Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PSO478G0587 Papaver somniferum HOM05D003148 ORTHO05D003894 1.1e-286 989.2 490 100.0
PSO017G6339 Papaver somniferum HOM05D003148 ORTHO05D003894 1.4e-255 885.9 543 83.4
PSO675G7850 Papaver somniferum HOM05D003148 ORTHO05D003894 1.3e-160 570.5 633 51.7
PSO541G1561 Papaver somniferum HOM05D003148 ORTHO05D003894 1.1e-159 567.4 623 52.2
TAR624G0080 Trochodendron aralioides HOM05D003148 ORTHO05D003894 5.6e-124 448.7 386 60.4
TAR626G0663 Trochodendron aralioides HOM05D003148 ORTHO05D003894 2.1e-123 446.8 398 59.0
Nn1g07107 Nelumbo nucifera HOM05D003148 ORTHO05D003894 3.7e-120 436.0 394 57.9
MBI02_g28334_MAGBIO Magnolia biondii HOM05D003148 ORTHO05D003894 3.2e-119 433.0 397 56.2
Aqoxy3G04136 Aquilegia oxysepala HOM05D003148 ORTHO05D003894 7.1e-119 431.8 393 56.2
Dinv40737 Davidia involucrata HOM05D003148 ORTHO05D003894 1.5e-116 424.1 389 56.0
Nitab4.5_0000622g0240 Nicotiana tabacum HOM05D003148 ORTHO05D003894 3.3e-116 422.9 356 59.0
Lj1C869T19 Lonicera japonica HOM05D003148 ORTHO05D003894 7.3e-116 421.8 365 59.2
CDE05G0870 Ceratophyllum demersum HOM05D003148 ORTHO05D003894 1.6e-115 420.6 399 54.6
Nitab4.5_0013016g0020 Nicotiana tabacum HOM05D003148 ORTHO05D003894 1.6e-115 420.6 354 58.8
Hma1.2p1_0938F.1_g239220 Hydrangea macrophylla HOM05D003148 ORTHO05D003894 2.1e-115 420.2 384 55.7
Ciclev10007282m.g Citrus clementina HOM05D003148 ORTHO05D003894 1.4e-114 417.5 316 63.9
ATR0752G224 Amborella trichopoda HOM05D003148 ORTHO05D003894 2.3e-114 416.8 314 65.6
HanXRQChr05g0159091 Helianthus annuus HOM05D003148 ORTHO05D003894 3.1e-114 416.4 380 56.8
Lj8A168T100 Lonicera japonica HOM05D003148 ORTHO05D003894 3.1e-114 416.4 319 63.6
Ah.13g076880 Amaranthus hybridus HOM05D001433 ORTHO05D005172 5.2e-114 415.6 314 62.4
RhsimUnG0252100 Rhododendron simsii HOM05D003148 ORTHO05D003894 6.8e-114 415.2 323 61.6
CSS0048264 Camellia sinensis var. sinensis HOM05D003148 ORTHO05D003894 2.0e-113 413.7 375 55.2
Lsat_1_v5_gn_1_29100 Lactuca sativa HOM05D003148 ORTHO05D003894 2.0e-113 413.7 322 63.0
QL08p011843 Quercus lobata HOM05D003148 ORTHO05D003894 2.0e-113 413.7 319 63.0
Actinidia09911 Actinidia chinensis HOM05D003148 ORTHO05D003894 2.6e-113 413.3 382 56.5
Nitab4.5_0000397g0350 Nicotiana tabacum HOM05D003148 ORTHO05D003894 2.6e-113 413.3 367 56.9
PGR083G0390 Punica granatum HOM05D003148 ORTHO05D003894 2.6e-113 413.3 367 56.9
Oeu042923.1 Olea europaea HOM05D003148 ORTHO05D003894 3.4e-113 412.9 336 59.8
