Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.002G244500 Phaseolus vulgaris HOM05D007300 ORTHO05D009301 0.0e+00 1304.3 666 100.0
VMungo0251G3397 Vigna mungo HOM05D007300 ORTHO05D009301 0.0e+00 1109.4 657 88.0
Glyma.08G121900 Glycine max HOM05D007300 ORTHO05D009301 5.7e-305 1050.4 669 81.3
Glyma.05G164500 Glycine max HOM05D007300 ORTHO05D009301 1.7e-301 1038.9 691 79.6
Lj4g0024386 Lotus japonicus HOM05D007300 ORTHO05D009301 8.9e-258 893.6 660 70.2
Medtr8g088030 Medicago truncatula HOM05D007300 ORTHO05D009301 7.8e-254 880.6 682 67.7
Ca_17871_v3 Cicer arietinum L. HOM05D007300 ORTHO05D009301 1.7e-253 879.4 676 67.9
TPR.G6793 Trifolium pratense HOM05D007300 ORTHO05D009301 4.2e-239 831.6 673 65.5
Lalb_Chr13g0295471 Lupinus albus HOM05D007300 ORTHO05D009301 2.1e-238 829.3 672 65.6
Psat7g066760 Pisum sativum HOM05D007300 ORTHO05D009301 6.6e-237 824.3 709 61.8
arahy.Tifrunner.gnm1.ann1.D64P8M Arachis hypogaea HOM05D007300 ORTHO05D009301 1.1e-231 807.0 653 65.4
arahy.Tifrunner.gnm1.ann1.FQ35JE Arachis hypogaea HOM05D007300 ORTHO05D009301 4.6e-230 801.6 667 64.0
Cfa001024 Carpinus fangiana HOM05D007300 ORTHO05D009301 5.1e-205 718.4 592 63.3
QL05p060322 Quercus lobata HOM05D007300 ORTHO05D009301 7.2e-199 698.0 602 61.3
CiPaw.10G096200 Carya illinoinensis HOM05D007300 ORTHO05D009301 2.6e-196 689.5 671 56.0
Haze_05485 Corylus avellana HOM05D007300 ORTHO05D009301 1.0e-192 677.6 750 51.6
RcHm_v2.0_Chr5g0012901 Rosa chinensis HOM05D007300 ORTHO05D009301 1.2e-190 670.6 596 58.9
TWI73G0852 Tripterygium wilfordii HOM05D007300 ORTHO05D009301 1.4e-189 667.2 593 57.7
FAN21G2574 Fragaria x ananassa HOM05D007300 ORTHO05D009301 9.7e-188 661.0 594 58.6
Potri.001G353800 Populus trichocarpa HOM05D007300 ORTHO05D009301 2.2e-187 659.8 603 58.2
FvH4_3g06410 Fragaria vesca HOM05D007300 ORTHO05D009301 1.6e-185 653.7 594 58.1
GSVIVG01021378001 Vitis vinifera HOM05D007300 ORTHO05D009301 2.0e-185 653.3 676 54.4
Prupe.4G073700 Prunus persica HOM05D007300 ORTHO05D009301 3.5e-185 652.5 673 54.1
Dinv32299 Davidia involucrata HOM05D007300 ORTHO05D009301 9.4e-183 644.4 595 58.2
TAR627G1006 Trochodendron aralioides HOM05D007300 ORTHO05D009301 1.2e-180 637.5 603 55.1
Gorai.011G040700 Gossypium raimondii HOM05D007300 ORTHO05D009301 2.0e-180 636.7 668 53.7
Thecc.06G157700 Theobroma cacao HOM05D007300 ORTHO05D009301 2.0e-180 636.7 604 56.6
CSS0020184 Camellia sinensis var. sinensis HOM05D007300 ORTHO05D009301 5.7e-180 635.2 598 56.9
Ciclev10014510m.g Citrus clementina HOM05D007300 ORTHO05D009301 5.7e-180 635.2 604 56.1
ClCG03G007190 Citrullus lanatus HOM05D007300 ORTHO05D009301 9.7e-180 634.4 591 56.5
Gohir.D10G038600 Gossypium hirsutum HOM05D007300 ORTHO05D009301 9.7e-180 634.4 668 53.7
Gohir.A10G037600 Gossypium hirsutum HOM05D007300 ORTHO05D009301 1.7e-179 633.6 669 53.4
MD05G1291800 Malus domestica HOM05D007300 ORTHO05D009301 8.2e-179 631.3 628 55.7
Actinidia19486 Actinidia chinensis HOM05D007300 ORTHO05D009301 9.1e-178 627.9 600 56.2
Sabra16G0232700 Salix brachista HOM05D007300 ORTHO05D009301 2.0e-177 626.7 622 54.7
