Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PSO765G0134 Papaver somniferum HOM05D003203 ORTHO05D003526 1.2e-86 323.2 160 100.0
PSO765G0203 Papaver somniferum HOM05D003203 ORTHO05D003526 2.0e-75 285.8 162 88.3
PSO339G3960 Papaver somniferum HOM05D003203 ORTHO05D003526 3.4e-70 268.5 155 83.2
PSO063G5461 Papaver somniferum HOM05D003203 ORTHO05D003526 9.8e-70 266.9 155 83.2
TAR636G0568 Trochodendron aralioides HOM05D003203 ORTHO05D003526 2.0e-54 216.1 158 66.5
Aqoxy4G03208 Aquilegia oxysepala HOM05D003203 ORTHO05D003526 3.4e-54 215.3 158 68.4
GSVIVG01025133001 Vitis vinifera HOM05D003203 ORTHO05D003526 9.9e-54 213.8 158 65.2
Actinidia15612 Actinidia chinensis HOM05D003203 ORTHO05D003526 3.7e-53 211.8 155 66.5
Duzib168G0563 Durio zibethinus HOM05D003203 ORTHO05D003526 3.7e-53 211.8 158 65.2
Aqoxy3G02870 Aquilegia oxysepala HOM05D003203 ORTHO05D003526 6.4e-53 211.1 158 67.7
Cfa011365 Carpinus fangiana HOM05D003203 ORTHO05D003526 8.3e-53 210.7 158 63.3
Lj2A1035T51 Lonicera japonica HOM05D003203 ORTHO05D003526 8.3e-53 210.7 158 63.9
Haze_23916 Corylus avellana HOM05D003203 ORTHO05D003526 1.4e-52 209.9 158 63.3
QL01p037166 Quercus lobata HOM05D003203 ORTHO05D003526 3.2e-52 208.8 157 61.8
SGA_v2.0_scaffold97G29171 Striga asiatica HOM05D003203 ORTHO05D003526 3.2e-52 208.8 158 62.7
COL.COLO4_25248 Corchorus olitorius HOM05D003203 ORTHO05D003526 4.1e-52 208.4 155 65.2
Nn2g10680 Nelumbo nucifera HOM05D003203 ORTHO05D003526 7.1e-52 207.6 158 64.6
CSS0047004 Camellia sinensis var. sinensis HOM05D003203 ORTHO05D003526 9.2e-52 207.2 158 64.6
Rhsim01G0220300 Rhododendron simsii HOM05D003203 ORTHO05D003526 1.2e-51 206.8 158 65.2
Manes.11G141000 Manihot esculenta HOM05D003203 ORTHO05D003526 1.6e-51 206.5 155 63.2
Cc01_g11550 Coffea canephora HOM05D003203 ORTHO05D003526 2.1e-51 206.1 158 63.9
Gorai.009G078900 Gossypium raimondii HOM05D003203 ORTHO05D003526 2.7e-51 205.7 158 62.7
Nitab4.5_0002129g0110 Nicotiana tabacum HOM05D003203 ORTHO05D003526 2.7e-51 205.7 155 64.5
Atru.chr3.3692 Acer truncatum HOM05D003203 ORTHO05D003526 4.6e-51 204.9 155 65.2
Cpa.g.sc139.68 Carica papaya HOM05D003203 ORTHO05D003526 4.6e-51 204.9 158 63.3
Eucgr.B02467 Eucalyptus grandis HOM05D003203 ORTHO05D003526 4.6e-51 204.9 158 62.7
SalBow3G4618 Salvia bowleyana HOM05D003203 ORTHO05D003526 4.6e-51 204.9 158 63.9
Lj1C185T11 Lonicera japonica HOM05D003203 ORTHO05D003526 6.0e-51 204.5 158 62.7
