Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PSO541G0735 Papaver somniferum HOM05D004874 ORTHO05D006796 0.0e+00 2561.2 1269 100.0
PSO675G8458 Papaver somniferum HOM05D004874 ORTHO05D006796 0.0e+00 2456.0 1273 95.8
Aqoxy6G00493 Aquilegia oxysepala HOM05D004874 ORTHO05D006796 0.0e+00 1910.6 1283 73.3
Nn5g28922 Nelumbo nucifera HOM05D004874 ORTHO05D006796 0.0e+00 1895.9 1277 73.3
Dinv19497 Davidia involucrata HOM05D004874 ORTHO05D006796 0.0e+00 1873.6 1277 72.8
GSVIVG01022217001 Vitis vinifera HOM05D004874 ORTHO05D006796 0.0e+00 1854.3 1277 71.5
Ciclev10024728m.g Citrus clementina HOM05D004874 ORTHO05D006796 0.0e+00 1850.5 1275 71.9
CANSAT01G0647 Cannabis sativa HOM05D004874 ORTHO05D006796 0.0e+00 1847.0 1274 70.6
Thecc.01G111200 Theobroma cacao HOM05D004874 ORTHO05D006796 0.0e+00 1845.1 1269 70.9
QL06p032401 Quercus lobata HOM05D004874 ORTHO05D006796 0.0e+00 1841.2 1275 71.1
CSS0018271 Camellia sinensis var. sinensis HOM05D004874 ORTHO05D006796 0.0e+00 1832.4 1274 70.6
Actinidia15577 Actinidia chinensis HOM05D004874 ORTHO05D006796 0.0e+00 1827.8 1273 70.0
Manes.13G077640 Manihot esculenta HOM05D004874 ORTHO05D006796 0.0e+00 1827.8 1274 70.3
Atru.chr4.387 Acer truncatum HOM05D004874 ORTHO05D006796 0.0e+00 1824.3 1276 70.4
Glyma.06G145900 Glycine max HOM05D004874 ORTHO05D006796 0.0e+00 1818.9 1274 69.5
Gorai.011G111800 Gossypium raimondii HOM05D004874 ORTHO05D006796 0.0e+00 1817.7 1269 70.1
Potri.005G083800 Populus trichocarpa HOM05D004874 ORTHO05D006796 0.0e+00 1817.7 1276 70.3
Phvul.009G140100 Phaseolus vulgaris HOM05D004874 ORTHO05D006796 0.0e+00 1814.7 1275 68.8
TWI74G1507 Tripterygium wilfordii HOM05D004874 ORTHO05D006796 0.0e+00 1812.0 1273 69.8
Gohir.D10G102100 Gossypium hirsutum HOM05D004874 ORTHO05D006796 0.0e+00 1809.3 1269 69.7
Gohir.A10G086600 Gossypium hirsutum HOM05D004874 ORTHO05D006796 0.0e+00 1807.0 1269 69.7
Rhsim10G0151300 Rhododendron simsii HOM05D004874 ORTHO05D006796 0.0e+00 1806.2 1277 69.8
FvH4_1g22150 Fragaria vesca HOM05D004874 ORTHO05D006796 0.0e+00 1805.4 1275 69.3
Glyma.04G220000 Glycine max HOM05D004874 ORTHO05D006796 0.0e+00 1805.4 1274 68.9
CSS0002284 Camellia sinensis var. sinensis HOM05D004874 ORTHO05D006796 0.0e+00 1804.3 1285 69.5
VMungo1309G2704 Vigna mungo HOM05D004874 ORTHO05D006796 0.0e+00 1799.3 1276 68.2
Sabra05G0068900 Salix brachista HOM05D004874 ORTHO05D006796 0.0e+00 1798.5 1283 69.7
MD15G1333600 Malus domestica HOM05D004874 ORTHO05D006796 0.0e+00 1795.8 1270 69.6
RcHm_v2.0_Chr2g0116231 Rosa chinensis HOM05D004874 ORTHO05D006796 0.0e+00 1792.3 1272 69.5
Prupe.6G174100 Prunus persica HOM05D004874 ORTHO05D006796 0.0e+00 1790.4 1271 70.0
Potri.007G081900 Populus trichocarpa HOM05D004874 ORTHO05D006796 0.0e+00 1790.0 1277 69.1
