003129 Quercus lobata HOM05D004635 ORTHO05D005899 1.5e-201 706.8 645 60.8
CSS0019840 Camellia sinensis var. sinensis HOM05D004635 ORTHO05D005899 1.9e-201 706.4 630 58.6
Aqoxy5G04278 Aquilegia oxysepala HOM05D004635 ORTHO05D005899 7.3e-201 704.5 640 58.9
Haze_08871 Corylus avellana HOM05D004635 ORTHO05D005899 9.5e-201 704.1 642 59.2
Lj6A677T80 Lonicera japonica HOM05D004635 ORTHO05D005899 2.1e-200 703.0 650 58.8
TAR629G3080 Trochodendron aralioides HOM05D004635 ORTHO05D005899 6.2e-200 701.4 612 61.1
MD14G1101800 Malus domestica HOM05D004635 ORTHO05D005899 1.1e-199 700.7 643 60.7
Cfa012156 Carpinus fangiana HOM05D004635 ORTHO05D005899 5.2e-199 698.4 643 59.3
Nn5g27546 Nelumbo nucifera HOM05D004635 ORTHO05D005899 6.8e-199 698.0 628 59.2
Nn1g02763 Nelumbo nucifera HOM05D004635 ORTHO05D005899 2.0e-198 696.4 627 59.2
vmacro11312 Vaccinium macrocarpon HOM05D004635 ORTHO05D005899 2.2e-197 693.0 612 60.1
FAN13G3179 Fragaria x ananassa HOM05D004635 ORTHO05D005899 1.6e-195 686.8 634 59.9
FAN04G0694 Fragaria x ananassa HOM05D004635 ORTHO05D005899 1.3e-194 683.7 634 58.5
FAN18G0535 Fragaria x ananassa HOM05D004635 ORTHO05D005899 2.3e-194 682.9 633 58.9
SGA_v2.0_scaffold146G36254 Striga asiatica HOM05D004635 ORTHO05D005899 5.0e-194 681.8 637 57.5
THA.LOC104818064 Tarenaya hassleriana HOM05D004635 ORTHO05D005899 6.6e-194 681.4 636 57.9
CAN.G792.84 Capsicum annuum HOM05D004635 ORTHO05D005899 1.1e-193 680.6 604 59.6
FvH4_5g23090 Fragaria vesca HOM05D004635 ORTHO05D005899 1.5e-193 680.2 632 57.9
DCAR_000603 Daucus carota HOM05D004635 ORTHO05D005899 2.5e-193 679.5 627 57.4
Nitab4.5_0003907g0020 Nicotiana tabacum HOM05D004635 ORTHO05D005899 2.5e-193 679.5 604 59.4
PGSC0003DMG400029793 Solanum tuberosum HOM05D004635 ORTHO05D005899 2.5e-193 679.5 605 58.8
GSVIVG01019776001 Vitis vinifera HOM05D004635 ORTHO05D005899 5.6e-193 678.3 638 57.2
FAN18G1690 Fragaria x ananassa HOM05D004635 ORTHO05D005899 1.2e-192 677.2 633 58.6
CANSAT78G0227 Cannabis sativa HOM05D004635 ORTHO05D005899 2.8e-192 676.0 642 58.7
Hund11485 Selenicereus undatus HOM05D004635 ORTHO05D005899 1.2e-190 670.6 646 56.5
Nitab4.5_0004836g0050 Nicotiana tabacum HOM05D004635 ORTHO05D005899 2.0e-190 669.8 602 58.0
MBI18_g19087_MAGBIO Magnolia biondii HOM05D004635 ORTHO05D005899 1.3e-189 667.2 638 56.6
AUR62017259 Chenopodium quinoa HOM05D004635 ORTHO05D005899 1.7e-189 666.8 646 57.9
PSO384G0809 Papaver somniferum HOM05D004635 ORTHO05D005899 4.9e-189 665.2 639 57.0