MSTRG.21144 Avicennia marina HOM05D003203 ORTHO05D003526 7.8e-51 204.1 158 62.7
Gohir.D05G077500 Gossypium hirsutum HOM05D003203 ORTHO05D003526 7.8e-51 204.1 158 62.0
vmacro14071 Vaccinium macrocarpon HOM05D003203 ORTHO05D003526 1.0e-50 203.8 158 62.0
Sopen11g030070 Solanum pennellii HOM05D003203 ORTHO05D003526 1.3e-50 203.4 155 63.2
Dinv32789 Davidia involucrata HOM05D003203 ORTHO05D003526 2.3e-50 202.6 158 61.4
PGSC0003DMG400027376 Solanum tuberosum HOM05D003203 ORTHO05D003526 3.9e-50 201.8 155 62.6
TWI31G0332 Tripterygium wilfordii HOM05D003203 ORTHO05D003526 3.9e-50 201.8 158 62.0
CAN.G553.12 Capsicum annuum HOM05D003203 ORTHO05D003526 6.6e-50 201.1 155 61.9
Thecc.09G260300 Theobroma cacao HOM05D003203 ORTHO05D003526 6.6e-50 201.1 155 64.5
Ciclev10027702m.g Citrus clementina HOM05D003203 ORTHO05D003526 8.6e-50 200.7 158 66.5
CiPaw.13G106900 Carya illinoinensis HOM05D003203 ORTHO05D003526 1.1e-49 200.3 158 60.1
Migut.N02091 Erythranthe guttata HOM05D003203 ORTHO05D003526 1.5e-49 199.9 151 63.6
Nitab4.5_0001802g0120 Nicotiana tabacum HOM05D003203 ORTHO05D003526 1.5e-49 199.9 154 62.3
PGR102G2647 Punica granatum HOM05D003203 ORTHO05D003526 1.5e-49 199.9 158 58.9
CDE07G0939 Ceratophyllum demersum HOM05D003203 ORTHO05D003526 2.5e-49 199.1 155 62.6
VMungo1127G1096 Vigna mungo HOM05D003203 ORTHO05D003526 3.3e-49 198.7 158 62.7
CAN.G352.39 Capsicum annuum HOM05D003203 ORTHO05D003526 9.5e-49 197.2 155 60.6
Lj1A185G36 Lonicera japonica HOM05D003203 ORTHO05D003526 9.5e-49 197.2 158 60.8
Nitab4.5_0010520g0020 Nicotiana tabacum HOM05D003203 ORTHO05D003526 9.5e-49 197.2 155 62.6
Oeu005910.3 Olea europaea HOM05D003203 ORTHO05D003526 9.5e-49 197.2 158 62.0
Peaxi162Scf00389g00932 Petunia axillaris HOM05D003203 ORTHO05D003526 9.5e-49 197.2 155 61.9
unitig_736.g22420 Utricularia gibba HOM05D003203 ORTHO05D003526 9.5e-49 197.2 158 60.8
Gohir.A05G074700 Gossypium hirsutum HOM05D003203 ORTHO05D003526 1.2e-48 196.8 158 60.1
Phvul.011G072500 Phaseolus vulgaris HOM05D003203 ORTHO05D003526 1.2e-48 196.8 158 61.4
Potri.016G083100 Populus trichocarpa HOM05D003203 ORTHO05D003526 1.2e-48 196.8 158 61.4
Nitab4.5_0000848g0100 Nicotiana tabacum HOM05D003203 ORTHO05D003526 1.6e-48 196.4 155 61.9
Migut.D02182 Erythranthe guttata HOM05D003203 ORTHO05D003526 2.8e-48 195.7 151 60.9
Lsat_1_v5_gn_6_26241 Lactuca sativa HOM05D003203 ORTHO05D003526 2.8e-48 195.7 155 57.4
HanXRQChr13g0401461 Helianthus annuus HOM05D003203 ORTHO05D003526 6.2e-48 194.5 155 58.1
