Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PSO675G8458 Papaver somniferum HOM05D004874 ORTHO05D006796 0.0e+00 2576.6 1273 100.0
PSO541G0735 Papaver somniferum HOM05D004874 ORTHO05D006796 0.0e+00 2459.5 1273 95.8
Aqoxy6G00493 Aquilegia oxysepala HOM05D004874 ORTHO05D006796 0.0e+00 1906.7 1281 73.5
Nn5g28922 Nelumbo nucifera HOM05D004874 ORTHO05D006796 0.0e+00 1897.1 1276 73.6
Dinv19497 Davidia involucrata HOM05D004874 ORTHO05D006796 0.0e+00 1864.0 1274 72.8
Thecc.01G111200 Theobroma cacao HOM05D004874 ORTHO05D006796 0.0e+00 1848.9 1272 70.9
GSVIVG01022217001 Vitis vinifera HOM05D004874 ORTHO05D006796 0.0e+00 1848.9 1274 71.5
QL06p032401 Quercus lobata HOM05D004874 ORTHO05D006796 0.0e+00 1842.4 1275 71.3
Ciclev10024728m.g Citrus clementina HOM05D004874 ORTHO05D006796 0.0e+00 1841.2 1274 71.2
CSS0018271 Camellia sinensis var. sinensis HOM05D004874 ORTHO05D006796 0.0e+00 1840.1 1274 71.1
CANSAT01G0647 Cannabis sativa HOM05D004874 ORTHO05D006796 0.0e+00 1839.7 1274 70.3
Actinidia15577 Actinidia chinensis HOM05D004874 ORTHO05D006796 0.0e+00 1832.8 1273 70.3
Atru.chr4.387 Acer truncatum HOM05D004874 ORTHO05D006796 0.0e+00 1829.7 1276 70.7
Manes.13G077640 Manihot esculenta HOM05D004874 ORTHO05D006796 0.0e+00 1828.9 1273 70.5
Gorai.011G111800 Gossypium raimondii HOM05D004874 ORTHO05D006796 0.0e+00 1818.1 1272 70.1
Potri.005G083800 Populus trichocarpa HOM05D004874 ORTHO05D006796 0.0e+00 1814.7 1276 70.1
FvH4_1g22150 Fragaria vesca HOM05D004874 ORTHO05D006796 0.0e+00 1813.9 1275 69.5
TWI74G1507 Tripterygium wilfordii HOM05D004874 ORTHO05D006796 0.0e+00 1813.9 1276 69.4
CSS0002284 Camellia sinensis var. sinensis HOM05D004874 ORTHO05D006796 0.0e+00 1812.0 1285 70.0
Glyma.06G145900 Glycine max HOM05D004874 ORTHO05D006796 0.0e+00 1812.0 1274 69.5
Phvul.009G140100 Phaseolus vulgaris HOM05D004874 ORTHO05D006796 0.0e+00 1812.0 1275 68.9
Gohir.D10G102100 Gossypium hirsutum HOM05D004874 ORTHO05D006796 0.0e+00 1810.8 1272 69.9
Rhsim10G0151300 Rhododendron simsii HOM05D004874 ORTHO05D006796 0.0e+00 1810.0 1274 70.0
Gohir.A10G086600 Gossypium hirsutum HOM05D004874 ORTHO05D006796 0.0e+00 1808.5 1272 69.8
Prupe.6G174100 Prunus persica HOM05D004874 ORTHO05D006796 0.0e+00 1801.2 1270 70.6
Glyma.04G220000 Glycine max HOM05D004874 ORTHO05D006796 0.0e+00 1800.8 1275 68.7
MD15G1333600 Malus domestica HOM05D004874 ORTHO05D006796 0.0e+00 1799.6 1270 70.0
Sabra05G0068900 Salix brachista HOM05D004874 ORTHO05D006796 0.0e+00 1795.0 1283 69.4
VMungo1309G2704 Vigna mungo HOM05D004874 ORTHO05D006796 0.0e+00 1794.6 1276 68.3
RcHm_v2.0_Chr2g0116231 Rosa chinensis HOM05D004874 ORTHO05D006796 0.0e+00 1794.2 1272 69.3
FAN23G3027 Fragaria x ananassa HOM05D004874 ORTHO05D006796 0.0e+00 1792.3 1275 68.9
