Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PSO339G2752 Papaver somniferum HOM05D003576 ORTHO05D004124 9.6e-189 663.3 328 100.0
PSO384G2156 Papaver somniferum HOM05D003576 ORTHO05D004124 1.4e-187 659.4 328 99.4
Aqoxy1G02388 Aquilegia oxysepala HOM05D003576 ORTHO05D004124 4.4e-125 451.8 324 71.0
Nn2g13102 Nelumbo nucifera HOM05D003576 ORTHO05D004124 1.4e-123 446.8 324 68.2
TAR633G2490 Trochodendron aralioides HOM05D003576 ORTHO05D004124 1.3e-121 440.3 326 68.1
Hma1.2p1_0382F.1_g140100 Hydrangea macrophylla HOM05D003576 ORTHO05D004124 2.3e-118 429.5 326 65.3
Os02g0805900 Oryza sativa ssp. japonica HOM05D003576 ORTHO05D004124 3.1e-118 429.1 325 66.5
Nitab4.5_0000476g0030 Nicotiana tabacum HOM05D003576 ORTHO05D004124 1.2e-117 427.2 326 64.1
RcHm_v2.0_Chr6g0284661 Rosa chinensis HOM05D003576 ORTHO05D004124 2.0e-117 426.4 326 63.8
FvH4_2g18840 Fragaria vesca HOM05D003576 ORTHO05D004124 3.4e-117 425.6 326 65.0
Gohir.D10G214000 Gossypium hirsutum HOM05D003576 ORTHO05D004124 4.4e-117 425.2 331 64.7
Zm00001eb273430 Zea mays HOM05D003576 ORTHO05D004124 5.8e-117 424.9 324 65.4
Atru.chr12.780 Acer truncatum HOM05D003576 ORTHO05D004124 1.3e-116 423.7 326 63.5
Gohir.A10G205700 Gossypium hirsutum HOM05D003576 ORTHO05D004124 1.3e-116 423.7 331 64.7
Gorai.011G239400 Gossypium raimondii HOM05D003576 ORTHO05D004124 1.3e-116 423.7 331 64.7
DCAR_019104 Daucus carota HOM05D003576 ORTHO05D004124 1.7e-116 423.3 327 65.7
CDE04G0074 Ceratophyllum demersum HOM05D003576 ORTHO05D004124 2.2e-116 422.9 324 65.7
Cfa021515 Carpinus fangiana HOM05D003576 ORTHO05D004124 2.9e-116 422.5 327 64.2
vmacro07071 Vaccinium macrocarpon HOM05D003576 ORTHO05D004124 2.9e-116 422.5 323 64.4
Atru.chr12.756 Acer truncatum HOM05D003576 ORTHO05D004124 3.7e-116 422.2 326 64.1
arahy.Tifrunner.gnm1.ann1.33B581 Arachis hypogaea HOM05D003576 ORTHO05D004124 3.7e-116 422.2 319 63.9
Ciclev10032124m.g Citrus clementina HOM05D003576 ORTHO05D004124 1.1e-115 420.6 327 64.5
Lalb_Chr01g0010001 Lupinus albus HOM05D003576 ORTHO05D004124 1.1e-115 420.6 319 63.6
Phvul.004G083500 Phaseolus vulgaris HOM05D003576 ORTHO05D004124 1.4e-115 420.2 318 64.5
arahy.Tifrunner.gnm1.ann1.THE0XD Arachis hypogaea HOM05D003576 ORTHO05D004124 1.9e-115 419.9 319 63.3
AUR62018250 Chenopodium quinoa HOM05D003576 ORTHO05D004124 1.9e-115 419.9 326 62.9
Lalb_Chr03g0035911 Lupinus albus HOM05D003576 ORTHO05D004124 1.9e-115 419.9 319 63.3
Thecc.10G074000 Theobroma cacao HOM05D003576 ORTHO05D004124 1.9e-115 419.9 331 64.0
CSS0018972 Camellia sinensis var. sinensis HOM05D003576 ORTHO05D004124 2.4e-115 419.5 326 64.7
CSS0040774 Camellia sinensis var. sinensis HOM05D003576 ORTHO05D004124 2.4e-115 419.5 326 64.7
