Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PSO478G5244 Papaver somniferum HOM05D005935 ORTHO05D007012 3.4e-86 322.0 211 100.0
PSO170G3047 Papaver somniferum HOM05D005935 ORTHO05D007012 9.9e-78 293.9 202 95.0
PSO357G0321 Papaver somniferum HOM05D005935 ORTHO05D007012 9.9e-78 293.9 202 95.0
Prupe.6G314900 Prunus persica HOM05D005935 ORTHO05D007012 4.6e-67 258.5 204 82.4
PGR031G1309 Punica granatum HOM05D005935 ORTHO05D007012 6.0e-67 258.1 196 84.7
Sed0001365 Sechium edule HOM05D005935 ORTHO05D007012 6.0e-67 258.1 204 79.9
TAR362G1094 Trochodendron aralioides HOM05D005935 ORTHO05D007012 1.7e-66 256.5 204 77.9
TAR636G0846 Trochodendron aralioides HOM05D005935 ORTHO05D007012 1.5e-65 253.4 205 84.4
MD04G1195100 Malus domestica HOM05D005935 ORTHO05D007012 5.6e-65 251.5 197 81.7
Phvul.001G225500 Phaseolus vulgaris HOM05D005935 ORTHO05D007012 5.6e-65 251.5 204 79.9
EL10Ac4g09829 Beta vulgaris HOM05D005935 ORTHO05D007012 7.3e-65 251.1 204 77.5
Glyma.19G228900 Glycine max HOM05D005935 ORTHO05D007012 7.3e-65 251.1 204 79.9
GSVIVG01031220001 Vitis vinifera HOM05D005935 ORTHO05D007012 7.3e-65 251.1 205 80.0
Zm00001eb121760 Zea mays HOM05D005935 ORTHO05D007012 7.3e-65 251.1 195 76.4
Manes.09G175700 Manihot esculenta HOM05D005935 ORTHO05D007012 1.3e-64 250.4 195 81.5
Ah.06g188880 Amaranthus hybridus HOM05D005935 ORTHO05D007012 1.6e-64 250.0 204 76.5
Eucgr.H03282 Eucalyptus grandis HOM05D005935 ORTHO05D007012 1.6e-64 250.0 195 81.0
arahy.Tifrunner.gnm1.ann1.G5WI6L Arachis hypogaea HOM05D005935 ORTHO05D007012 2.8e-64 249.2 204 79.4
arahy.Tifrunner.gnm1.ann1.H1X696 Arachis hypogaea HOM05D005935 ORTHO05D007012 2.8e-64 249.2 204 79.4
ClCG02G015080 Citrullus lanatus HOM05D005935 ORTHO05D007012 2.8e-64 249.2 204 78.4
MELO3C004198.2 Cucumis melo HOM05D005935 ORTHO05D007012 2.8e-64 249.2 204 78.4
CsaV3_2G006940 Cucumis sativus L. HOM05D005935 ORTHO05D007012 2.8e-64 249.2 204 78.4
arahy.Tifrunner.gnm1.ann1.7UDZ1N Arachis hypogaea HOM05D005935 ORTHO05D007012 3.6e-64 248.8 197 79.7
Dinv24425 Davidia involucrata HOM05D005935 ORTHO05D007012 3.6e-64 248.8 205 78.0
FvH4_6g07240 Fragaria vesca HOM05D005935 ORTHO05D007012 3.6e-64 248.8 196 80.6
CANSAT54G1507 Cannabis sativa HOM05D005935 ORTHO05D007012 6.2e-64 248.1 197 84.8
CiPaw.07G028100 Carya illinoinensis HOM05D005935 ORTHO05D007012 6.2e-64 248.1 204 77.0
Haze_04079 Corylus avellana HOM05D005935 ORTHO05D007012 6.2e-64 248.1 199 77.4
Migut.N01391 Erythranthe guttata HOM05D005935 ORTHO05D007012 8.1e-64 247.7 195 80.0
Gohir.A08G206600 Gossypium hirsutum HOM05D005935 ORTHO05D007012 1.1e-63 247.3 199 83.4
HanXRQChr10g0299201 Helianthus annuus HOM05D005935 ORTHO05D007012 1.1e-63 247.3 196 84.7
RcHm_v2.0_Chr3g0456881 Rosa chinensis HOM05D005935 ORTHO05D007012 1.1e-63 247.3 195 80.5
SGA_v2.0_scaffold80G25879 Striga asiatica HOM05D005935 ORTHO05D007012 1.1e-63 247.3 204 77.9