Potri.007G081900 Populus trichocarpa HOM05D004874 ORTHO05D006796 0.0e+00 1790.8 1276 69.2
FAN26G2351 Fragaria x ananassa HOM05D004874 ORTHO05D006796 0.0e+00 1789.2 1275 68.9
FAN28G2703 Fragaria x ananassa HOM05D004874 ORTHO05D006796 0.0e+00 1786.5 1275 68.6
FAN19G0866 Fragaria x ananassa HOM05D004874 ORTHO05D006796 0.0e+00 1786.2 1301 67.8
Lj1g0000337 Lotus japonicus HOM05D004874 ORTHO05D006796 0.0e+00 1775.0 1275 68.0
Haze_25029 Corylus avellana HOM05D004874 ORTHO05D006796 0.0e+00 1768.1 1238 71.2
Ca_16889_v3 Cicer arietinum L. HOM05D004874 ORTHO05D006796 0.0e+00 1761.9 1271 67.9
Medtr3g094770 Medicago truncatula HOM05D004874 ORTHO05D006796 0.0e+00 1755.3 1274 67.7
ClCG01G016180 Citrullus lanatus HOM05D004874 ORTHO05D006796 0.0e+00 1748.8 1271 67.0
TPR.G23744 Trifolium pratense HOM05D004874 ORTHO05D006796 0.0e+00 1747.3 1271 66.9
TAR628G0415 Trochodendron aralioides HOM05D004874 ORTHO05D006796 0.0e+00 1738.8 1183 73.8
CsaV3_6G042450 Cucumis sativus L. HOM05D004874 ORTHO05D006796 0.0e+00 1736.9 1273 66.4
Psat5g065960 Pisum sativum HOM05D004874 ORTHO05D006796 0.0e+00 1734.9 1273 66.7
Sopen04g023580 Solanum pennellii HOM05D004874 ORTHO05D006796 0.0e+00 1734.2 1279 66.9
Solyc04g054140.4 Solanum lycopersicum HOM05D004874 ORTHO05D006796 0.0e+00 1731.8 1284 66.7
Cc07_g16070 Coffea canephora HOM05D004874 ORTHO05D006796 0.0e+00 1731.5 1275 67.4
arahy.Tifrunner.gnm1.ann1.ZQBN5H Arachis hypogaea HOM05D004874 ORTHO05D006796 0.0e+00 1728.0 1270 66.9
Lalb_Chr11g0068041 Lupinus albus HOM05D004874 ORTHO05D006796 0.0e+00 1723.8 1275 66.3
arahy.Tifrunner.gnm1.ann1.M2IALY Arachis hypogaea HOM05D004874 ORTHO05D006796 0.0e+00 1723.0 1270 66.8
Peaxi162Scf00323g00112 Petunia axillaris HOM05D004874 ORTHO05D006796 0.0e+00 1721.1 1247 67.8
CAN.G1728.1 Capsicum annuum HOM05D004874 ORTHO05D006796 0.0e+00 1718.0 1276 66.5
Manes.12G141800 Manihot esculenta HOM05D004874 ORTHO05D006796 0.0e+00 1704.9 1272 66.3
Oeu028379.4 Olea europaea HOM05D004874 ORTHO05D006796 0.0e+00 1698.3 1376 61.6
EL10Ac6g14746 Beta vulgaris HOM05D004874 ORTHO05D006796 0.0e+00 1692.6 1351 62.1
THA.LOC104804146 Tarenaya hassleriana HOM05D004874 ORTHO05D006796 0.0e+00 1687.2 1274 65.3
Migut.H02425 Erythranthe guttata HOM05D004874 ORTHO05D006796 0.0e+00 1684.8 1274 64.9
HanXRQChr14g0446191 Helianthus annuus HOM05D004874 ORTHO05D006796 0.0e+00 1684.8 1273 65.5
Eucgr.H04838 Eucalyptus grandis HOM05D004874 ORTHO05D006796 0.0e+00 1682.9 1275 65.1
ATR0564G436 Amborella trichopoda HOM05D004874 ORTHO05D006796 0.0e+00 1682.5 1293 64.8
ECA238G3208 Erigeron canadensis HOM05D004874 ORTHO05D006796 0.0e+00 1678.7 1270 65.1
Lsat_1_v5_gn_2_65401 Lactuca sativa HOM05D004874 ORTHO05D006796 0.0e+00 1674.4 1276 65.1