GSVIVG01016273001 Vitis vinifera HOM05D003576 ORTHO05D004124 3.2e-115 419.1 326 64.7
Actinidia38283 Actinidia chinensis HOM05D003576 ORTHO05D004124 4.1e-115 418.7 328 63.7
Rhsim03G0120500 Rhododendron simsii HOM05D003576 ORTHO05D004124 5.4e-115 418.3 327 63.0
Manes.07G100300 Manihot esculenta HOM05D003576 ORTHO05D004124 1.6e-114 416.8 329 64.4
PGR142G1591 Punica granatum HOM05D003576 ORTHO05D004124 1.6e-114 416.8 332 63.9
HPP92_020748 Vanilla planifolia HOM05D003576 ORTHO05D004124 1.6e-114 416.8 324 64.8
CAN.G694.86 Capsicum annuum HOM05D003576 ORTHO05D004124 2.1e-114 416.4 326 63.5
ClCG08G007510 Citrullus lanatus HOM05D003576 ORTHO05D004124 2.7e-114 416.0 324 62.3
Lj3A882G53 Lonicera japonica HOM05D003576 ORTHO05D004124 3.5e-114 415.6 321 65.4
CANSAT56G0320 Cannabis sativa HOM05D003576 ORTHO05D004124 4.6e-114 415.2 326 63.5
PSO063G6153 Papaver somniferum HOM05D003576 ORTHO05D004124 4.6e-114 415.2 262 76.7
Prupe.2G213500 Prunus persica HOM05D003576 ORTHO05D004124 1.0e-113 414.1 326 62.6
Solyc05g056110.3 Solanum lycopersicum HOM05D003576 ORTHO05D004124 1.0e-113 414.1 326 61.7
Sopen05g034520 Solanum pennellii HOM05D003576 ORTHO05D004124 1.0e-113 414.1 326 61.7
Cc02_g11340 Coffea canephora HOM05D003576 ORTHO05D004124 2.3e-113 412.9 330 63.0
Glyma.02G074100 Glycine max HOM05D003576 ORTHO05D004124 3.9e-113 412.1 317 62.8
Sabra10G0172200 Salix brachista HOM05D003576 ORTHO05D004124 3.9e-113 412.1 327 62.7
ATR0048G008 Amborella trichopoda HOM05D003576 ORTHO05D004124 5.1e-113 411.8 326 64.4
CsaV3_6G036430 Cucumis sativus L. HOM05D003576 ORTHO05D004124 5.1e-113 411.8 324 62.3
Glyma.16G155600 Glycine max HOM05D003576 ORTHO05D004124 5.1e-113 411.8 317 62.8
Sc20g0001840 Simmondsia chinensis HOM05D003576 ORTHO05D004124 1.5e-112 410.2 326 61.0
Eucgr.J01085 Eucalyptus grandis HOM05D003576 ORTHO05D004124 1.9e-112 409.8 326 62.6
Potri.008G039500 Populus trichocarpa HOM05D003576 ORTHO05D004124 2.5e-112 409.5 327 63.0
MD07G1174600 Malus domestica HOM05D003576 ORTHO05D004124 3.3e-112 409.1 328 61.3
FAN15G0532 Fragaria x ananassa HOM05D003576 ORTHO05D004124 4.3e-112 408.7 337 62.0
MD01G1108400 Malus domestica HOM05D003576 ORTHO05D004124 4.3e-112 408.7 326 62.0
TPR.G36712 Trifolium pratense HOM05D003576 ORTHO05D004124 5.6e-112 408.3 318 63.2
Medtr6g033535 Medicago truncatula HOM05D003576 ORTHO05D004124 7.3e-112 407.9 318 62.9
Dinv36441 Davidia involucrata HOM05D003576 ORTHO05D004124 2.1e-111 406.4 327 62.1
QL08p055786 Quercus lobata HOM05D003576 ORTHO05D004124 2.1e-111 406.4 329 61.7
THA.LOC104827300 Tarenaya hassleriana HOM05D003576 ORTHO05D004124 2.8e-111 406.0 329 61.4
TWI15G0705 Tripterygium wilfordii HOM05D003576 ORTHO05D004124 2.8e-111 406.0 333 61.3