Peaxi162Scf00102g01512 Petunia axillaris HOM05D004635 ORTHO05D005899 1.1e-188 664.1 630 57.0
HanXRQChr13g0416481 Helianthus annuus HOM05D004635 ORTHO05D005899 1.9e-188 663.3 642 57.9
ECA240G4094 Erigeron canadensis HOM05D004635 ORTHO05D005899 3.2e-188 662.5 643 56.1
AUR62010616 Chenopodium quinoa HOM05D004635 ORTHO05D005899 7.1e-188 661.4 655 56.9
PSO339G4625 Papaver somniferum HOM05D004635 ORTHO05D005899 9.2e-188 661.0 643 56.9
Carub.0007s3429 Capsella rubella HOM05D004635 ORTHO05D005899 1.2e-187 660.6 635 55.6
PSO017G3139 Papaver somniferum HOM05D004635 ORTHO05D005899 1.2e-187 660.6 641 57.7
EL10Ac5g12781 Beta vulgaris HOM05D004635 ORTHO05D005899 7.8e-187 657.9 625 58.4
PSO170G0760 Papaver somniferum HOM05D004635 ORTHO05D005899 7.8e-187 657.9 641 57.4
Aa31LG9G660 Aethionema arabicum HOM05D004635 ORTHO05D005899 6.6e-186 654.8 632 57.0
AL7G48240 Arabidopsis lyrata HOM05D004635 ORTHO05D005899 6.6e-186 654.8 641 55.7
MSTRG.13840 Avicennia marina HOM05D004635 ORTHO05D005899 1.1e-185 654.1 640 55.9
Solyc08g007990.3 Solanum lycopersicum HOM05D004635 ORTHO05D005899 3.3e-185 652.5 606 56.8
AT5G41190 Arabidopsis thaliana HOM05D004635 ORTHO05D005899 4.3e-185 652.1 633 55.8
EL10Ac1g00317 Beta vulgaris HOM05D004635 ORTHO05D005899 4.3e-185 652.1 625 58.2
Sopen08g003860 Solanum pennellii HOM05D004635 ORTHO05D005899 6.2e-184 648.3 604 56.1
Sp7g00720 Schrenkiella parvula HOM05D004635 ORTHO05D005899 8.9e-183 644.4 632 55.4
SpUn0010_0200 Schrenkiella parvula HOM05D004635 ORTHO05D005899 8.9e-183 644.4 632 55.4
PGSC0003DMG400005819 Solanum tuberosum HOM05D004635 ORTHO05D005899 8.9e-183 644.4 606 56.8
Sed0015372 Sechium edule HOM05D004635 ORTHO05D005899 7.6e-182 641.3 629 54.8
Cc08_g14490 Coffea canephora HOM05D004635 ORTHO05D005899 4.1e-180 635.6 602 56.0
Lsat_1_v5_gn_6_87181 Lactuca sativa HOM05D004635 ORTHO05D005899 6.0e-179 631.7 639 56.2
C04p48290 Brassica napus HOM05D004635 ORTHO05D005899 3.0e-178 629.4 634 54.6
BcaC02g08976 Brassica carinata HOM05D004635 ORTHO05D005899 6.6e-178 628.2 635 54.8
BolC4t26422H Brassica oleracea HOM05D004635 ORTHO05D005899 6.6e-178 628.2 635 54.8
RcHm_v2.0_Chr7g0179141 Rosa chinensis HOM05D004635 ORTHO05D005899 1.1e-177 627.5 632 55.4
Thhalv10027696m.g Eutrema salsugineum HOM05D004635 ORTHO05D005899 1.9e-177 626.7 635 55.4
BcaB06g27604 Brassica carinata HOM05D004635 ORTHO05D005899 3.3e-177 625.9 634 54.3
SalBow6G1328 Salvia bowleyana HOM05D004635 ORTHO05D005899 3.3e-177 625.9 633 54.3
FAN08G3353 Fragaria x ananassa HOM05D004635 ORTHO05D005899 4.3e-177 625.5 564 59.6
