Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PSO339G3791 Papaver somniferum HOM05D004763 ORTHO05D007492 0.0e+00 1318.9 673 100.0
TAR623G1126 Trochodendron aralioides HOM05D004763 ORTHO05D007492 0.0e+00 1151.0 675 86.4
Hma1.2p1_1169F.1_g263300 Hydrangea macrophylla HOM05D004763 ORTHO05D007492 0.0e+00 1145.6 674 85.9
GSVIVG01025336001 Vitis vinifera HOM05D004763 ORTHO05D007492 0.0e+00 1142.5 675 85.9
Nn7g36058 Nelumbo nucifera HOM05D004763 ORTHO05D007492 0.0e+00 1138.3 676 86.2
CSS0044360 Camellia sinensis var. sinensis HOM05D004763 ORTHO05D007492 0.0e+00 1133.6 670 85.8
Dinv36304 Davidia involucrata HOM05D004763 ORTHO05D007492 0.0e+00 1132.5 675 84.9
Gohir.A13G215400 Gossypium hirsutum HOM05D004763 ORTHO05D007492 0.0e+00 1129.8 664 85.7
MELO3C014639.2 Cucumis melo HOM05D004763 ORTHO05D007492 0.0e+00 1128.2 672 85.4
Aqoxy1G00185 Aquilegia oxysepala HOM05D004763 ORTHO05D007492 0.0e+00 1124.4 673 84.5
CsaV3_4G023800 Cucumis sativus L. HOM05D004763 ORTHO05D007492 0.0e+00 1122.8 672 84.8
Gorai.013G250000 Gossypium raimondii HOM05D004763 ORTHO05D007492 0.0e+00 1122.8 668 85.3
Hund22081 Selenicereus undatus HOM05D004763 ORTHO05D007492 0.0e+00 1122.5 674 83.5
QL01p006243 Quercus lobata HOM05D004763 ORTHO05D007492 0.0e+00 1121.3 673 84.8
Sc09g0000480 Simmondsia chinensis HOM05D004763 ORTHO05D007492 0.0e+00 1121.3 676 84.0
CiPaw.14G125100 Carya illinoinensis HOM05D004763 ORTHO05D007492 0.0e+00 1118.2 673 83.4
CANSAT54G1729 Cannabis sativa HOM05D004763 ORTHO05D007492 0.0e+00 1117.8 677 84.0
Gohir.D13G219100 Gossypium hirsutum HOM05D004763 ORTHO05D007492 0.0e+00 1117.8 668 84.9
Thecc.09G223100 Theobroma cacao HOM05D004763 ORTHO05D007492 0.0e+00 1114.8 670 84.5
TWI34G0672 Tripterygium wilfordii HOM05D004763 ORTHO05D007492 0.0e+00 1114.0 675 83.4
Manes.14G014500 Manihot esculenta HOM05D004763 ORTHO05D007492 0.0e+00 1113.2 671 83.5
Glyma.13G342900 Glycine max HOM05D004763 ORTHO05D007492 0.0e+00 1108.6 675 83.1
Haze_23044 Corylus avellana HOM05D004763 ORTHO05D007492 0.0e+00 1108.2 678 83.3
HanXRQChr14g0451781 Helianthus annuus HOM05D004763 ORTHO05D007492 0.0e+00 1106.7 678 83.5
Medtr2g098510 Medicago truncatula HOM05D004763 ORTHO05D007492 0.0e+00 1106.3 670 83.9
THA.LOC104816912 Tarenaya hassleriana HOM05D004763 ORTHO05D007492 0.0e+00 1105.1 661 84.1
Sed0013957 Sechium edule HOM05D004763 ORTHO05D007492 0.0e+00 1104.4 672 83.5
AUR62019250 Chenopodium quinoa HOM05D004763 ORTHO05D007492 0.0e+00 1103.6 674 82.8
Phvul.005G150500 Phaseolus vulgaris HOM05D004763 ORTHO05D007492 0.0e+00 1103.6 675 83.6
Lalb_Chr14g0372291 Lupinus albus HOM05D004763 ORTHO05D007492 0.0e+00 1103.2 676 83.6
Potri.003G211000 Populus trichocarpa HOM05D004763 ORTHO05D007492 0.0e+00 1101.3 672 82.6