Glyma.11G152960 Glycine max HOM05D003203 ORTHO05D003526 1.1e-47 193.7 158 60.8
Sabra16G0090500 Salix brachista HOM05D003203 ORTHO05D003526 1.1e-47 193.7 158 59.5
THA.LOC104815752 Tarenaya hassleriana HOM05D003203 ORTHO05D003526 5.2e-47 191.4 155 60.0
arahy.Tifrunner.gnm1.ann1.GJ7521 Arachis hypogaea HOM05D003203 ORTHO05D003526 6.8e-47 191.0 158 60.1
HanXRQChr09g0243461 Helianthus annuus HOM05D003203 ORTHO05D003526 8.9e-47 190.7 152 59.2
arahy.Tifrunner.gnm1.ann1.DWB64P Arachis hypogaea HOM05D003203 ORTHO05D003526 2.0e-46 189.5 158 58.9
RcHm_v2.0_Chr4g0389641 Rosa chinensis HOM05D003203 ORTHO05D003526 2.6e-46 189.1 155 60.0
Lalb_Chr03g0027111 Lupinus albus HOM05D003203 ORTHO05D003526 3.4e-46 188.7 158 58.9
DCAR_006042 Daucus carota HOM05D003203 ORTHO05D003526 4.4e-46 188.3 158 57.0
Prupe.6G094700 Prunus persica HOM05D003203 ORTHO05D003526 5.8e-46 188.0 158 62.0
ATR1159G092 Amborella trichopoda HOM05D003203 ORTHO05D003526 7.6e-46 187.6 158 58.9
FvH4_3g33360 Fragaria vesca HOM05D003203 ORTHO05D003526 9.9e-46 187.2 150 61.3
FAN11G3892 Fragaria x ananassa HOM05D003203 ORTHO05D003526 9.9e-46 187.2 150 61.3
CANSAT54G1869 Cannabis sativa HOM05D003203 ORTHO05D003526 1.3e-45 186.8 150 59.3
Psat7g223280 Pisum sativum HOM05D003203 ORTHO05D003526 1.3e-45 186.8 158 58.9
AUR62025015 Chenopodium quinoa HOM05D003203 ORTHO05D003526 1.7e-45 186.4 155 58.7
FAN17G1794 Fragaria x ananassa HOM05D003203 ORTHO05D003526 1.7e-45 186.4 155 60.0
Nitab4.5_0004347g0030 Nicotiana tabacum HOM05D003203 ORTHO05D003526 2.2e-45 186.0 153 60.1
Os07g0191700 Oryza sativa ssp. japonica HOM05D003203 ORTHO05D003526 2.2e-45 186.0 158 60.1
Ca_19241_v3 Cicer arietinum L. HOM05D003203 ORTHO05D003526 2.9e-45 185.7 155 60.6
MD11G1129800 Malus domestica HOM05D003203 ORTHO05D003526 2.9e-45 185.7 158 60.1
RcHm_v2.0_Chr5g0060751 Rosa chinensis HOM05D003203 ORTHO05D003526 3.8e-45 185.3 155 59.4
FvH4_4g02320 Fragaria vesca HOM05D003203 ORTHO05D003526 4.9e-45 184.9 155 59.4
FAN12G0401 Fragaria x ananassa HOM05D003203 ORTHO05D003526 4.9e-45 184.9 155 59.4
Lj3g0012673 Lotus japonicus HOM05D003203 ORTHO05D003526 4.9e-45 184.9 158 58.2
Lj3g0020808 Lotus japonicus HOM05D003203 ORTHO05D003526 4.9e-45 184.9 158 58.2
FAN21G1129 Fragaria x ananassa HOM05D003203 ORTHO05D003526 8.4e-45 184.1 150 60.0
Thhalv10006605m.g Eutrema salsugineum HOM05D003203 ORTHO05D003526 1.1e-44 183.7 156 57.7