BraA04t17085Z Brassica rapa HOM05D004635 ORTHO05D005899 2.4e-175 619.8 634 54.1
A04p14360 Brassica napus HOM05D004635 ORTHO05D005899 9.0e-175 617.8 634 53.9
Sed0018462 Sechium edule HOM05D004635 ORTHO05D005899 3.8e-173 612.5 526 61.8
ATR0064G111 Amborella trichopoda HOM05D004635 ORTHO05D005899 4.9e-173 612.1 625 55.5
BraA07t29762Z Brassica rapa HOM05D004635 ORTHO05D005899 1.9e-172 610.1 628 53.7
A07p20710 Brassica napus HOM05D004635 ORTHO05D005899 9.3e-172 607.8 629 53.9
CARHR213190 Cardamine hirsuta HOM05D004635 ORTHO05D005899 3.3e-161 572.8 629 51.5
HPP92_020857 Vanilla planifolia HOM05D004635 ORTHO05D005899 1.1e-159 567.8 635 48.8
CiPaw.11G137400 Carya illinoinensis HOM05D004635 ORTHO05D005899 1.4e-159 567.4 545 58.5
BcaB02g07904 Brassica carinata HOM05D004635 ORTHO05D005899 7.6e-158 561.6 632 50.5
CDE06G0591 Ceratophyllum demersum HOM05D004635 ORTHO05D005899 3.9e-146 522.7 537 53.6
Os02g0114700 Oryza sativa ssp. japonica HOM05D004635 ORTHO05D005899 5.7e-145 518.8 601 48.6
SEGI_23350 Sequoiadendron giganteum HOM05D004635 ORTHO05D005899 2.8e-144 516.5 636 46.1
unitig_37.g12250 Utricularia gibba HOM05D004635 ORTHO05D005899 1.2e-139 501.1 610 49.7
Oeu011058.1 Olea europaea HOM05D004635 ORTHO05D005899 7.9e-139 498.4 607 47.9
BcaC08g44516 Brassica carinata HOM05D004635 ORTHO05D005899 3.0e-138 496.5 632 46.2
Actinidia14552 Actinidia chinensis HOM05D004635 ORTHO05D005899 8.8e-138 495.0 458 58.5
Zm00001eb209610 Zea mays HOM05D004635 ORTHO05D005899 1.7e-136 490.7 599 46.1
Thhalv10009994m.g Eutrema salsugineum HOM05D004635 ORTHO05D005899 1.8e-135 487.3 637 46.0
Sc01g0009470 Simmondsia chinensis HOM05D004635 ORTHO05D005899 2.5e-124 450.3 480 54.2
Zm00001eb229850 Zea mays HOM05D004635 ORTHO05D005899 2.8e-120 436.8 532 47.2
Carub.0004s0410 Capsella rubella HOM05D004635 ORTHO05D005899 2.5e-116 423.7 537 46.6
RcHm_v2.0_Chr7g0211921 Rosa chinensis HOM05D004635 ORTHO05D005899 1.8e-111 407.5 403 57.3
Pp3c2_34320 Physcomitrium patens HOM05D004635 ORTHO05D005899 2.4e-111 407.1 665 40.2
Migut.A00784 Erythranthe guttata HOM05D004635 ORTHO05D005899 7.2e-108 395.6 449 50.6
C06p19650 Brassica napus HOM05D004635 ORTHO05D005899 3.1e-103 380.2 439 49.4
Dinv37658 Davidia involucrata HOM05D004635 ORTHO05D005899 1.1e-100 371.7 338 59.5
RcHm_v2.0_Chr2g0099081 Rosa chinensis HOM05D004635 ORTHO05D005899 1.2e-99 368.2 552 43.1
AagrBONN_evm.TU.Sc2ySwM_362.355 Anthoceros agrestis HOM05D004635 ORTHO05D005899 2.8e-96 357.1 630 38.9