Potri.010G222800 Populus trichocarpa HOM05D003576 ORTHO05D004124 3.6e-111 405.6 326 62.6
CiPaw.02G173900 Carya illinoinensis HOM05D003576 ORTHO05D004124 6.2e-111 404.8 333 62.5
Sabra08G0027100 Salix brachista HOM05D003576 ORTHO05D004124 8.1e-111 404.4 329 62.3
Lj2g0011631 Lotus japonicus HOM05D003576 ORTHO05D004124 1.4e-110 403.7 319 62.1
Sed0006763 Sechium edule HOM05D003576 ORTHO05D004124 1.8e-110 403.3 322 59.9
EL10Ac2g03301 Beta vulgaris HOM05D003576 ORTHO05D004124 4.0e-110 402.1 326 61.7
ClCG05G021030 Citrullus lanatus HOM05D003576 ORTHO05D004124 6.8e-110 401.4 326 60.4
Migut.F01985 Erythranthe guttata HOM05D003576 ORTHO05D004124 6.8e-110 401.4 332 61.7
CsaV3_5G036280 Cucumis sativus L. HOM05D003576 ORTHO05D004124 3.4e-109 399.1 326 60.4
MSTRG.374 Avicennia marina HOM05D003576 ORTHO05D004124 7.6e-109 397.9 322 63.0
Lsat_1_v5_gn_9_69180 Lactuca sativa HOM05D003576 ORTHO05D004124 9.9e-109 397.5 327 61.2
ECA232G3526 Erigeron canadensis HOM05D003576 ORTHO05D004124 2.9e-108 396.0 325 61.5
FAN24G3530 Fragaria x ananassa HOM05D003576 ORTHO05D004124 2.9e-108 396.0 326 62.0
BcaNung06333 Brassica carinata HOM05D003576 ORTHO05D004124 3.7e-108 395.6 327 61.2
Peaxi162Scf01175g00019 Petunia axillaris HOM05D003576 ORTHO05D004124 3.7e-108 395.6 326 61.3
Sed0008938 Sechium edule HOM05D003576 ORTHO05D004124 8.4e-108 394.4 326 58.9
BcaNung01897 Brassica carinata HOM05D003576 ORTHO05D004124 1.9e-107 393.3 327 60.9
BolC2t06566H Brassica oleracea HOM05D003576 ORTHO05D004124 9.2e-107 391.0 323 60.4
C02p06240 Brassica napus HOM05D003576 ORTHO05D004124 1.2e-106 390.6 329 60.5
A02p02030 Brassica napus HOM05D003576 ORTHO05D004124 1.6e-106 390.2 323 60.4
AUR62037754 Chenopodium quinoa HOM05D003576 ORTHO05D004124 1.6e-106 390.2 385 53.5
Mapoly0154s0022 Marchantia polymorpha HOM05D003576 ORTHO05D004124 1.0e-105 387.5 316 60.4
Nitab4.5_0009985g0010 Nicotiana tabacum HOM05D003576 ORTHO05D004124 1.0e-105 387.5 257 70.8
HanXRQChr15g0496951 Helianthus annuus HOM05D003576 ORTHO05D004124 1.3e-105 387.1 325 60.9
PSO339G5183 Papaver somniferum HOM05D003576 ORTHO05D004124 1.7e-105 386.7 232 80.2
BcaC04g19105 Brassica carinata HOM05D003576 ORTHO05D004124 6.6e-105 384.8 329 60.8
THA.LOC104809882 Tarenaya hassleriana HOM05D003576 ORTHO05D004124 1.1e-104 384.0 339 59.3
BcaB01g05348 Brassica carinata HOM05D003576 ORTHO05D004124 2.5e-104 382.9 329 59.6
ECA238G1405 Erigeron canadensis HOM05D003576 ORTHO05D004124 7.3e-104 381.3 315 59.7
BcaC04g19106 Brassica carinata HOM05D003576 ORTHO05D004124 2.8e-103 379.4 323 61.0
Sp6g30460 Schrenkiella parvula HOM05D003576 ORTHO05D004124 8.1e-103 377.9 338 58.9