EL10Ac4g10318 Beta vulgaris HOM05D004763 ORTHO05D007492 0.0e+00 1100.5 662 82.8
Cc01_g04070 Coffea canephora HOM05D004763 ORTHO05D007492 0.0e+00 1097.4 670 82.2
Psat5g288480 Pisum sativum HOM05D004763 ORTHO05D007492 0.0e+00 1097.0 671 82.4
Ciclev10014511m.g Citrus clementina HOM05D004763 ORTHO05D007492 0.0e+00 1092.8 661 83.7
ECA238G4453 Erigeron canadensis HOM05D004763 ORTHO05D007492 0.0e+00 1092.0 672 82.4
arahy.Tifrunner.gnm1.ann1.P0K6XU Arachis hypogaea HOM05D004763 ORTHO05D007492 0.0e+00 1089.7 675 82.5
Eucgr.B03662 Eucalyptus grandis HOM05D004763 ORTHO05D007492 0.0e+00 1088.9 676 80.6
arahy.Tifrunner.gnm1.ann1.VYK1P0 Arachis hypogaea HOM05D004763 ORTHO05D007492 0.0e+00 1086.2 677 82.0
arahy.Tifrunner.gnm1.ann1.GN3GFY Arachis hypogaea HOM05D004763 ORTHO05D007492 0.0e+00 1084.3 677 81.8
Cpa.g.sc84.111 Carica papaya HOM05D004763 ORTHO05D007492 0.0e+00 1084.3 700 79.0
TPR.G18851 Trifolium pratense HOM05D004763 ORTHO05D007492 0.0e+00 1079.3 666 82.6
AL3G34700 Arabidopsis lyrata HOM05D004763 ORTHO05D007492 0.0e+00 1078.5 662 81.9
Sopen01g009200 Solanum pennellii HOM05D004763 ORTHO05D007492 0.0e+00 1077.8 675 80.4
Peaxi162Scf00773g00119 Petunia axillaris HOM05D004763 ORTHO05D007492 0.0e+00 1077.0 683 80.2
Carub.0003s2074 Capsella rubella HOM05D004763 ORTHO05D007492 0.0e+00 1075.5 662 81.6
COL.COLO4_09893 Corchorus olitorius HOM05D004763 ORTHO05D007492 0.0e+00 1075.1 664 82.1
Solyc01g014490.4 Solanum lycopersicum HOM05D004763 ORTHO05D007492 0.0e+00 1075.1 675 80.1
AT3G20780 Arabidopsis thaliana HOM05D004763 ORTHO05D007492 4.6e-312 1074.3 663 81.4
BcaC05g28282 Brassica carinata HOM05D004763 ORTHO05D007492 4.6e-312 1073.5 670 80.3
C05p43300 Brassica napus HOM05D004763 ORTHO05D007492 9.2e-312 1072.8 670 80.1
Sp3g18800 Schrenkiella parvula HOM05D004763 ORTHO05D007492 1.4e-311 1072.4 667 80.4
RcHm_v2.0_Chr5g0078101 Rosa chinensis HOM05D004763 ORTHO05D007492 1.8e-311 1072.0 665 81.5
Lj3g0020649 Lotus japonicus HOM05D004763 ORTHO05D007492 3.2e-311 1071.2 676 81.7
Migut.D00558 Erythranthe guttata HOM05D004763 ORTHO05D007492 1.2e-310 1069.3 677 80.4
Thhalv10020214m.g Eutrema salsugineum HOM05D004763 ORTHO05D007492 1.6e-310 1068.9 670 80.1
BcaB06g26148 Brassica carinata HOM05D004763 ORTHO05D007492 2.7e-310 1068.1 668 80.5
VMungo1080G1755 Vigna mungo HOM05D004763 ORTHO05D007492 2.7e-310 1068.1 671 81.2
PGR102G0325 Punica granatum HOM05D004763 ORTHO05D007492 3.5e-310 1067.8 675 80.6
Sabra03G0153800 Salix brachista HOM05D004763 ORTHO05D007492 1.0e-309 1066.2 647 82.4
Sabra03G0156000 Salix brachista HOM05D004763 ORTHO05D007492 1.0e-309 1066.2 647 82.4
FvH4_3g43550 Fragaria vesca HOM05D004763 ORTHO05D007492 6.6e-309 1063.5 665 80.6