BolC6t37157H Brassica oleracea HOM05D004635 ORTHO05D005899 1.0e-85 322.0 295 56.9
FAN26G1714 Fragaria x ananassa HOM05D004635 ORTHO05D005899 4.3e-84 316.6 372 51.1
FAN28G2416 Fragaria x ananassa HOM05D004635 ORTHO05D005899 5.6e-84 316.2 385 50.1
SMO171G0086 Selaginella moellendorffii HOM05D004635 ORTHO05D005899 4.7e-83 313.2 616 35.2
CDE05G1698 Ceratophyllum demersum HOM05D004635 ORTHO05D005899 1.1e-82 312.0 450 43.8
Dinv37657 Davidia involucrata HOM05D004635 ORTHO05D005899 1.0e-77 295.4 252 59.9
BolC6t37158H Brassica oleracea HOM05D004635 ORTHO05D005899 2.2e-72 277.7 242 59.5
Mapoly0033s0014 Marchantia polymorpha HOM05D004635 ORTHO05D005899 3.2e-71 273.9 576 35.9
RcHm_v2.0_Chr7g0211961 Rosa chinensis HOM05D004635 ORTHO05D005899 5.8e-65 253.1 203 65.5
CBR_g50931 Chara braunii HOM05D004635 ORTHO05D005899 4.9e-64 250.0 778 30.3
BcaC08g44514 Brassica carinata HOM05D004635 ORTHO05D005899 6.0e-62 243.0 148 73.0
BcaC04g18687 Brassica carinata HOM05D004635 ORTHO05D005899 5.6e-60 236.5 335 42.4
BolC9t58686H Brassica oleracea HOM05D004635 ORTHO05D005899 9.6e-60 235.7 356 40.7
C09p58220 Brassica napus HOM05D000111 ORTHO05D000134 2.6e-57 227.6 335 42.1
VMungo1127G2192 Vigna mungo HOM05D004635 ORTHO05D005899 4.2e-55 220.3 167 70.1
MCO14G249 Micromonas commoda HOM05D004635 ORTHO05D005899 1.1e-42 179.1 526 28.9
PRCOL_00006831 Prasinoderma coloniale HOM05D004635 ORTHO05D005899 6.9e-42 176.4 592 28.2
QL12p018319 Quercus lobata HOM05D004635 ORTHO05D005899 3.8e-40 170.6 414 32.4
Cre01.g031750 Chlamydomonas reinhardtii HOM05D004635 ORTHO05D005899 1.3e-37 162.2 549 28.2
C06p19660 Brassica napus HOM05D004635 ORTHO05D005899 1.8e-37 161.8 123 62.6
BcaC08g44517 Brassica carinata HOM05D004635 ORTHO05D005899 1.3e-29 135.6 279 37.6
Solyc12g015770.3 Solanum lycopersicum HOM05D000074 ORTHO05D001262 1.7e-19 102.1 60 76.7
EL10Ac8g19215 Beta vulgaris HOM05D000238 ORTHO05D001043 4.8e-19 100.5 83 59.0
Lj2C188G13 Lonicera japonica HOM05D004635 ORTHO05D005899 3.1e-18 97.8 80 60.0
Lj2C188G12 Lonicera japonica HOM05D004635 ORTHO05D005899 9.1e-18 96.3 194 34.0
EL10Ac5g10794 Beta vulgaris HOM05D004635 ORTHO05D005899 7.9e-14 83.2 97 55.7
AL4G15290 Arabidopsis lyrata HOM05D004635 ORTHO05D079484 1.5e-09 68.9 66 56.1
Sopen12g007660 Solanum pennellii HOM05D000006 ORTHO05D000695 1.4e-07 62.4 40 62.5
arahy.Tifrunner.gnm1.ann1.CCN99U Arachis hypogaea HOM05D004635 ORTHO05D085572 1.9e-07 62.0 45 66.7


User provided reference genes

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