FAN22G0069 Fragaria x ananassa HOM05D003203 ORTHO05D003526 1.4e-44 183.3 155 58.7
FAN16G3448 Fragaria x ananassa HOM05D003203 ORTHO05D003526 2.4e-44 182.6 150 60.0
HPP92_010123 Vanilla planifolia HOM05D002295 ORTHO05D002789 2.4e-44 182.6 149 59.1
CsaV3_1G013020 Cucumis sativus L. HOM05D003203 ORTHO05D003526 4.2e-44 181.8 158 57.6
TPR.G14912 Trifolium pratense HOM05D003203 ORTHO05D003526 4.2e-44 181.8 158 56.3
AUR62006513 Chenopodium quinoa HOM05D003203 ORTHO05D003526 5.4e-44 181.4 162 57.4
A09p66110 Brassica napus HOM05D003203 ORTHO05D003526 7.1e-44 181.0 156 56.4
BraA09t41949Z Brassica rapa HOM05D003203 ORTHO05D003526 7.1e-44 181.0 156 56.4
MELO3C005030.2 Cucumis melo HOM05D003203 ORTHO05D003526 9.2e-44 180.6 158 57.6
AT1G07910 Arabidopsis thaliana HOM05D003203 ORTHO05D003526 1.2e-43 180.3 157 56.1
EL10Ac9g22449 Beta vulgaris HOM05D003203 ORTHO05D003526 1.6e-43 179.9 158 54.4
BcaC07g41968 Brassica carinata HOM05D003203 ORTHO05D003526 1.6e-43 179.9 156 57.1
C08p50260 Brassica napus HOM05D003203 ORTHO05D003526 1.6e-43 179.9 156 57.1
BolC8t52555H Brassica oleracea HOM05D003203 ORTHO05D003526 1.6e-43 179.9 156 57.1
Hma1.2p1_0559F.1_g178620 Hydrangea macrophylla HOM05D003203 ORTHO05D003526 1.6e-43 179.9 128 66.4
ECA233G2891 Erigeron canadensis HOM05D003203 ORTHO05D003526 1.3e-42 176.8 151 52.3
Sp1g06590 Schrenkiella parvula HOM05D003203 ORTHO05D003526 1.3e-42 176.8 156 56.4
Carub.0011s0009 Capsella rubella HOM05D003203 ORTHO05D003526 3.0e-42 175.6 156 55.1
AL1G18200 Arabidopsis lyrata HOM05D003203 ORTHO05D003526 3.9e-42 175.3 156 54.5
C05p05960 Brassica napus HOM05D003203 ORTHO05D003526 5.1e-42 174.9 156 55.1
Sed0015984 Sechium edule HOM05D003203 ORTHO05D003526 5.1e-42 174.9 160 53.8
DCAR_024905 Daucus carota HOM05D003203 ORTHO05D003526 6.6e-42 174.5 158 51.9
AL6G53580 Arabidopsis lyrata HOM05D003203 ORTHO05D003526 1.1e-41 173.7 156 53.8
A06p05020 Brassica napus HOM05D003203 ORTHO05D003526 1.5e-41 173.3 156 54.5
Medtr4g060795 Medicago truncatula HOM05D003203 ORTHO05D003526 1.9e-41 172.9 158 53.8
SalBow6G0781 Salvia bowleyana HOM05D003203 ORTHO05D003526 1.9e-41 172.9 155 55.5
BraA06t23708Z Brassica rapa HOM05D003203 ORTHO05D003526 2.5e-41 172.6 156 54.5
AL7G46960 Arabidopsis lyrata HOM05D003203 ORTHO05D003526 3.3e-41 172.2 156 53.8
AL7G46970 Arabidopsis lyrata HOM05D003203 ORTHO05D003526 3.3e-41 172.2 156 53.8
Carub.0001s0725 Capsella rubella HOM05D003203 ORTHO05D003526 3.3e-41 172.2 156 53.2