FAN23G3027 Fragaria x ananassa HOM05D004874 ORTHO05D006796 0.0e+00 1785.0 1275 68.7
FAN26G2351 Fragaria x ananassa HOM05D004874 ORTHO05D006796 0.0e+00 1781.1 1275 68.6
FAN28G2703 Fragaria x ananassa HOM05D004874 ORTHO05D006796 0.0e+00 1778.1 1275 68.4
FAN19G0866 Fragaria x ananassa HOM05D004874 ORTHO05D006796 0.0e+00 1777.7 1301 67.6
Lj1g0000337 Lotus japonicus HOM05D004874 ORTHO05D006796 0.0e+00 1773.8 1274 67.9
Ca_16889_v3 Cicer arietinum L. HOM05D004874 ORTHO05D006796 0.0e+00 1765.0 1272 67.8
Medtr3g094770 Medicago truncatula HOM05D004874 ORTHO05D006796 0.0e+00 1763.4 1275 67.8
Haze_25029 Corylus avellana HOM05D004874 ORTHO05D006796 0.0e+00 1763.0 1238 70.9
ClCG01G016180 Citrullus lanatus HOM05D004874 ORTHO05D006796 0.0e+00 1750.3 1271 67.3
TAR628G0415 Trochodendron aralioides HOM05D004874 ORTHO05D006796 0.0e+00 1745.7 1184 73.8
TPR.G23744 Trifolium pratense HOM05D004874 ORTHO05D006796 0.0e+00 1744.9 1275 66.7
Solyc04g054140.4 Solanum lycopersicum HOM05D004874 ORTHO05D006796 0.0e+00 1740.3 1289 66.6
Sopen04g023580 Solanum pennellii HOM05D004874 ORTHO05D006796 0.0e+00 1738.4 1284 66.7
arahy.Tifrunner.gnm1.ann1.ZQBN5H Arachis hypogaea HOM05D004874 ORTHO05D006796 0.0e+00 1737.2 1274 66.7
Psat5g065960 Pisum sativum HOM05D004874 ORTHO05D006796 0.0e+00 1734.2 1274 66.5
arahy.Tifrunner.gnm1.ann1.M2IALY Arachis hypogaea HOM05D004874 ORTHO05D006796 0.0e+00 1732.2 1274 66.6
CsaV3_6G042450 Cucumis sativus L. HOM05D004874 ORTHO05D006796 0.0e+00 1729.9 1271 66.4
Cc07_g16070 Coffea canephora HOM05D004874 ORTHO05D006796 0.0e+00 1727.6 1280 66.6
Lalb_Chr11g0068041 Lupinus albus HOM05D004874 ORTHO05D006796 0.0e+00 1726.5 1273 66.5
CAN.G1728.1 Capsicum annuum HOM05D004874 ORTHO05D006796 0.0e+00 1725.3 1281 66.3
Peaxi162Scf00323g00112 Petunia axillaris HOM05D004874 ORTHO05D006796 0.0e+00 1725.3 1247 67.8
Manes.12G141800 Manihot esculenta HOM05D004874 ORTHO05D006796 0.0e+00 1707.2 1272 66.4
Oeu028379.4 Olea europaea HOM05D004874 ORTHO05D006796 0.0e+00 1699.5 1381 61.3
EL10Ac6g14746 Beta vulgaris HOM05D004874 ORTHO05D006796 0.0e+00 1696.4 1351 62.3
THA.LOC104804146 Tarenaya hassleriana HOM05D004874 ORTHO05D006796 0.0e+00 1689.1 1276 65.4
Eucgr.H04838 Eucalyptus grandis HOM05D004874 ORTHO05D006796 0.0e+00 1687.9 1280 65.2
ATR0564G436 Amborella trichopoda HOM05D004874 ORTHO05D006796 0.0e+00 1682.9 1290 65.0
HanXRQChr14g0446191 Helianthus annuus HOM05D004874 ORTHO05D006796 0.0e+00 1681.8 1281 64.9
ECA238G3208 Erigeron canadensis HOM05D004874 ORTHO05D006796 0.0e+00 1679.5 1273 65.2
Migut.H02425 Erythranthe guttata HOM05D004874 ORTHO05D006796 0.0e+00 1679.1 1279 64.6
Lsat_1_v5_gn_2_65401 Lactuca sativa HOM05D004874 ORTHO05D006796 0.0e+00 1667.9 1278 64.9
Carub.0004s0115 Capsella rubella HOM05D004874 ORTHO05D006796 0.0e+00 1662.5 1276 64.2