SMO356G0089 Selaginella moellendorffii HOM05D003576 ORTHO05D004124 1.1e-102 377.5 307 60.6
Carub.0006s1173 Capsella rubella HOM05D003576 ORTHO05D004124 1.4e-102 377.1 284 65.8
Dinv31323 Davidia involucrata HOM05D003576 ORTHO05D004124 1.4e-102 377.1 265 67.9
C09p63530 Brassica napus HOM05D003576 ORTHO05D004124 1.8e-102 376.7 323 60.4
BolC9t59197H Brassica oleracea HOM05D003576 ORTHO05D004124 1.8e-102 376.7 323 60.4
Thhalv10014094m.g Eutrema salsugineum HOM05D003576 ORTHO05D004124 4.0e-102 375.6 329 58.4
SalBow3G2401 Salvia bowleyana HOM05D003576 ORTHO05D004124 1.2e-101 374.0 371 55.0
BcaNung01144 Brassica carinata HOM05D003576 ORTHO05D004124 2.6e-101 372.9 330 59.1
AL6G24180 Arabidopsis lyrata HOM05D003576 ORTHO05D004124 5.8e-101 371.7 284 64.8
CARHR199870 Cardamine hirsuta HOM05D003576 ORTHO05D004124 5.8e-101 371.7 284 64.8
AT5G13570 Arabidopsis thaliana HOM05D003576 ORTHO05D004124 2.9e-100 369.4 284 64.4
Aa31LG11G7770 Aethionema arabicum HOM05D003576 ORTHO05D004124 2.4e-99 366.3 370 53.2
A10p24700 Brassica napus HOM05D003576 ORTHO05D004124 1.2e-98 364.0 323 58.2
unitig_699.g19224 Utricularia gibba HOM05D003576 ORTHO05D004124 4.6e-98 362.1 326 57.7
BraA10t44533Z Brassica rapa HOM05D003576 ORTHO05D004124 7.8e-98 361.3 323 57.9
Pp3c1_22690 Physcomitrium patens HOM05D003576 ORTHO05D004124 1.7e-97 360.1 273 63.0
AagrBONN_evm.TU.Sc2ySwM_228.4941 Anthoceros agrestis HOM05D003576 ORTHO05D004124 3.0e-97 359.4 302 59.3
CiPaw.01G272700 Carya illinoinensis HOM05D003576 ORTHO05D004124 1.5e-96 357.1 256 67.6
Actinidia06773 Actinidia chinensis HOM05D003576 ORTHO05D004124 1.3e-95 354.0 228 73.2
Pp3c10_5620 Physcomitrium patens HOM05D003576 ORTHO05D004124 2.4e-94 349.7 372 50.5
MELO3C012428.2 Cucumis melo HOM05D003576 ORTHO05D004124 6.9e-94 348.2 233 69.1
Pp3c2_16830 Physcomitrium patens HOM05D003576 ORTHO05D004124 6.9e-94 348.2 257 64.6
Duzib114G0196 Durio zibethinus HOM05D003576 ORTHO05D004124 7.6e-93 344.7 326 56.7
Migut.F01761 Erythranthe guttata HOM05D003576 ORTHO05D004124 1.3e-92 344.0 312 55.8
PGR044G0669 Punica granatum HOM05D003576 ORTHO05D004124 8.4e-92 341.3 320 55.0
Haze_16891 Corylus avellana HOM05D003576 ORTHO05D004124 2.1e-90 336.7 350 52.3
BcaB06g27487 Brassica carinata HOM05D003576 ORTHO05D004124 3.9e-89 332.4 262 62.2
COL.COLO4_23659 Corchorus olitorius HOM05D003576 ORTHO05D004124 8.7e-89 331.3 238 68.5
SHI19520 Sapria himalayana HOM05D003576 ORTHO05D004124 1.5e-88 330.5 296 57.8
BcaC04g19104 Brassica carinata HOM05D003576 ORTHO05D004124 5.6e-88 328.6 307 57.0
C04p47100 Brassica napus HOM05D003576 ORTHO05D004124 9.6e-88 327.8 269 60.2
SGA_v2.0_scaffold100G29594 Striga asiatica HOM05D003576 ORTHO05D004124 3.6e-87 325.9 338 54.4