Oeu062599.1 Olea europaea HOM05D003148 ORTHO05D003894 3.4e-113 412.9 396 53.8
DCAR_022553 Daucus carota HOM05D003148 ORTHO05D003894 5.8e-113 412.1 380 56.8
AUR62018343 Chenopodium quinoa HOM05D003148 ORTHO05D003894 9.9e-113 411.4 314 63.1
COL.COLO4_09635 Corchorus olitorius HOM05D003148 ORTHO05D003894 1.3e-112 411.0 457 50.1
MD11G1221900 Malus domestica HOM05D003148 ORTHO05D003894 1.3e-112 411.0 363 56.7
Rhsim04G0002300 Rhododendron simsii HOM05D003148 ORTHO05D003894 1.3e-112 411.0 314 61.8
Gorai.002G086900 Gossypium raimondii HOM05D003148 ORTHO05D003894 2.2e-112 410.2 407 52.8
MSTRG.14430 Avicennia marina HOM05D003148 ORTHO05D003894 2.9e-112 409.8 398 53.8
SGA_v2.0_scaffold9G05063 Striga asiatica HOM05D003148 ORTHO05D003894 3.7e-112 409.5 393 55.2
GSVIVG01014163001 Vitis vinifera HOM05D003148 ORTHO05D003894 3.7e-112 409.5 365 56.4
Gohir.A01G078100 Gossypium hirsutum HOM05D003148 ORTHO05D003894 4.9e-112 409.1 316 63.9
Cc05_g13530 Coffea canephora HOM05D003148 ORTHO05D003894 8.4e-112 408.3 363 57.0
Sed0003151 Sechium edule HOM05D003148 ORTHO05D003894 8.4e-112 408.3 316 63.0
FAN16G3453 Fragaria x ananassa HOM05D003148 ORTHO05D003894 1.1e-111 407.9 361 56.2
Peaxi162Scf00450g00842 Petunia axillaris HOM05D003148 ORTHO05D003894 1.1e-111 407.9 315 63.5
vmacro09733 Vaccinium macrocarpon HOM05D003148 ORTHO05D003894 1.4e-111 407.5 327 59.9
Actinidia35330 Actinidia chinensis HOM05D003148 ORTHO05D003894 2.4e-111 406.8 317 60.9
CSS0002581 Camellia sinensis var. sinensis HOM05D003148 ORTHO05D003894 3.2e-111 406.4 372 57.5
Manes.14G165664 Manihot esculenta HOM05D003148 ORTHO05D003894 3.2e-111 406.4 317 60.9
RcHm_v2.0_Chr5g0038301 Rosa chinensis HOM05D003148 ORTHO05D003894 3.2e-111 406.4 367 55.6
Solyc07g064330.3 Solanum lycopersicum HOM05D003148 ORTHO05D003894 3.2e-111 406.4 315 62.9
FvH4_3g22230 Fragaria vesca HOM05D003148 ORTHO05D003894 4.1e-111 406.0 361 56.2
Gohir.D01G065200 Gossypium hirsutum HOM05D003148 ORTHO05D003894 4.1e-111 406.0 407 52.6
EL10Ac3g07232 Beta vulgaris HOM05D003148 ORTHO05D003894 5.4e-111 405.6 314 61.5
Rhsim06G0215400 Rhododendron simsii HOM05D003148 ORTHO05D003894 5.4e-111 405.6 396 53.5
CiPaw.12G128200 Carya illinoinensis HOM05D003148 ORTHO05D003894 7.1e-111 405.2 360 56.9
Aqoxy1G03292 Aquilegia oxysepala HOM05D003148 ORTHO05D003894 9.2e-111 404.8 340 60.0
FAN21G1173 Fragaria x ananassa HOM05D003148 ORTHO05D003894 9.2e-111 404.8 361 55.7