AUR62003312 Chenopodium quinoa HOM05D004874 ORTHO05D006796 0.0e+00 1667.9 1273 64.7
AUR62016271 Chenopodium quinoa HOM05D004874 ORTHO05D006796 0.0e+00 1662.5 1273 64.6
CARHR113090 Cardamine hirsuta HOM05D004874 ORTHO05D006796 0.0e+00 1653.3 1279 63.6
BcaC07g41106 Brassica carinata HOM05D004874 ORTHO05D006796 0.0e+00 1652.5 1279 64.0
C08p41080 Brassica napus HOM05D004874 ORTHO05D006796 0.0e+00 1652.1 1279 64.0
A09p57840 Brassica napus HOM05D004874 ORTHO05D006796 0.0e+00 1651.7 1281 64.2
Carub.0004s0115 Capsella rubella HOM05D004874 ORTHO05D006796 0.0e+00 1650.2 1276 63.6
Sed0015455 Sechium edule HOM05D004874 ORTHO05D006796 0.0e+00 1650.2 1272 64.3
BolC8t51674H Brassica oleracea HOM05D004874 ORTHO05D006796 0.0e+00 1645.6 1285 63.7
Hund19660 Selenicereus undatus HOM05D004874 ORTHO05D006796 0.0e+00 1644.4 1206 67.3
BcaB08g35028 Brassica carinata HOM05D004874 ORTHO05D006796 0.0e+00 1641.3 1278 63.6
BraA09t41177Z Brassica rapa HOM05D004874 ORTHO05D006796 0.0e+00 1640.2 1287 63.9
AT2G22010 Arabidopsis thaliana HOM05D004874 ORTHO05D006796 0.0e+00 1636.7 1281 63.3
AL4G11330 Arabidopsis lyrata HOM05D004874 ORTHO05D006796 0.0e+00 1635.2 1285 62.9
HanXRQChr10g0295251 Helianthus annuus HOM05D004874 ORTHO05D006796 0.0e+00 1634.4 1273 63.3
Sp4g01070 Schrenkiella parvula HOM05D004874 ORTHO05D006796 0.0e+00 1630.9 1276 63.2
PGR102G1404 Punica granatum HOM05D004874 ORTHO05D006796 0.0e+00 1621.7 1271 63.9
SGA_v2.0_scaffold2G01299 Striga asiatica HOM05D004874 ORTHO05D006796 0.0e+00 1616.3 1367 60.7
MELO3C007488.2 Cucumis melo HOM05D004874 ORTHO05D006796 0.0e+00 1614.0 1274 63.1
TAR376G0110 Trochodendron aralioides HOM05D004874 ORTHO05D006796 0.0e+00 1611.3 1042 76.7
SalBow6G4347 Salvia bowleyana HOM05D004874 ORTHO05D006796 0.0e+00 1602.8 1184 66.5
Lalb_Chr13g0296191 Lupinus albus HOM05D004874 ORTHO05D006796 0.0e+00 1599.7 1273 62.8
Thhalv10000015m.g Eutrema salsugineum HOM05D004874 ORTHO05D006796 0.0e+00 1588.5 1279 61.7
DCAR_014257 Daucus carota HOM05D004874 ORTHO05D006796 0.0e+00 1582.8 1277 62.2
Aa31LG7G14640 Aethionema arabicum HOM05D004874 ORTHO05D006796 0.0e+00 1548.9 1270 61.3
Zm00001eb328050 Zea mays HOM05D004874 ORTHO05D006796 0.0e+00 1541.6 1262 60.0
CDE07G0820 Ceratophyllum demersum HOM05D004874 ORTHO05D006796 0.0e+00 1516.9 1273 60.0
Nitab4.5_0000156g0190 Nicotiana tabacum HOM05D004874 ORTHO05D006796 0.0e+00 1493.4 1046 69.5
MD01G1017400 Malus domestica HOM05D004874 ORTHO05D006796 0.0e+00 1464.1 1029 70.4
PGSC0003DMG400012951 Solanum tuberosum HOM05D004874 ORTHO05D006796 0.0e+00 1446.4 1051 67.3
SEGI_33214 Sequoiadendron giganteum HOM05D004874 ORTHO05D006796 0.0e+00 1432.9 1265 56.7
CDE04G1796 Ceratophyllum demersum HOM05D004874 ORTHO05D006796 0.0e+00 1358.6 1216 57.6