BcaC05g24708 Brassica carinata HOM05D003203 ORTHO05D003526 4.3e-41 171.8 156 53.8
Zm00001eb302520 Zea mays HOM05D003203 ORTHO05D003526 4.3e-41 171.8 158 53.8
BcaB02g06702 Brassica carinata HOM05D003203 ORTHO05D003526 5.6e-41 171.4 153 54.9
COL.COLO4_32909 Corchorus olitorius HOM05D003203 ORTHO05D003526 3.6e-40 168.7 111 70.3
BolC5t29358H Brassica oleracea HOM05D003203 ORTHO05D003526 8.1e-40 167.5 150 54.7
Aa31sc36G120 Aethionema arabicum HOM05D003203 ORTHO05D003526 4.0e-39 165.2 148 55.4
SHI27633 Sapria himalayana HOM05D003203 ORTHO05D003526 4.9e-37 158.3 128 54.7
SpUn0840_0010 Schrenkiella parvula HOM05D003203 ORTHO05D003526 1.9e-36 156.4 133 58.6
TWI75G1314 Tripterygium wilfordii HOM05D003203 ORTHO05D003526 6.0e-35 151.4 134 60.4
Sp3g30710 Schrenkiella parvula HOM05D003203 ORTHO05D003526 5.1e-34 148.3 111 63.1
AagrBONN_evm.TU.Sc2ySwM_362.2654 Anthoceros agrestis HOM05D003203 ORTHO05D003526 1.8e-31 139.8 148 44.6
Mapoly0005s0012 Marchantia polymorpha HOM05D003203 ORTHO05D003526 2.0e-30 136.3 150 46.7
SMO223G0015 Selaginella moellendorffii HOM05D003203 ORTHO05D003526 2.2e-29 132.9 156 44.2
Pp3c27_2850 Physcomitrium patens HOM05D003203 ORTHO05D003526 6.4e-29 131.3 151 46.4
AagrBONN_evm.TU.Sc2ySwM_342.1 Anthoceros agrestis HOM05D003203 ORTHO05D003526 1.1e-28 130.6 141 44.7
Thhalv10023078m.g Eutrema salsugineum HOM05D003203 ORTHO05D003526 7.1e-28 127.9 132 50.0
CARHR204760 Cardamine hirsuta HOM05D003203 ORTHO05D003526 9.3e-28 127.5 158 44.3
BcaC07g41967 Brassica carinata HOM05D003203 ORTHO05D003526 1.3e-26 123.6 132 50.8
AagrBONN_evm.TU.Sc2ySwM_244.3 Anthoceros agrestis HOM05D003203 ORTHO05D003526 1.8e-26 123.2 129 45.7
SEGI_33151 Sequoiadendron giganteum HOM05D003203 ORTHO05D003526 1.8e-26 123.2 115 49.6
AagrBONN_evm.TU.Sc2ySwM_117.4033 Anthoceros agrestis HOM05D003203 ORTHO05D003526 1.3e-18 97.1 108 41.7
AagrBONN_evm.TU.Sc2ySwM_341.1 Anthoceros agrestis HOM05D003203 ORTHO05D003526 1.3e-18 97.1 108 41.7
CBR_g39406 Chara braunii HOM05D003203 ORTHO05D003526 1.8e-18 96.7 138 35.5
BcaC07g42504 Brassica carinata HOM05D003203 ORTHO05D003526 3.3e-17 92.4 93 50.5
Dinv24671 Davidia involucrata HOM05D003203 ORTHO05D003526 1.1e-15 87.4 73 56.2
CARHR007720 Cardamine hirsuta HOM05D003203 ORTHO05D003526 1.5e-14 83.6 156 34.6
Cc04_g16280 Coffea canephora HOM05D003203 ORTHO05D003526 1.3e-13 80.5 73 54.8


User provided reference genes

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