FAN11G2841 Fragaria x ananassa HOM05D007300 ORTHO05D009301 2.2e-176 623.2 655 52.5
CANSAT35G1474 Cannabis sativa HOM05D007300 ORTHO05D009301 4.2e-175 619.0 648 52.5
CsaV3_1G032780 Cucumis sativus L. HOM05D007300 ORTHO05D009301 1.2e-174 617.5 596 54.4
Cpa.g.sc17.110 Carica papaya HOM05D007300 ORTHO05D009301 1.8e-173 613.6 594 52.7
Peaxi162Scf00649g00027 Petunia axillaris HOM05D007300 ORTHO05D009301 4.0e-173 612.5 600 53.8
Atru.chr10.1398 Acer truncatum HOM05D007300 ORTHO05D009301 1.1e-170 604.4 560 58.9
Atru.chr10.1407 Acer truncatum HOM05D007300 ORTHO05D009301 7.0e-170 601.7 560 58.4
Nitab4.5_0003714g0040 Nicotiana tabacum HOM05D007300 ORTHO05D009301 5.9e-169 598.6 598 52.8
COL.COLO4_22798 Corchorus olitorius HOM05D007300 ORTHO05D009301 1.7e-168 597.0 605 55.5
Manes.17G064900 Manihot esculenta HOM05D007300 ORTHO05D009301 2.9e-168 596.3 604 53.5
Nitab4.5_0001283g0060 Nicotiana tabacum HOM05D007300 ORTHO05D009301 2.9e-168 596.3 598 52.5
Eucgr.D00343 Eucalyptus grandis HOM05D007300 ORTHO05D009301 8.6e-168 594.7 584 53.8
Oeu021524.1 Olea europaea HOM05D007300 ORTHO05D009301 4.2e-167 592.4 599 52.9
Lsat_1_v5_gn_7_31040 Lactuca sativa HOM05D007300 ORTHO05D009301 5.5e-167 592.0 654 50.0
PGSC0003DMG400003073 Solanum tuberosum HOM05D007300 ORTHO05D009301 9.5e-167 591.3 589 53.1
HanXRQChr04g0119571 Helianthus annuus HOM05D007300 ORTHO05D009301 4.7e-166 589.0 646 50.0
CAN.G257.51 Capsicum annuum HOM05D007300 ORTHO05D009301 2.0e-164 583.6 601 52.9
Solyc02g071280.3 Solanum lycopersicum HOM05D007300 ORTHO05D009301 5.7e-164 582.0 597 51.6
Aqoxy1G01857 Aquilegia oxysepala HOM05D007300 ORTHO05D009301 9.8e-164 581.3 678 48.7
PSO541G4163 Papaver somniferum HOM05D007300 ORTHO05D009301 4.9e-163 578.9 593 53.6
MBI10_g02388_MAGBIO Magnolia biondii HOM05D007300 ORTHO05D009301 1.6e-161 573.9 595 51.3
DCAR_027959 Daucus carota HOM05D007300 ORTHO05D009301 5.9e-161 572.0 600 52.5
Sopen02g020340 Solanum pennellii HOM05D007300 ORTHO05D009301 7.8e-161 571.6 600 51.3
ECA236G2360 Erigeron canadensis HOM05D007300 ORTHO05D009301 8.6e-160 568.2 648 47.7
Duzib235G1110 Durio zibethinus HOM05D007300 ORTHO05D009301 2.5e-159 566.6 604 52.2
THA.LOC104827733 Tarenaya hassleriana HOM05D007300 ORTHO05D009301 8.9e-157 558.1 660 45.9
Lj1C1181T32 Lonicera japonica HOM05D007300 ORTHO05D009301 1.2e-156 557.8 619 50.2
Thhalv10000812m.g Eutrema salsugineum HOM05D007300 ORTHO05D009301 9.8e-156 554.7 673 46.4
Nn3g20905 Nelumbo nucifera HOM05D007300 ORTHO05D009301 9.8e-156 554.7 627 50.6
Migut.M00959 Erythranthe guttata HOM05D007300 ORTHO05D009301 2.0e-153 547.0 661 48.3
SGA_v2.0_scaffold1G00132 Striga asiatica HOM05D007300 ORTHO05D009301 4.6e-153 545.8 580 52.1
AUR62027555 Chenopodium quinoa HOM05D007300 ORTHO05D009301 5.9e-153 545.4 595 49.6
CARHR175340 Cardamine hirsuta HOM05D007300 ORTHO05D009301 1.0e-152 544.7 580 49.1
PGR044G1273 Punica granatum HOM05D007300 ORTHO05D009301 2.3e-152 543.5 547 53.6
Sp2g11270 Schrenkiella parvula HOM05D007300 ORTHO05D009301 1.1e-151 541.2 661 45.8
Aa31LG9G6430 Aethionema arabicum HOM05D007300 ORTHO05D009301 1.9e-151 540.4 595 47.6