Duzib147G0760 Durio zibethinus HOM05D004874 ORTHO05D006796 0.0e+00 1340.5 1270 55.5
unitig_899.g14600 Utricularia gibba HOM05D004874 ORTHO05D006796 0.0e+00 1298.5 1172 55.7
COL.COLO4_11028 Corchorus olitorius HOM05D004874 ORTHO05D006796 0.0e+00 1265.8 1269 54.4
FAN01G2715 Fragaria x ananassa HOM05D004874 ORTHO05D006796 0.0e+00 1196.4 942 63.5
MBI02_g13022_MAGBIO Magnolia biondii HOM05D004874 ORTHO05D006796 0.0e+00 1194.9 833 70.9
Lj2C562G3 Lonicera japonica HOM05D004874 ORTHO05D006796 0.0e+00 1184.1 832 69.4
Ah.02g124400 Amaranthus hybridus HOM05D004874 ORTHO05D006796 0.0e+00 1178.7 877 64.9
CiPaw.04G092800 Carya illinoinensis HOM05D004874 ORTHO05D006796 0.0e+00 1173.3 808 73.4
Mapoly0047s0138 Marchantia polymorpha HOM05D004874 ORTHO05D006796 0.0e+00 1125.2 1329 47.5
Pp3c2_2760 Physcomitrium patens HOM05D004874 ORTHO05D006796 0.0e+00 1117.8 1331 46.4
FAN06G3019 Fragaria x ananassa HOM05D004874 ORTHO05D006796 0.0e+00 1112.4 942 61.5
Cpa.g.sc196.7 Carica papaya HOM05D004874 ORTHO05D006796 0.0e+00 1106.7 831 65.7
SMO143G0116 Selaginella moellendorffii HOM05D004874 ORTHO05D006796 0.0e+00 1106.7 1200 49.5
Pp3c1_33900 Physcomitrium patens HOM05D004874 ORTHO05D006796 0.0e+00 1100.1 1296 46.3
Pp3c17_14550 Physcomitrium patens HOM05D004874 ORTHO05D006796 0.0e+00 1088.2 1331 46.1
vmacro12908 Vaccinium macrocarpon HOM05D004874 ORTHO05D006796 8.7e-312 1074.7 778 67.2
Oeu030684.1 Olea europaea HOM05D004874 ORTHO05D006796 3.6e-308 1062.0 761 67.9
FAN06G4447 Fragaria x ananassa HOM05D004874 ORTHO05D006796 1.9e-304 1049.7 942 59.1
AagrBONN_evm.TU.Sc2ySwM_228.911 Anthoceros agrestis HOM05D004874 ORTHO05D006796 4.3e-301 1038.5 1147 49.7
MSTRG.2539 Avicennia marina HOM05D004874 ORTHO05D006796 1.1e-288 997.3 761 66.0
FAN10G0201 Fragaria x ananassa HOM05D004874 ORTHO05D006796 8.1e-284 981.1 691 68.3
HPP92_016848 Vanilla planifolia HOM05D004874 ORTHO05D006796 2.7e-239 833.2 624 66.0
CBR_g4334 Chara braunii HOM05D004874 ORTHO05D006796 5.0e-225 785.8 1495 35.5
FvH4_7g04730 Fragaria vesca HOM05D004874 ORTHO05D006796 1.2e-215 754.6 552 66.1
HPP92_016847 Vanilla planifolia HOM05D004874 ORTHO05D006796 8.6e-209 731.9 606 58.7
FAN03G2613 Fragaria x ananassa HOM05D004874 ORTHO05D006796 1.8e-203 714.1 502 69.7
Oeu030685.1 Olea europaea HOM05D004874 ORTHO05D006796 2.6e-189 667.2 502 63.5
Lj2A562T49 Lonicera japonica HOM05D004874 ORTHO05D006796 1.9e-179 634.4 465 68.6
MBI02_g44126_MAGBIO Magnolia biondii HOM05D004874 ORTHO05D006796 1.1e-142 512.3 357 72.3
Cc07_g14920 Coffea canephora HOM05D004874 ORTHO05D006796 3.2e-131 474.2 394 62.7
Cpa.g.sc196.6 Carica papaya HOM05D004874 ORTHO05D006796 2.8e-127 461.1 319 71.2
Ah.02g124390 Amaranthus hybridus HOM05D004874 ORTHO05D006796 7.4e-120 436.4 334 66.2