A04p13320 Brassica napus HOM05D003576 ORTHO05D004124 4.8e-87 325.5 262 61.1
BolC4t26304H Brassica oleracea HOM05D003576 ORTHO05D004124 4.8e-87 325.5 267 60.3
Ah.10g032640 Amaranthus hybridus HOM05D003576 ORTHO05D004124 4.0e-86 322.4 331 51.4
BraA04t16990Z Brassica rapa HOM05D003576 ORTHO05D004124 6.9e-86 321.6 267 59.2
Cpa.g.sc53.83 Carica papaya HOM05D003576 ORTHO05D004124 3.8e-84 315.8 356 50.0
MELO3C019797.2 Cucumis melo HOM05D003576 ORTHO05D004124 7.1e-83 311.6 205 71.2
CBR_g38931 Chara braunii HOM05D003576 ORTHO05D004124 7.9e-82 308.1 248 60.1
BcaB06g27496 Brassica carinata HOM05D003576 ORTHO05D004124 3.0e-81 306.2 234 63.7
BraA04t16999Z Brassica rapa HOM05D003576 ORTHO05D004124 2.5e-80 303.1 233 62.2
A04p13360 Brassica napus HOM05D003576 ORTHO05D004124 9.6e-80 301.2 233 61.4
BraA04t16993Z Brassica rapa HOM05D003576 ORTHO05D004124 3.7e-79 299.3 233 60.9
BraA04t16997Z Brassica rapa HOM05D003576 ORTHO05D004124 8.1e-79 298.1 235 61.7
TAR636G0323 Trochodendron aralioides HOM05D003576 ORTHO05D004124 1.8e-78 297.0 234 63.2
BraA04t16996Z Brassica rapa HOM05D003576 ORTHO05D004124 3.1e-78 296.2 263 56.3
C04p47110 Brassica napus HOM05D003576 ORTHO05D004124 9.0e-78 294.7 233 60.5
A04p13340 Brassica napus HOM05D003576 ORTHO05D004124 3.4e-77 292.7 233 60.1
A04p13380 Brassica napus HOM05D003576 ORTHO05D004124 3.4e-77 292.7 233 60.1
A04p13410 Brassica napus HOM05D003576 ORTHO05D004124 3.4e-77 292.7 233 60.1
BolC4t26310H Brassica oleracea HOM05D003576 ORTHO05D004124 4.5e-77 292.4 233 60.1
BolC4t26305H Brassica oleracea HOM05D003576 ORTHO05D004124 2.9e-76 289.7 263 55.9
BraA04t16991Z Brassica rapa HOM05D003576 ORTHO05D004124 8.4e-76 288.1 247 57.1
BcaB06g27493 Brassica carinata HOM05D003576 ORTHO05D004124 7.1e-75 285.0 262 56.9
Ah.16g106400 Amaranthus hybridus HOM05D003576 ORTHO05D004124 1.1e-64 251.1 335 46.3
Zm00001eb290030 Zea mays HOM05D003576 ORTHO05D004124 3.3e-64 249.6 150 78.0
CDE03G0119 Ceratophyllum demersum HOM05D003576 ORTHO05D004124 1.3e-63 247.7 315 45.7
Zm00001eb366000 Zea mays HOM05D003576 ORTHO05D004124 1.4e-62 244.2 150 77.3
BcaB06g27489 Brassica carinata HOM05D003576 ORTHO05D004124 1.3e-60 237.7 201 60.7
BcaB06g27491 Brassica carinata HOM05D003576 ORTHO05D004124 1.3e-60 237.7 176 64.8
Ca_27771_v3 Cicer arietinum L. HOM05D003576 ORTHO05D004124 4.2e-59 232.6 206 57.3
FAN15G1487 Fragaria x ananassa HOM05D003576 ORTHO05D004124 5.5e-59 232.3 165 68.5
Sp7g03020 Schrenkiella parvula HOM05D003576 ORTHO05D004124 3.6e-58 229.6 258 48.4
C03p07100 Brassica napus HOM05D002836 ORTHO05D003107 9.7e-56 221.5 317 41.6
PRCOL_00003742 Prasinoderma coloniale HOM05D003576 ORTHO05D004124 3.7e-55 219.5 202 54.0