arahy.Tifrunner.gnm1.ann1.X75IXN Arachis hypogaea HOM05D004763 ORTHO05D007492 8.6e-309 1063.1 715 77.3
A05p28000 Brassica napus HOM05D004763 ORTHO05D007492 4.3e-308 1060.8 683 78.9
Prupe.6G018600 Prunus persica HOM05D004763 ORTHO05D007492 1.6e-307 1058.9 692 78.6
ATR0605G091 Amborella trichopoda HOM05D004763 ORTHO05D007492 2.8e-307 1058.1 672 80.2
Duzib150G1218 Durio zibethinus HOM05D004763 ORTHO05D007492 1.2e-305 1052.7 691 79.0
BraA05t21683Z Brassica rapa HOM05D004763 ORTHO05D007492 2.6e-305 1051.6 692 77.7
FAN16G3272 Fragaria x ananassa HOM05D004763 ORTHO05D007492 3.4e-305 1051.2 675 79.3
MD03G1021100 Malus domestica HOM05D004763 ORTHO05D007492 3.4e-305 1051.2 681 78.7
Nitab4.5_0006575g0020 Nicotiana tabacum HOM05D004763 ORTHO05D007492 3.7e-304 1047.7 693 78.9
BolC5t33062H Brassica oleracea HOM05D004763 ORTHO05D007492 2.4e-303 1045.0 701 76.2
HPP92_020536 Vanilla planifolia HOM05D004763 ORTHO05D007492 5.4e-303 1043.9 672 78.1
Os09g0279600 Oryza sativa ssp. japonica HOM05D004763 ORTHO05D007492 7.3e-300 1033.5 645 78.9
Nitab4.5_0003069g0050 Nicotiana tabacum HOM05D004763 ORTHO05D007492 3.6e-299 1031.2 680 79.3
CDE04G0998 Ceratophyllum demersum HOM05D004763 ORTHO05D007492 2.0e-297 1025.4 641 80.8
SGA_v2.0_scaffold1G00797 Striga asiatica HOM05D004763 ORTHO05D007492 3.7e-296 1021.1 725 74.2
Rhsim01G0189300 Rhododendron simsii HOM05D004763 ORTHO05D007492 2.1e-294 1015.4 759 71.5
Lsat_1_v5_gn_2_101121 Lactuca sativa HOM05D004763 ORTHO05D007492 8.9e-290 1000.0 699 75.5
Actinidia39377 Actinidia chinensis HOM05D004763 ORTHO05D007492 3.7e-288 994.6 676 76.5
Aa31LG8G7590 Aethionema arabicum HOM05D004763 ORTHO05D007492 2.4e-287 991.9 645 78.8
Ah.04g161760 Amaranthus hybridus HOM05D004763 ORTHO05D007492 3.3e-284 981.5 674 76.0
Atru.chr3.2503 Acer truncatum HOM05D004763 ORTHO05D007492 3.0e-277 958.4 582 82.6
Pp3c22_12720 Physcomitrium patens HOM05D004763 ORTHO05D007492 2.6e-273 945.3 665 72.0
AagrBONN_evm.TU.Sc2ySwM_344.3405 Anthoceros agrestis HOM05D004763 ORTHO05D007492 7.1e-271 937.2 645 71.9
Ca_01270_v3 Cicer arietinum L. HOM05D004763 ORTHO05D007492 1.3e-269 932.9 597 79.6
DCAR_024396 Daucus carota HOM05D004763 ORTHO05D007492 1.3e-269 932.9 674 72.4
CARHR096610 Cardamine hirsuta HOM05D004763 ORTHO05D007492 3.9e-269 931.4 590 79.0
Mapoly0042s0060 Marchantia polymorpha HOM05D004763 ORTHO05D007492 5.6e-268 927.5 660 70.5
Aqoxy381s001 Aquilegia oxysepala HOM05D004763 ORTHO05D007492 2.1e-267 925.6 653 75.0
SMO116G0144 Selaginella moellendorffii HOM05D004763 ORTHO05D007492 1.5e-265 919.5 651 71.9
Hma1.2p1_1169F.1_g263310 Hydrangea macrophylla HOM05D004763 ORTHO05D007492 3.9e-261 904.8 509 87.6