AT5G46420 Arabidopsis thaliana HOM05D007300 ORTHO05D009301 1.9e-151 540.4 582 48.8
AL8G11990 Arabidopsis lyrata HOM05D007300 ORTHO05D009301 2.5e-151 540.0 661 44.8
SalBow8G1735 Salvia bowleyana HOM05D007300 ORTHO05D009301 3.3e-151 539.7 601 49.8
Carub.0008s0147 Capsella rubella HOM05D007300 ORTHO05D009301 4.3e-151 539.3 597 47.1
BolC7t43517H Brassica oleracea HOM05D007300 ORTHO05D009301 9.5e-151 538.1 658 46.0
C07p29650 Brassica napus HOM05D007300 ORTHO05D009301 2.1e-150 537.0 658 45.9
A06p45940 Brassica napus HOM05D007300 ORTHO05D009301 1.8e-149 533.9 659 46.0
AUR62035801 Chenopodium quinoa HOM05D007300 ORTHO05D009301 3.1e-149 533.1 595 49.1
Sc05g0006590 Simmondsia chinensis HOM05D007300 ORTHO05D009301 1.2e-148 531.2 656 46.3
BraA06t27457Z Brassica rapa HOM05D007300 ORTHO05D009301 8.3e-147 525.0 645 46.0
HPP92_023296 Vanilla planifolia HOM05D007300 ORTHO05D009301 6.0e-137 492.3 640 43.4
FAN16G1565 Fragaria x ananassa HOM05D007300 ORTHO05D009301 5.6e-135 485.7 479 56.4
ATR1153G036 Amborella trichopoda HOM05D007300 ORTHO05D009301 1.0e-128 464.9 599 44.9
EL10Ac8g19794 Beta vulgaris HOM05D007300 ORTHO05D009301 9.3e-122 441.8 600 42.5
Sed0024786 Sechium edule HOM05D007300 ORTHO05D009301 5.1e-112 409.5 441 52.6
PSO675G3105 Papaver somniferum HOM05D007300 ORTHO05D009301 1.2e-100 371.7 349 57.9
unitig_92.g28150 Utricularia gibba HOM05D007300 ORTHO05D009301 2.7e-97 360.5 504 40.9
HPP92_023271 Vanilla planifolia HOM05D007300 ORTHO05D009301 1.3e-94 351.7 638 34.6
SEGI_38698 Sequoiadendron giganteum HOM05D007300 ORTHO05D009301 7.9e-89 332.4 576 33.3
MELO3C002704.2 Cucumis melo HOM05D007300 ORTHO05D009301 2.1e-73 281.2 355 44.8
Mapoly0019s0078 Marchantia polymorpha HOM05D007300 ORTHO05D009301 2.7e-73 280.8 678 28.8
Zm00001eb296050 Zea mays HOM05D007300 ORTHO05D009301 8.0e-73 279.3 341 43.7
CDE06G2820 Ceratophyllum demersum HOM05D007300 ORTHO05D009301 7.4e-71 272.7 343 46.6
Pp3c15_14250 Physcomitrium patens HOM05D007300 ORTHO05D009301 2.7e-65 254.2 531 31.6
AagrBONN_evm.TU.Sc2ySwM_228.1844 Anthoceros agrestis HOM05D007300 ORTHO05D004905 7.7e-60 236.1 537 30.7
Os05g0566300 Oryza sativa ssp. japonica HOM05D007300 ORTHO05D009301 6.5e-59 233.0 225 48.4
Zm00001eb349440 Zea mays HOM05D007300 ORTHO05D009301 4.7e-41 173.7 177 48.6
Gorai.004G093400 Gossypium raimondii HOM05D007300 ORTHO05D009301 1.9e-34 151.8 125 57.6
Gohir.D08G088700 Gossypium hirsutum HOM05D007300 ORTHO05D009301 1.2e-33 149.1 125 56.8
SEGI_17563 Sequoiadendron giganteum HOM05D007300 ORTHO05D009301 1.8e-32 145.2 175 41.1
MCO05G669 Micromonas commoda HOM05D007300 ORTHO05D009301 5.6e-26 123.6 226 33.2
Cre03.g191950 Chlamydomonas reinhardtii HOM05D007300 ORTHO05D009301 8.6e-19 99.8 215 27.9
CDE06G1765 Ceratophyllum demersum HOM05D007300 ORTHO05D009301 4.7e-17 94.0 157 36.9
Zm00001eb184690 Zea mays HOM05D007300 ORTHO05D009301 1.1e-16 92.8 82 46.3
Pp3c4_17200 Physcomitrium patens HOM05D003927 ORTHO05D004905 1.3e-11 75.9 327 20.8
Medtr4g094668 Medicago truncatula HOM05D003927 ORTHO05D004905 8.4e-06 56.6 166 22.9


User provided reference genes

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