ECA246G3119 Erigeron canadensis HOM05D003148 ORTHO05D003894 1.6e-110 404.1 314 62.7
Sopen07g032480 Solanum pennellii HOM05D003148 ORTHO05D003894 1.6e-110 404.1 315 62.5
CAN.G337.107 Capsicum annuum HOM05D003148 ORTHO05D003894 2.7e-110 403.3 312 63.1
FAN11G2520 Fragaria x ananassa HOM05D003148 ORTHO05D003894 3.5e-110 402.9 405 52.6
Thecc.07G043600 Theobroma cacao HOM05D003148 ORTHO05D003894 6.0e-110 402.1 389 54.0
PGSC0003DMG402013919 Solanum tuberosum HOM05D003148 ORTHO05D003894 7.8e-110 401.7 369 56.9
CsaV3_3G005270 Cucumis sativus L. HOM05D003148 ORTHO05D003894 1.3e-109 401.0 316 62.0
CARHR096300 Cardamine hirsuta HOM05D003148 ORTHO05D003894 1.7e-109 400.6 404 53.0
Duzib213G0065 Durio zibethinus HOM05D003148 ORTHO05D003894 1.7e-109 400.6 316 62.0
THA.LOC104817879 Tarenaya hassleriana HOM05D003148 ORTHO05D003894 1.7e-109 400.6 369 54.7
Hund24589 Selenicereus undatus HOM05D003148 ORTHO05D003894 6.6e-109 398.7 314 60.2
vmacro11740 Vaccinium macrocarpon HOM05D003148 ORTHO05D003894 6.6e-109 398.7 350 58.0
Aa31LG8G7340 Aethionema arabicum HOM05D003148 ORTHO05D003894 1.9e-108 397.1 316 60.8
Hund19099 Selenicereus undatus HOM05D003148 ORTHO05D003894 2.5e-108 396.7 314 60.5
TWI38G0810 Tripterygium wilfordii HOM05D003148 ORTHO05D003894 2.5e-108 396.7 391 54.7
Sp3g18540 Schrenkiella parvula HOM05D003148 ORTHO05D003894 7.3e-108 395.2 384 53.9
Thhalv10019969m.g Eutrema salsugineum HOM05D003148 ORTHO05D003894 9.6e-108 394.8 319 60.5
Haze_09651 Corylus avellana HOM05D003148 ORTHO05D003894 1.2e-107 394.4 392 54.1
BolC5t33096H Brassica oleracea HOM05D003148 ORTHO05D003894 2.1e-107 393.7 316 61.7
Cfa020382 Carpinus fangiana HOM05D003148 ORTHO05D003894 2.1e-107 393.7 391 53.2
Eucgr.F00964 Eucalyptus grandis HOM05D003148 ORTHO05D003894 2.1e-107 393.7 316 60.8
Sc19g0008220 Simmondsia chinensis HOM05D003148 ORTHO05D003894 2.8e-107 393.3 318 59.1
MELO3C025395.2 Cucumis melo HOM05D003148 ORTHO05D003894 3.6e-107 392.9 376 54.8
Os08g0175600 Oryza sativa ssp. japonica HOM05D003148 ORTHO05D003894 3.6e-107 392.9 300 63.3
Potri.001G421300 Populus trichocarpa HOM05D003148 ORTHO05D003894 3.6e-107 392.9 391 52.7
Sabra16G0286100 Salix brachista HOM05D003148 ORTHO05D003894 3.6e-107 392.9 316 60.1
Prupe.4G209500 Prunus persica HOM05D003148 ORTHO05D003894 6.2e-107 392.1 419 49.4
ClCG10G005550 Citrullus lanatus HOM05D003148 ORTHO05D003894 8.1e-107 391.7 316 60.4
Os08g0175300 Oryza sativa ssp. japonica HOM05D003148 ORTHO05D003894 8.1e-107 391.7 318 60.7