CBR_g31022 Chara braunii HOM05D004763 ORTHO05D007492 1.6e-254 882.9 661 67.2
Lj4g0010878 Lotus japonicus HOM05D004763 ORTHO05D007492 2.1e-254 882.5 676 71.4
FAN21G2003 Fragaria x ananassa HOM05D004763 ORTHO05D007492 1.9e-252 875.9 637 72.5
FAN11G2145 Fragaria x ananassa HOM05D004763 ORTHO05D007492 4.3e-244 848.2 702 65.4
FAN11G0713 Fragaria x ananassa HOM05D004763 ORTHO05D007492 1.4e-239 833.2 702 64.4
Potri.T085401 Populus trichocarpa HOM05D004763 ORTHO05D007492 1.0e-224 783.9 443 87.6
Zm00001eb308780 Zea mays HOM05D004763 ORTHO05D007492 2.1e-214 749.6 462 78.4
Cre01.g019750 Chlamydomonas reinhardtii HOM05D004763 ORTHO05D007492 1.4e-197 693.7 684 53.5
SEGI_32015 Sequoiadendron giganteum HOM05D004763 ORTHO05D007492 1.4e-178 630.6 382 80.6
MCO09G243 Micromonas commoda HOM05D004763 ORTHO05D007492 7.8e-177 624.8 671 51.4
Lsat_1_v5_gn_1_127001 Lactuca sativa HOM05D004763 ORTHO05D007492 1.3e-176 624.0 549 62.1
MBI01_g15753_MAGBIO Magnolia biondii HOM05D004763 ORTHO05D007492 8.1e-174 614.8 370 86.8
PRCOL_00005940 Prasinoderma coloniale HOM05D004763 ORTHO05D007492 8.9e-173 611.3 674 49.7
ClCG02G023620 Citrullus lanatus HOM05D004763 ORTHO05D007492 3.0e-168 596.3 375 82.7
CAN.G646.1 Capsicum annuum HOM05D004763 ORTHO05D007492 4.2e-162 575.9 367 80.7
PGSC0003DMG401029907 Solanum tuberosum HOM05D004763 ORTHO05D007492 3.0e-160 569.7 383 78.3
Lju1319A4T15 Lonicera japonica HOM05D004763 ORTHO05D007492 1.3e-144 517.7 306 83.7
Lj1A366T12 Lonicera japonica HOM05D004763 ORTHO05D007492 9.3e-138 495.0 367 71.4
PGSC0003DMG402029907 Solanum tuberosum HOM05D004763 ORTHO05D007492 2.7e-137 493.4 307 78.8
CAN.G442.1 Capsicum annuum HOM05D004763 ORTHO05D007492 4.6e-137 492.7 308 78.2
Lsat_1_v5_gn_1_127121 Lactuca sativa HOM05D004763 ORTHO05D007492 1.3e-136 491.1 615 49.9
Lj1C366G5 Lonicera japonica HOM05D004763 ORTHO05D007492 8.5e-115 418.7 296 73.0
Lsat_1_v5_gn_1_126981 Lactuca sativa HOM05D004763 ORTHO05D007492 1.2e-108 398.3 465 51.6
Actinidia06319 Actinidia chinensis HOM05D004763 ORTHO05D007492 1.3e-83 315.1 216 74.1
SEGI_39045 Sequoiadendron giganteum HOM05D004763 ORTHO05D007492 4.3e-82 310.1 217 70.5
Eucgr.B03660 Eucalyptus grandis HOM05D004763 ORTHO05D007492 8.1e-65 252.7 176 70.5
Lju1319C4G3 Lonicera japonica HOM05D004763 ORTHO05D014896 7.6e-55 219.5 234 57.7
TPR.G29743 Trifolium pratense HOM05D004763 ORTHO05D007492 9.2e-53 212.6 213 57.3
Lsat_1_v5_gn_1_126941 Lactuca sativa HOM05D004763 ORTHO05D007492 2.8e-49 201.1 148 66.2
TPR.G29742 Trifolium pratense HOM05D004763 ORTHO05D007492 6.2e-49 199.9 249 51.0
Oeu036968.1 Olea europaea HOM05D004763 ORTHO05D007492 1.1e-48 199.1 104 86.5
Lsat_1_v5_gn_1_127201 Lactuca sativa HOM05D004763 ORTHO05D007492 2.7e-36 157.9 414 32.4