CARHR113090 Cardamine hirsuta HOM05D004874 ORTHO05D006796 0.0e+00 1660.2 1279 63.9
BcaC07g41106 Brassica carinata HOM05D004874 ORTHO05D006796 0.0e+00 1659.8 1279 64.1
A09p57840 Brassica napus HOM05D004874 ORTHO05D006796 0.0e+00 1659.8 1281 64.3
C08p41080 Brassica napus HOM05D004874 ORTHO05D006796 0.0e+00 1659.4 1279 64.0
AUR62003312 Chenopodium quinoa HOM05D004874 ORTHO05D006796 0.0e+00 1658.3 1273 64.7
AUR62016271 Chenopodium quinoa HOM05D004874 ORTHO05D006796 0.0e+00 1657.5 1273 64.6
BolC8t51674H Brassica oleracea HOM05D004874 ORTHO05D006796 0.0e+00 1652.9 1285 63.7
BcaB08g35028 Brassica carinata HOM05D004874 ORTHO05D006796 0.0e+00 1650.2 1278 63.9
AT2G22010 Arabidopsis thaliana HOM05D004874 ORTHO05D006796 0.0e+00 1648.3 1281 63.9
BraA09t41177Z Brassica rapa HOM05D004874 ORTHO05D006796 0.0e+00 1648.3 1287 63.9
Sed0015455 Sechium edule HOM05D004874 ORTHO05D006796 0.0e+00 1647.5 1272 64.5
Hund19660 Selenicereus undatus HOM05D004874 ORTHO05D006796 0.0e+00 1646.7 1223 66.6
AL4G11330 Arabidopsis lyrata HOM05D004874 ORTHO05D006796 0.0e+00 1642.1 1278 63.4
Sp4g01070 Schrenkiella parvula HOM05D004874 ORTHO05D006796 0.0e+00 1639.0 1276 63.6
HanXRQChr10g0295251 Helianthus annuus HOM05D004874 ORTHO05D006796 0.0e+00 1628.6 1273 62.8
PGR102G1404 Punica granatum HOM05D004874 ORTHO05D006796 0.0e+00 1622.8 1272 63.6
TAR376G0110 Trochodendron aralioides HOM05D004874 ORTHO05D006796 0.0e+00 1619.0 1042 76.9
SGA_v2.0_scaffold2G01299 Striga asiatica HOM05D004874 ORTHO05D006796 0.0e+00 1609.0 1367 60.2
MELO3C007488.2 Cucumis melo HOM05D004874 ORTHO05D006796 0.0e+00 1605.9 1274 62.8
SalBow6G4347 Salvia bowleyana HOM05D004874 ORTHO05D006796 0.0e+00 1605.9 1180 66.3
Lalb_Chr13g0296191 Lupinus albus HOM05D004874 ORTHO05D006796 0.0e+00 1601.3 1274 62.8
Thhalv10000015m.g Eutrema salsugineum HOM05D004874 ORTHO05D006796 0.0e+00 1595.1 1272 62.0
DCAR_014257 Daucus carota HOM05D004874 ORTHO05D006796 0.0e+00 1586.6 1280 61.9
Aa31LG7G14640 Aethionema arabicum HOM05D004874 ORTHO05D006796 0.0e+00 1554.7 1270 61.5
Zm00001eb328050 Zea mays HOM05D004874 ORTHO05D006796 0.0e+00 1529.6 1262 59.7
CDE07G0820 Ceratophyllum demersum HOM05D004874 ORTHO05D006796 0.0e+00 1515.4 1276 59.5
Nitab4.5_0000156g0190 Nicotiana tabacum HOM05D004874 ORTHO05D006796 0.0e+00 1503.0 1046 69.8
PGSC0003DMG400012951 Solanum tuberosum HOM05D004874 ORTHO05D006796 0.0e+00 1460.3 1051 67.6
MD01G1017400 Malus domestica HOM05D004874 ORTHO05D006796 0.0e+00 1452.6 1030 70.0
SEGI_33214 Sequoiadendron giganteum HOM05D004874 ORTHO05D006796 0.0e+00 1416.4 1265 56.1
CDE04G1796 Ceratophyllum demersum HOM05D004874 ORTHO05D006796 0.0e+00 1347.0 1227 56.6
Duzib147G0760 Durio zibethinus HOM05D004874 ORTHO05D006796 0.0e+00 1333.9 1268 55.2