arahy.Tifrunner.gnm1.ann1.I9BDFC Arachis hypogaea HOM05D005935 ORTHO05D007012 1.4e-63 246.9 197 80.7
Gohir.D08G223300 Gossypium hirsutum HOM05D005935 ORTHO05D007012 1.4e-63 246.9 195 85.1
Gorai.004G237200 Gossypium raimondii HOM05D005935 ORTHO05D007012 1.4e-63 246.9 195 85.1
MSTRG.27950 Avicennia marina HOM05D005935 ORTHO05D007012 1.8e-63 246.5 204 77.5
Hma1.2p1_0008F-1.1_g005750 Hydrangea macrophylla HOM05D005935 ORTHO05D007012 1.8e-63 246.5 204 81.9
Lsat_1_v5_gn_5_102820 Lactuca sativa HOM05D005935 ORTHO05D007012 1.8e-63 246.5 196 79.6
C05p61480 Brassica napus HOM05D002110 ORTHO05D007012 2.4e-63 246.1 196 80.6
Os03g0831900 Oryza sativa ssp. japonica HOM05D005935 ORTHO05D007012 2.4e-63 246.1 196 77.6
QL01p019294 Quercus lobata HOM05D005935 ORTHO05D007012 4.0e-63 245.4 199 81.4
Ca_09298_v3 Cicer arietinum L. HOM05D005935 ORTHO05D007012 5.3e-63 245.0 204 78.9
THA.LOC104802776 Tarenaya hassleriana HOM05D005935 ORTHO05D007012 5.3e-63 245.0 197 81.2
Aqoxy2G00839 Aquilegia oxysepala HOM05D005935 ORTHO05D007012 6.9e-63 244.6 205 79.0
COL.COLO4_04140 Corchorus olitorius HOM05D005935 ORTHO05D007012 6.9e-63 244.6 195 82.6
TWI36G1229 Tripterygium wilfordii HOM05D005935 ORTHO05D007012 6.9e-63 244.6 195 83.6
SalBow3G1520 Salvia bowleyana HOM05D005935 ORTHO05D007012 9.0e-63 244.2 204 76.5
MD12G1207200 Malus domestica HOM05D005935 ORTHO05D007012 1.2e-62 243.8 197 80.2
SGA_v2.0_scaffold81G26126 Striga asiatica HOM05D005935 ORTHO05D007012 1.2e-62 243.8 204 76.5
Glyma.03G231900 Glycine max HOM05D005935 ORTHO05D007012 2.0e-62 243.0 204 77.9
TWI56G1463 Tripterygium wilfordii HOM05D005935 ORTHO05D007012 2.0e-62 243.0 196 82.7
Lalb_Chr18g0046051 Lupinus albus HOM05D005935 ORTHO05D007012 2.6e-62 242.7 205 78.5
Peaxi162Scf00673g00126 Petunia axillaris HOM05D005935 ORTHO05D007012 2.6e-62 242.7 198 78.8
Sp3g04650 Schrenkiella parvula HOM05D005935 ORTHO05D007012 2.6e-62 242.7 202 78.7
Ciclev10002528m.g Citrus clementina HOM05D005935 ORTHO05D007012 3.4e-62 242.3 196 83.7
BolC5t34806H Brassica oleracea HOM05D002110 ORTHO05D007012 4.5e-62 241.9 196 76.5
BraA05t22944Z Brassica rapa HOM05D002110 ORTHO05D007012 4.5e-62 241.9 196 78.1
Thecc.05G321000 Theobroma cacao HOM05D005935 ORTHO05D007012 4.5e-62 241.9 201 81.1
Actinidia16851 Actinidia chinensis HOM05D005935 ORTHO05D007012 5.8e-62 241.5 196 85.2
FAN05G5324 Fragaria x ananassa HOM05D005935 ORTHO05D007012 5.8e-62 241.5 205 77.1
Lj1g0021681 Lotus japonicus HOM05D005935 ORTHO05D007012 5.8e-62 241.5 197 80.7
FAN14G3557 Fragaria x ananassa HOM05D005935 ORTHO05D007012 7.6e-62 241.1 205 77.1
Atru.chr2.148 Acer truncatum HOM05D005935 ORTHO05D007012 9.9e-62 240.7 205 76.6
Potri.013G010300 Populus trichocarpa HOM05D005935 ORTHO05D007012 9.9e-62 240.7 193 83.9
VMungo1383G1193 Vigna mungo HOM05D005935 ORTHO05D007012 9.9e-62 240.7 201 78.1
BcaC05g30089 Brassica carinata HOM05D005935 ORTHO05D007012 1.7e-61 240.0 196 76.5
Cpa.g.sc48.144 Carica papaya HOM05D005935 ORTHO05D007012 1.7e-61 240.0 196 82.1