MSTRG.12966 Avicennia marina HOM05D003148 ORTHO05D003894 1.1e-106 391.3 423 48.9
Glyma.02G289700 Glycine max HOM05D003148 ORTHO05D003894 1.4e-106 391.0 408 51.2
Potri.011G136900 Populus trichocarpa HOM05D003148 ORTHO05D003894 3.1e-106 389.8 379 54.1
Migut.H01840 Erythranthe guttata HOM05D003148 ORTHO05D003894 5.2e-106 389.0 357 54.9
A05p19930 Brassica napus HOM05D003148 ORTHO05D003894 6.8e-106 388.7 386 53.1
C05p43810 Brassica napus HOM05D003148 ORTHO05D003894 6.8e-106 388.7 316 61.1
BraA05t20898Z Brassica rapa HOM05D003148 ORTHO05D003894 6.8e-106 388.7 386 53.1
AUR62030324 Chenopodium quinoa HOM05D003148 ORTHO05D003894 1.2e-105 387.9 425 49.2
arahy.Tifrunner.gnm1.ann1.5UV8SN Arachis hypogaea HOM05D003148 ORTHO05D003894 1.5e-105 387.5 316 60.8
A05p28320 Brassica napus HOM05D003148 ORTHO05D003894 1.5e-105 387.5 316 61.1
BraA05t21714Z Brassica rapa HOM05D003148 ORTHO05D003894 1.5e-105 387.5 316 61.1
C05p33280 Brassica napus HOM05D003148 ORTHO05D003894 2.0e-105 387.1 386 52.6
BolC5t32054H Brassica oleracea HOM05D003148 ORTHO05D003894 2.0e-105 387.1 386 52.6
Aa31LG10G3300 Aethionema arabicum HOM05D003148 ORTHO05D003894 2.6e-105 386.7 316 59.5
Carub.0001s3979 Capsella rubella HOM05D003148 ORTHO05D003894 2.6e-105 386.7 388 52.3
BcaB02g11185 Brassica carinata HOM05D003148 ORTHO05D003894 3.4e-105 386.3 386 52.3
CARHR040890 Cardamine hirsuta HOM05D003148 ORTHO05D003894 3.4e-105 386.3 386 52.6
Thhalv10011195m.g Eutrema salsugineum HOM05D003148 ORTHO05D003894 3.4e-105 386.3 360 55.0
AL1G58530 Arabidopsis lyrata HOM05D003148 ORTHO05D003894 4.4e-105 386.0 388 53.1
Glyma.14G025300 Glycine max HOM05D003148 ORTHO05D003894 4.4e-105 386.0 406 51.0
Sp1g37600 Schrenkiella parvula HOM05D003148 ORTHO05D003894 5.8e-105 385.6 386 52.8
Lj4g0014990 Lotus japonicus HOM05D003148 ORTHO05D003894 9.9e-105 384.8 316 61.1
AT1G50840 Arabidopsis thaliana HOM05D003148 ORTHO05D003894 1.3e-104 384.4 404 51.5
BcaC05g27391 Brassica carinata HOM05D003148 ORTHO05D003894 1.3e-104 384.4 386 52.3
AL3G34360 Arabidopsis lyrata HOM05D003148 ORTHO05D003894 3.8e-104 382.9 385 52.5
Ca_06307_v3 Cicer arietinum L. HOM05D003148 ORTHO05D003894 3.8e-104 382.9 377 52.8
Atru.chr6.8 Acer truncatum HOM05D003148 ORTHO05D003894 6.4e-104 382.1 304 62.2
Zm00001eb414740 Zea mays HOM05D003148 ORTHO05D003894 6.4e-104 382.1 360 54.4
AT3G20540 Arabidopsis thaliana HOM05D003148 ORTHO05D003894 1.1e-103 381.3 383 52.2
Medtr5g092100 Medicago truncatula HOM05D003148 ORTHO05D003894 3.2e-103 379.8 394 51.5