BolC3t13209H Brassica oleracea HOM05D003576 ORTHO05D004124 1.1e-54 218.0 326 41.7
CBR_g39890 Chara braunii HOM05D003576 ORTHO05D004124 2.4e-54 216.9 183 56.3
Cfa023847 Carpinus fangiana HOM05D003576 ORTHO05D004124 3.1e-54 216.5 257 47.9
CDE03G0459 Ceratophyllum demersum HOM05D003576 ORTHO05D004124 3.1e-54 216.5 151 71.5
Psat1g000080 Pisum sativum HOM05D003576 ORTHO05D004124 2.0e-53 213.8 219 52.1
A04p13390 Brassica napus HOM05D003576 ORTHO05D004124 1.4e-51 207.6 232 47.0
MCO14G142 Micromonas commoda HOM05D003576 ORTHO05D004124 2.5e-51 206.8 243 44.0
Sp3g29060 Schrenkiella parvula HOM05D003576 ORTHO05D004124 8.8e-49 198.4 246 45.9
BolC4t26308H Brassica oleracea HOM05D003576 ORTHO05D004124 1.1e-48 198.0 262 42.7
Cre07.g344850 Chlamydomonas reinhardtii HOM05D003576 ORTHO05D004124 1.2e-45 188.0 244 41.8
Psat1g098680 Pisum sativum HOM05D003576 ORTHO05D004124 4.2e-43 179.5 174 53.4
SEGI_06233 Sequoiadendron giganteum HOM05D003576 ORTHO05D004124 4.2e-43 179.5 264 40.9
Ca_07562_v3 Cicer arietinum L. HOM05D003576 ORTHO05D004124 6.1e-42 175.6 183 50.8
CSS0030842 Camellia sinensis var. sinensis HOM05D003576 ORTHO05D004124 3.1e-38 163.3 135 58.5
Zm00001eb305720 Zea mays HOM05D003576 ORTHO05D004124 4.7e-34 149.4 77 85.7
TAR636G2201 Trochodendron aralioides HOM05D003576 ORTHO05D004124 1.0e-33 148.3 120 65.8
Sp7g01550 Schrenkiella parvula HOM05D003576 ORTHO05D004124 2.8e-31 140.2 233 37.3
Oeu017646.1 Olea europaea HOM05D003576 ORTHO05D004124 4.8e-31 139.4 114 58.8
CDE03G0152 Ceratophyllum demersum HOM05D003576 ORTHO05D004124 2.7e-29 133.7 142 47.2
CSS0009257 Camellia sinensis var. sinensis HOM05D003576 ORTHO05D004124 2.5e-27 127.1 84 72.6
AL4G23990 Arabidopsis lyrata HOM05D003576 ORTHO05D004124 5.7e-24 115.9 123 50.4
C04p47130 Brassica napus HOM05D003576 ORTHO05D004124 4.1e-22 109.8 87 56.3
Sp7g03350 Schrenkiella parvula HOM05D003576 ORTHO05D004124 8.6e-20 102.1 113 48.7
Psat1g098640 Pisum sativum HOM05D003576 ORTHO05D004124 8.9e-17 92.0 88 56.8
BcaNung01892 Brassica carinata HOM05D003576 ORTHO05D000199 2.1e-10 70.9 54 68.5
CSS0032612 Camellia sinensis var. sinensis HOM05D003576 ORTHO05D004124 4.7e-10 69.7 51 66.7
CSS0050114 Camellia sinensis var. sinensis HOM05D003576 ORTHO05D004124 4.7e-10 69.7 51 66.7
CSS0046774 Camellia sinensis var. sinensis HOM05D003576 ORTHO05D004124 1.0e-09 68.6 51 64.7
CSS0033760 Camellia sinensis var. sinensis HOM05D003576 ORTHO05D004124 3.1e-09 67.0 51 64.7
arahy.Tifrunner.gnm1.ann1.EX6GR6 Arachis hypogaea HOM05D003576 ORTHO05D004124 4.4e-08 63.2 100 41.0
Psat1g000040 Pisum sativum HOM05D003576 ORTHO05D004124 3.2e-06 57.0 86 41.9


User provided reference genes

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