FAN02G1619 Fragaria x ananassa HOM05D005935 ORTHO05D007012 1.7e-61 240.0 205 76.6
SEGI_34613 Sequoiadendron giganteum HOM05D005935 ORTHO05D007012 1.7e-61 240.0 204 71.1
Cc02_g34830 Coffea canephora HOM05D005935 ORTHO05D007012 2.9e-61 239.2 204 75.5
Carub.0003s0513 Capsella rubella HOM05D005935 ORTHO05D007012 4.9e-61 238.4 202 77.2
CARHR080230 Cardamine hirsuta HOM05D005935 ORTHO05D007012 4.9e-61 238.4 202 77.2
AUR62000683 Chenopodium quinoa HOM05D005935 ORTHO05D007012 8.4e-61 237.7 204 77.0
AT3G05760 Arabidopsis thaliana HOM05D005935 ORTHO05D007012 1.4e-60 236.9 202 77.7
Aqoxy4G02482 Aquilegia oxysepala HOM05D005935 ORTHO05D007012 1.9e-60 236.5 205 76.6
AL3G16500 Arabidopsis lyrata HOM05D005935 ORTHO05D007012 2.4e-60 236.1 202 77.7
QL03p018299 Quercus lobata HOM05D005935 ORTHO05D007012 2.4e-60 236.1 204 77.0
ECA234G4853 Erigeron canadensis HOM05D005935 ORTHO05D007012 3.2e-60 235.7 201 79.1
CDE05G0147 Ceratophyllum demersum HOM05D005935 ORTHO05D007012 5.4e-60 235.0 195 80.5
ATR0767G209 Amborella trichopoda HOM05D005935 ORTHO05D007012 7.1e-60 234.6 197 75.6
BcaC05g29782 Brassica carinata HOM05D005935 ORTHO05D007012 7.1e-60 234.6 196 78.1
Lalb_Chr04g0260471 Lupinus albus HOM05D005935 ORTHO05D007012 7.1e-60 234.6 205 70.2
CDE11G0767 Ceratophyllum demersum HOM05D005935 ORTHO05D007012 9.3e-60 234.2 195 80.0
Solyc01g100330.3 Solanum lycopersicum HOM05D005935 ORTHO05D007012 1.2e-59 233.8 202 74.8
Sopen01g043840 Solanum pennellii HOM05D005935 ORTHO05D007012 1.2e-59 233.8 202 74.8
PGSC0003DMG400002806 Solanum tuberosum HOM05D005935 ORTHO05D007012 2.7e-59 232.6 202 74.3
Sc09g0002670 Simmondsia chinensis HOM05D005935 ORTHO05D007012 3.5e-59 232.3 204 77.9
unitig_21.g20172 Utricularia gibba HOM05D005935 ORTHO05D007012 3.5e-59 232.3 196 76.5
Medtr7g112060 Medicago truncatula HOM05D005935 ORTHO05D007012 6.0e-59 231.5 196 79.6
CAN.G1715.16 Capsicum annuum HOM05D005935 ORTHO05D007012 7.9e-59 231.1 202 75.7
Pp3c4_20180 Physcomitrium patens HOM05D005935 ORTHO05D007012 1.3e-58 230.3 200 76.0
Psat3g013040 Pisum sativum HOM05D005935 ORTHO05D007012 1.8e-58 229.9 199 75.4
Nn3g21642 Nelumbo nucifera HOM05D005935 ORTHO05D007012 5.1e-58 228.4 195 75.4
vmacro01555 Vaccinium macrocarpon HOM05D005935 ORTHO05D007012 5.1e-58 228.4 247 64.4
Duzib128G1094 Durio zibethinus HOM05D005935 ORTHO05D007012 3.7e-56 222.2 145 83.4
FAN09G4449 Fragaria x ananassa HOM05D005935 ORTHO05D007012 3.7e-56 222.2 146 78.8
Nitab4.5_0013342g0020 Nicotiana tabacum HOM05D000001 ORTHO05D004269 6.2e-56 221.5 206 72.3
HPP92_015241 Vanilla planifolia HOM05D005935 ORTHO05D007012 6.2e-56 221.5 201 79.1
DCAR_005416 Daucus carota HOM05D005935 ORTHO05D007012 1.8e-55 219.9 181 80.7
Aa31LG5G16170 Aethionema arabicum HOM05D005935 ORTHO05D007012 2.4e-55 219.5 213 61.0
Nitab4.5_0000155g0010 Nicotiana tabacum HOM05D005935 ORTHO05D007012 1.2e-54 217.2 204 70.6
Mapoly0111s0002 Marchantia polymorpha HOM05D005935 ORTHO05D007012 2.0e-54 216.5 205 70.2