Carub.0003s2050 Capsella rubella HOM05D003148 ORTHO05D003894 4.2e-103 379.4 380 52.1
Lj6g0019529 Lotus japonicus HOM05D003148 ORTHO05D003894 2.1e-102 377.1 381 51.4
Phvul.008G265700 Phaseolus vulgaris HOM05D003148 ORTHO05D003894 7.8e-102 375.2 316 59.8
VMungo0647G1963 Vigna mungo HOM05D003148 ORTHO05D003894 1.3e-101 374.4 316 59.2
Zm00001eb431790 Zea mays HOM05D003148 ORTHO05D003894 3.0e-101 373.2 362 53.9
Atru.chr2.3280 Acer truncatum HOM05D003148 ORTHO05D003894 3.9e-101 372.9 310 61.0
Haze_09649 Corylus avellana HOM05D003148 ORTHO05D003894 3.9e-101 372.9 316 58.2
Psat2g015200 Pisum sativum HOM05D003148 ORTHO05D003894 3.9e-101 372.9 316 58.2
Lalb_Chr04g0248571 Lupinus albus HOM05D003148 ORTHO05D003894 6.6e-101 372.1 389 51.4
TPR.G29117 Trifolium pratense HOM05D003148 ORTHO05D003894 6.6e-101 372.1 382 51.0
arahy.Tifrunner.gnm1.ann1.FV4ICK Arachis hypogaea HOM05D003148 ORTHO05D003894 4.3e-100 369.4 403 49.1
Ca_14812_v3 Cicer arietinum L. HOM05D003148 ORTHO05D003894 4.3e-100 369.4 387 50.1
Lalb_Chr18g0049911 Lupinus albus HOM05D003148 ORTHO05D003894 4.3e-100 369.4 319 57.4
TPR.G16585 Trifolium pratense HOM05D003148 ORTHO05D003894 1.6e-99 367.5 391 50.6
Cfa020383 Carpinus fangiana HOM05D003148 ORTHO05D003894 2.8e-99 366.7 316 57.9
Sabra11G0122800 Salix brachista HOM05D003148 ORTHO05D003894 2.8e-99 366.7 375 51.2
Medtr3g050110 Medicago truncatula HOM05D003148 ORTHO05D003894 4.8e-99 365.9 380 50.3
Medtr3g050140 Medicago truncatula HOM05D003148 ORTHO05D003894 6.2e-99 365.5 380 50.3
arahy.Tifrunner.gnm1.ann1.IVZB0M Arachis hypogaea HOM05D003148 ORTHO05D003894 1.1e-98 364.8 331 57.1
Psat5g183240 Pisum sativum HOM05D003148 ORTHO05D003894 1.8e-98 364.0 407 49.4
Glyma.08G313400 Glycine max HOM05D003148 ORTHO05D003894 2.0e-97 360.5 316 56.3
Cpa.g.sc97.33 Carica papaya HOM05D003148 ORTHO05D003894 3.8e-96 356.3 277 62.1
Phvul.006G039400 Phaseolus vulgaris HOM05D003148 ORTHO05D003894 1.1e-95 354.8 399 49.6
Lj6A79G4 Lonicera japonica HOM05D003148 ORTHO05D003894 2.4e-95 353.6 300 58.0
SEGI_28554 Sequoiadendron giganteum HOM05D003148 ORTHO05D003894 4.6e-94 349.4 314 55.1
arahy.Tifrunner.gnm1.ann1.SAW44B Arachis hypogaea HOM05D003148 ORTHO05D003894 6.0e-94 349.0 421 46.1
Pp3c24_16390 Physcomitrium patens HOM05D003148 ORTHO05D003894 1.8e-85 320.9 316 51.9
SMO356G0432 Selaginella moellendorffii HOM05D003148 ORTHO05D003894 5.1e-85 319.3 330 48.5
Pp3c8_21620 Physcomitrium patens HOM05D003148 ORTHO05D003894 1.3e-83 314.7 318 49.1