unitig_899.g14600 Utricularia gibba HOM05D004874 ORTHO05D006796 0.0e+00 1289.6 1181 55.3
COL.COLO4_11028 Corchorus olitorius HOM05D004874 ORTHO05D006796 0.0e+00 1260.4 1269 54.0
FAN01G2715 Fragaria x ananassa HOM05D004874 ORTHO05D006796 0.0e+00 1199.5 942 63.6
MBI02_g13022_MAGBIO Magnolia biondii HOM05D004874 ORTHO05D006796 0.0e+00 1193.3 834 71.0
Ah.02g124400 Amaranthus hybridus HOM05D004874 ORTHO05D006796 0.0e+00 1184.9 877 65.5
Lj2C562G3 Lonicera japonica HOM05D004874 ORTHO05D006796 0.0e+00 1182.2 832 69.1
CiPaw.04G092800 Carya illinoinensis HOM05D004874 ORTHO05D006796 0.0e+00 1160.6 808 72.5
FAN06G3019 Fragaria x ananassa HOM05D004874 ORTHO05D006796 0.0e+00 1118.6 942 61.7
Pp3c2_2760 Physcomitrium patens HOM05D004874 ORTHO05D006796 0.0e+00 1114.0 1327 46.2
SMO143G0116 Selaginella moellendorffii HOM05D004874 ORTHO05D006796 0.0e+00 1111.7 1203 49.8
Mapoly0047s0138 Marchantia polymorpha HOM05D004874 ORTHO05D006796 0.0e+00 1111.3 1332 47.2
Cpa.g.sc196.7 Carica papaya HOM05D004874 ORTHO05D006796 0.0e+00 1107.4 831 65.8
Pp3c1_33900 Physcomitrium patens HOM05D004874 ORTHO05D006796 0.0e+00 1101.7 1296 46.2
Pp3c17_14550 Physcomitrium patens HOM05D004874 ORTHO05D006796 0.0e+00 1080.1 1324 46.4
vmacro12908 Vaccinium macrocarpon HOM05D004874 ORTHO05D006796 8.7e-312 1074.7 779 67.3
Oeu030684.1 Olea europaea HOM05D004874 ORTHO05D006796 4.0e-307 1058.5 766 67.1
FAN06G4447 Fragaria x ananassa HOM05D004874 ORTHO05D006796 4.4e-306 1055.0 942 59.2
AagrBONN_evm.TU.Sc2ySwM_228.911 Anthoceros agrestis HOM05D004874 ORTHO05D006796 1.4e-299 1033.5 1156 48.7
MSTRG.2539 Avicennia marina HOM05D004874 ORTHO05D006796 1.5e-290 1003.4 766 65.4
FAN10G0201 Fragaria x ananassa HOM05D004874 ORTHO05D006796 1.2e-282 977.2 691 68.0
HPP92_016848 Vanilla planifolia HOM05D004874 ORTHO05D006796 6.5e-241 838.6 622 66.4
CBR_g4334 Chara braunii HOM05D004874 ORTHO05D006796 1.3e-225 787.7 1498 35.5
FvH4_7g04730 Fragaria vesca HOM05D004874 ORTHO05D006796 2.3e-214 750.4 552 65.8
HPP92_016847 Vanilla planifolia HOM05D004874 ORTHO05D006796 3.6e-207 726.5 606 58.6
FAN03G2613 Fragaria x ananassa HOM05D004874 ORTHO05D006796 2.8e-204 716.8 502 69.7
Oeu030685.1 Olea europaea HOM05D004874 ORTHO05D006796 1.2e-189 668.3 502 63.3
Lj2A562T49 Lonicera japonica HOM05D004874 ORTHO05D006796 9.2e-179 632.1 466 69.1
MBI02_g44126_MAGBIO Magnolia biondii HOM05D004874 ORTHO05D006796 1.7e-140 505.0 359 70.8
Cc07_g14920 Coffea canephora HOM05D004874 ORTHO05D006796 1.9e-128 464.9 399 60.4
Cpa.g.sc196.6 Carica papaya HOM05D004874 ORTHO05D006796 4.1e-126 457.2 323 70.0
Ah.02g124390 Amaranthus hybridus HOM05D004874 ORTHO05D006796 5.3e-118 430.3 363 62.0
MCO16G187 Micromonas commoda HOM05D004874 ORTHO05D006796 4.0e-97 360.9 1330 27.1