MCO16G187 Micromonas commoda HOM05D004874 ORTHO05D006796 1.9e-99 368.6 1420 26.1
Os07g0626900 Oryza sativa ssp. japonica HOM05D004874 ORTHO05D006796 1.3e-84 319.3 260 60.8
Cre12.g519150 Chlamydomonas reinhardtii HOM05D004874 ORTHO05D006796 2.5e-83 315.1 1239 24.8
FvH4_7g04731 Fragaria vesca HOM05D004874 ORTHO05D006796 1.8e-44 186.0 153 62.7
Sabra07G0068700 Salix brachista HOM05D004874 ORTHO05D006796 6.7e-44 184.1 237 47.3
Nitab4.5_0010573g0010 Nicotiana tabacum HOM05D004874 ORTHO05D006796 9.0e-41 173.7 148 59.5
Solyc05g055570.3 Solanum lycopersicum HOM05D004874 ORTHO05D014502 3.5e-29 135.2 101 65.3
HanXRQChr11g0324541 Helianthus annuus HOM05D004874 ORTHO05D006796 3.1e-25 122.1 78 65.4
Zm00001eb137300 Zea mays HOM05D004874 ORTHO05D006796 1.4e-14 86.7 69 59.4
Nitab4.5_0000904g0190 Nicotiana tabacum HOM05D004874 ORTHO05D006796 1.6e-13 83.2 46 80.4
HanXRQChr11g0341101 Helianthus annuus HOM05D004874 ORTHO05D006796 8.8e-12 77.4 50 68.0
BcaC09g48952 Brassica carinata HOM05D004874 ORTHO05D014502 2.8e-10 72.4 53 64.2
BcaC06g36156 Brassica carinata HOM05D004874 ORTHO05D014502 6.3e-10 71.2 53 62.3
HanXRQChr12g0385291 Helianthus annuus HOM05D004874 ORTHO05D006796 1.8e-09 69.7 41 73.2
MCO11G679 Micromonas commoda HOM05D000032 ORTHO05D028824 2.4e-09 69.3 151 29.8
Pp3c19_1530 Physcomitrium patens HOM05D003906 ORTHO05D004776 3.1e-09 68.9 95 37.9
BcaC04g21885 Brassica carinata HOM05D004874 ORTHO05D014502 7.0e-09 67.8 56 57.1
PRCOL_00005975 Prasinoderma coloniale HOM05D000032 ORTHO05D028824 7.7e-08 64.3 156 30.1
C07p07140 Brassica napus HOM05D004874 ORTHO05D014502 1.7e-07 63.2 48 60.4
C09p26200 Brassica napus HOM05D004874 ORTHO05D014502 1.7e-07 63.2 48 62.5
BolC9t55523H Brassica oleracea HOM05D004874 ORTHO05D014502 1.7e-07 63.2 48 62.5
C01p44130 Brassica napus HOM05D004874 ORTHO05D014502 2.9e-07 62.4 48 60.4
A01p36370 Brassica napus HOM05D004874 ORTHO05D014502 6.5e-07 61.2 48 58.3
A02p42430 Brassica napus HOM05D004874 ORTHO05D014502 6.5e-07 61.2 48 58.3
BolC7t41133H Brassica oleracea HOM05D004874 ORTHO05D014502 6.5e-07 61.2 48 58.3
BraA01t04208Z Brassica rapa HOM05D004874 ORTHO05D014502 6.5e-07 61.2 48 58.3
BraA02t09174Z Brassica rapa HOM05D004874 ORTHO05D014502 6.5e-07 61.2 48 58.3
AagrBONN_evm.TU.Sc2ySwM_228.213 Anthoceros agrestis HOM05D004797 ORTHO05D005752 1.1e-06 60.5 215 30.2
TPR.G36840 Trifolium pratense HOM05D007621 ORTHO05D009631 1.1e-06 60.5 167 29.3
PRCOL_00002342 Prasinoderma coloniale HOM05D003906 ORTHO05D004776 1.9e-06 59.7 116 33.6
CBR_g30766 Chara braunii HOM05D000019 ORTHO05D000048 2.5e-06 59.3 88 35.2
Os03g0428000 Oryza sativa ssp. japonica HOM05D004874 ORTHO05D006796 7.2e-06 57.8 80 41.2


User provided reference genes

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