SHI31845 Sapria himalayana HOM05D003148 ORTHO05D003894 3.7e-83 313.2 400 44.2
CBR_g50948 Chara braunii HOM05D003148 ORTHO05D003894 1.1e-82 311.6 327 48.9
AagrBONN_evm.TU.Sc2ySwM_228.5326 Anthoceros agrestis HOM05D003148 ORTHO05D003894 5.3e-82 309.3 403 45.2
Pp3c14_14550 Physcomitrium patens HOM05D003148 ORTHO05D003894 2.6e-81 307.0 318 50.0
CDE01G0619 Ceratophyllum demersum HOM05D003148 ORTHO05D003894 1.7e-80 304.3 269 56.9
Mapoly0039s0093 Marchantia polymorpha HOM05D003148 ORTHO05D003894 3.3e-76 290.0 322 47.2
Duzib170G0320 Durio zibethinus HOM05D003148 ORTHO05D003894 1.7e-72 277.7 213 63.8
unitig_52.g17354 Utricularia gibba HOM05D003148 ORTHO05D003894 1.4e-71 274.6 346 46.0
MCO10G006 Micromonas commoda HOM05D003148 ORTHO05D003894 3.4e-65 253.4 424 37.7
CiPaw.11G187400 Carya illinoinensis HOM05D003148 ORTHO05D003894 3.3e-60 236.9 226 54.0
Glyma.19G036300 Glycine max HOM05D003148 ORTHO05D003894 9.7e-60 235.3 226 54.9
Eucgr.F00930 Eucalyptus grandis HOM05D003148 ORTHO05D003894 4.8e-59 233.0 258 48.1
HPP92_009351 Vanilla planifolia HOM05D003148 ORTHO05D003894 5.3e-58 229.6 178 65.2
SEGI_31566 Sequoiadendron giganteum HOM05D003148 ORTHO05D003894 4.8e-51 206.5 238 46.2
PRCOL_00004837 Prasinoderma coloniale HOM05D003148 ORTHO05D003894 5.7e-44 183.0 404 32.7
TAR624G0017 Trochodendron aralioides HOM05D003148 ORTHO05D026836 1.0e-40 172.2 121 70.2
PRCOL_00004766 Prasinoderma coloniale HOM05D003148 ORTHO05D003894 3.4e-36 157.1 418 29.7
Lsat_1_v5_gn_6_61201 Lactuca sativa HOM05D003148 ORTHO05D026836 3.7e-35 153.7 153 49.0
Lj6A83T13 Lonicera japonica HOM05D003148 ORTHO05D003894 3.5e-33 147.1 208 39.9
Os04g0637400 Oryza sativa ssp. japonica HOM05D003148 ORTHO05D003894 1.3e-32 145.2 121 53.7
Cre08.g363837 Chlamydomonas reinhardtii HOM05D003148 ORTHO05D003894 2.3e-29 134.4 485 25.4
HPP92_009350 Vanilla planifolia HOM05D003148 ORTHO05D003894 3.0e-29 134.0 98 62.2
CiPaw.11G187500 Carya illinoinensis HOM05D003148 ORTHO05D003894 6.6e-24 116.3 69 72.5
Ciclev10008272m.g Citrus clementina HOM05D003148 ORTHO05D003894 8.6e-24 115.9 65 78.5
AL3G41470 Arabidopsis lyrata HOM05D003148 ORTHO05D026836 1.2e-12 79.0 58 67.2
Lju760A7G19 Lonicera japonica HOM05D003148 ORTHO05D026836 1.2e-12 79.0 71 53.5
FAN25G2336 Fragaria x ananassa HOM05D003148 ORTHO05D003894 8.3e-11 72.8 125 36.0
COL.COLO4_09803 Corchorus olitorius HOM05D021535 ORTHO05D000431 3.6e-06 57.4 38 63.2


User provided reference genes

Program Settings