CSS0047945 Camellia sinensis var. sinensis HOM05D005935 ORTHO05D007012 7.6e-54 214.5 160 86.9
TPR.G1633 Trifolium pratense HOM05D005935 ORTHO05D007012 1.3e-53 213.8 197 70.6
Thhalv10022198m.g Eutrema salsugineum HOM05D005935 ORTHO05D007012 7.1e-52 208.0 277 55.6
AUR62005273 Chenopodium quinoa HOM05D005935 ORTHO05D007012 8.7e-50 201.1 197 74.1
AagrBONN_evm.TU.Sc2ySwM_344.1201 Anthoceros agrestis HOM05D005935 ORTHO05D007012 2.1e-48 196.4 146 67.8
AagrBONN_evm.TU.Sc2ySwM_228.1845 Anthoceros agrestis HOM05D005935 ORTHO05D007012 1.4e-47 193.7 143 67.8
Hund07136 Selenicereus undatus HOM05D005935 ORTHO05D007012 6.9e-47 191.4 298 52.7
AagrBONN_evm.TU.Sc2ySwM_368.1862 Anthoceros agrestis HOM05D005935 ORTHO05D007012 2.0e-46 189.9 140 69.3
SMO201G0167 Selaginella moellendorffii HOM05D005935 ORTHO05D007012 3.4e-46 189.1 205 58.0
Lj5A336T44 Lonicera japonica HOM05D005935 ORTHO05D007012 2.2e-45 186.4 113 81.4
Nitab4.5_0000368g0260 Nicotiana tabacum HOM05D005935 ORTHO05D007012 1.4e-44 183.7 202 60.9
Pp3c12_7700 Physcomitrium patens HOM05D005935 ORTHO05D007012 9.3e-44 181.0 161 77.0
Hund21747 Selenicereus undatus HOM05D005935 ORTHO05D007012 1.2e-43 180.6 204 64.7
CSS0009551 Camellia sinensis var. sinensis HOM05D005935 ORTHO05D007012 1.3e-42 177.2 197 68.5
Rhsim11G0094200 Rhododendron simsii HOM05D005935 ORTHO05D007012 2.3e-42 176.4 195 52.8
CSS0024691 Camellia sinensis var. sinensis HOM05D005935 ORTHO05D007012 7.7e-38 161.4 142 66.2
Oeu013219.2 Olea europaea HOM05D005935 ORTHO05D007012 6.5e-37 158.3 228 61.8
RcHm_v2.0_Chr7g0179971 Rosa chinensis HOM05D005935 ORTHO05D007012 7.9e-35 151.4 129 60.5
Sabra13G0008800 Salix brachista HOM05D005935 ORTHO05D007012 2.5e-33 146.4 223 46.2
Nitab4.5_0007747g0010 Nicotiana tabacum HOM05D005935 ORTHO05D007012 1.7e-32 143.7 123 81.3
CSS0031844 Camellia sinensis var. sinensis HOM05D005935 ORTHO05D007012 2.8e-32 142.9 126 65.1
CBR_g38440 Chara braunii HOM05D005935 ORTHO05D007012 1.5e-30 137.1 205 45.9
Cre07.g341650 Chlamydomonas reinhardtii HOM05D005935 ORTHO05D007012 1.7e-29 133.7 229 49.8
CSS0034550 Camellia sinensis var. sinensis HOM05D005935 ORTHO05D007012 6.5e-29 131.7 213 56.3
Actinidia35528 Actinidia chinensis HOM05D005935 ORTHO05D007012 2.6e-25 119.8 277 47.7
FAN04G2955 Fragaria x ananassa HOM05D005935 ORTHO05D007012 1.0e-21 107.8 148 43.2
MCO03G264 Micromonas commoda HOM05D005935 ORTHO05D007012 2.3e-18 96.7 212 39.6
Zm00001eb307900 Zea mays HOM05D005935 ORTHO05D007012 2.2e-16 90.1 95 73.7
Zm00001eb114570 Zea mays HOM05D005935 ORTHO05D007012 7.0e-15 85.1 90 74.4
PRCOL_00000245 Prasinoderma coloniale HOM05D005935 ORTHO05D007012 5.0e-13 79.0 212 33.5
Zm00001eb180860 Zea mays HOM05D005935 ORTHO05D007012 8.8e-10 68.2 45 80.0
Cfa024511 Carpinus fangiana HOM05D005935 ORTHO05D007012 4.5e-06 55.8 159 27.0


User provided reference genes

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