Os07g0626900 Oryza sativa ssp. japonica HOM05D004874 ORTHO05D006796 5.4e-86 323.9 261 61.3
Cre12.g519150 Chlamydomonas reinhardtii HOM05D004874 ORTHO05D006796 3.8e-84 317.8 1230 25.4
Sabra07G0068700 Salix brachista HOM05D004874 ORTHO05D006796 2.1e-45 189.1 237 48.5
FvH4_7g04731 Fragaria vesca HOM05D004874 ORTHO05D006796 1.1e-43 183.3 153 62.1
Nitab4.5_0010573g0010 Nicotiana tabacum HOM05D004874 ORTHO05D006796 9.9e-40 170.2 152 56.6
Solyc05g055570.3 Solanum lycopersicum HOM05D004874 ORTHO05D014502 3.5e-29 135.2 101 65.3
HanXRQChr11g0324541 Helianthus annuus HOM05D004874 ORTHO05D006796 1.4e-25 123.2 78 65.4
Zm00001eb137300 Zea mays HOM05D004874 ORTHO05D006796 7.9e-13 80.9 69 58.0
Nitab4.5_0000904g0190 Nicotiana tabacum HOM05D004874 ORTHO05D006796 1.3e-12 80.1 46 76.1
HanXRQChr11g0341101 Helianthus annuus HOM05D004874 ORTHO05D006796 3.0e-12 79.0 50 68.0
BcaC09g48952 Brassica carinata HOM05D004874 ORTHO05D014502 2.8e-10 72.4 53 64.2
BcaC06g36156 Brassica carinata HOM05D004874 ORTHO05D014502 6.3e-10 71.2 53 62.3
HanXRQChr12g0385291 Helianthus annuus HOM05D004874 ORTHO05D006796 1.8e-09 69.7 41 73.2
MCO11G679 Micromonas commoda HOM05D000032 ORTHO05D028824 2.4e-09 69.3 151 29.8
Pp3c19_1530 Physcomitrium patens HOM05D003906 ORTHO05D004776 3.1e-09 68.9 95 37.9
BcaC04g21885 Brassica carinata HOM05D004874 ORTHO05D014502 6.9e-09 67.8 56 57.1
C07p07140 Brassica napus HOM05D004874 ORTHO05D014502 1.7e-07 63.2 48 60.4
C09p26200 Brassica napus HOM05D004874 ORTHO05D014502 1.7e-07 63.2 48 62.5
BolC9t55523H Brassica oleracea HOM05D004874 ORTHO05D014502 1.7e-07 63.2 48 62.5
PRCOL_00005975 Prasinoderma coloniale HOM05D000032 ORTHO05D028824 1.7e-07 63.2 156 29.5
C01p44130 Brassica napus HOM05D004874 ORTHO05D014502 2.9e-07 62.4 48 60.4
A01p36370 Brassica napus HOM05D004874 ORTHO05D014502 6.5e-07 61.2 48 58.3
A02p42430 Brassica napus HOM05D004874 ORTHO05D014502 6.5e-07 61.2 48 58.3
BolC7t41133H Brassica oleracea HOM05D004874 ORTHO05D014502 6.5e-07 61.2 48 58.3
BraA01t04208Z Brassica rapa HOM05D004874 ORTHO05D014502 6.5e-07 61.2 48 58.3
BraA02t09174Z Brassica rapa HOM05D004874 ORTHO05D014502 6.5e-07 61.2 48 58.3
AagrBONN_evm.TU.Sc2ySwM_228.213 Anthoceros agrestis HOM05D004797 ORTHO05D005752 1.1e-06 60.5 215 30.2
TPR.G36840 Trifolium pratense HOM05D007621 ORTHO05D009631 1.1e-06 60.5 167 29.3
PRCOL_00002342 Prasinoderma coloniale HOM05D003906 ORTHO05D004776 1.9e-06 59.7 116 33.6
CBR_g30766 Chara braunii HOM05D000019 ORTHO05D000048 2.5e-06 59.3 88 35.2
Os03g0428000 Oryza sativa ssp. japonica HOM05D004874 ORTHO05D006796 3.2e-06 58.9 80 42.5
unitig_899.g14599 Utricularia gibba HOM05D002815 ORTHO05D025745 4.2e-06 58.5 68 41.2


User provided reference genes

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