Lsat_1_v5_gn_1_127161 Lactuca sativa HOM05D004763 ORTHO05D007492 8.7e-35 152.9 173 49.7
MBI09_g40619_MAGBIO Magnolia biondii HOM05D004763 ORTHO05D019264 1.1e-32 146.0 87 81.6
MBI04_g09599_MAGBIO Magnolia biondii HOM05D000103 ORTHO05D019264 1.4e-32 145.6 87 81.6
Aa31LG8G7550 Aethionema arabicum HOM05D004763 ORTHO05D007492 2.4e-32 144.8 468 33.5
Ca_01269_v3 Cicer arietinum L. HOM05D000073 ORTHO05D000033 2.4e-32 144.8 117 71.8
MBI02_g24793_MAGBIO Magnolia biondii HOM05D000103 ORTHO05D019264 1.2e-31 142.5 87 80.5
Thecc.03G073800 Theobroma cacao HOM05D004763 ORTHO05D019264 9.3e-29 132.9 98 68.4
PGSC0003DMG400012096 Solanum tuberosum HOM05D004763 ORTHO05D014896 6.0e-28 130.2 86 75.6
PGSC0003DMG401017076 Solanum tuberosum HOM05D004763 ORTHO05D026177 3.8e-22 110.9 113 54.0
arahy.Tifrunner.gnm1.ann1.50I1V9 Arachis hypogaea HOM05D004763 ORTHO05D014896 5.1e-19 100.5 68 76.5
arahy.Tifrunner.gnm1.ann1.F7UR4V Arachis hypogaea HOM05D004763 ORTHO05D014896 1.1e-18 99.4 68 75.0
arahy.Tifrunner.gnm1.ann1.G1IAFF Arachis hypogaea HOM05D004763 ORTHO05D014896 1.5e-18 99.0 82 67.1
Lsat_1_v5_gn_3_118680 Lactuca sativa HOM05D004763 ORTHO05D007492 1.9e-18 98.6 55 87.3
PGSC0003DMG400026817 Solanum tuberosum HOM05D004763 ORTHO05D026177 2.8e-17 94.7 81 66.7
Lju1319A4T14 Lonicera japonica HOM05D004763 ORTHO05D019264 3.7e-17 94.4 54 83.3
Sopen04g015550 Solanum pennellii HOM05D000004 ORTHO05D000002 1.4e-16 92.4 90 61.1
arahy.Tifrunner.gnm1.ann1.65KXHR Arachis hypogaea HOM05D004763 ORTHO05D014896 3.4e-15 87.8 49 87.8
Lsat_1_v5_gn_1_125620 Lactuca sativa HOM05D004763 ORTHO05D007492 7.6e-15 86.7 200 35.0
TWI60G1170 Tripterygium wilfordii HOM05D004763 ORTHO05D014896 1.3e-14 85.9 49 85.7
Lsat_1_v5_gn_1_126960 Lactuca sativa HOM05D004763 ORTHO05D012314 9.3e-13 79.7 68 55.9
arahy.Tifrunner.gnm1.ann1.YT3XVJ Arachis hypogaea HOM05D012186 ORTHO05D009594 2.1e-12 78.6 83 55.4
Solyc11g028310.3 Solanum lycopersicum HOM05D004763 ORTHO05D026177 3.9e-11 74.3 63 68.3
Solyc12g036030.1 Solanum lycopersicum HOM05D004763 ORTHO05D026177 3.3e-10 71.2 97 47.4
PGSC0003DMG400019106 Solanum tuberosum HOM05D004763 ORTHO05D007492 9.7e-10 69.7 37 86.5
Aa31LG8G7540 Aethionema arabicum HOM05D004763 ORTHO05D007492 1.6e-09 68.9 67 53.7
Solyc11g028340.3 Solanum lycopersicum HOM05D004763 ORTHO05D019264 5.3e-08 63.9 43 67.4
Solyc11g028350.1 Solanum lycopersicum HOM05D004763 ORTHO05D019264 1.3e-06 59.3 40 67.5
arahy.Tifrunner.gnm1.ann1.NZV0HQ Arachis hypogaea HOM05D004763 ORTHO05D014896 5.0e-06 57.4 33 87.9
Lsat_1_v5_gn_8_146221 Lactuca sativa HOM05D004763 ORTHO05D014896 6.5e-06 57.0 33 78.8


User provided reference genes

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